Prupe.3G029200_v2.0.a1

regulation of response to stimulus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000281
Physical Location & Seq
Reverse (-)
2186870 .. 2188112
1243 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G029200.1

Sequence Viewer

Length: 864 bp
ATGGACAAAGCCATGAGATTTGTTTCAGTTTTCAGATTTCTAAGCATTGCAACCATTACTACCATTAGCTTATGCAATGGAAATTTGGGTGTGCCTTGTAAACAAAATGAGAGACAAGCACTTTTAATGTTCAAGCAAGATCTCAAGGATCCTTCAAATAGGCTTTTATCTTGGGTTGGTGAAGGAGATTGTTGCAATTGGACTGGAGTTGTTTGCGACAATTTAACCAGTCATGTCCGTGAGCTGCACCTTGGAAATTATTATTCAGATGAGTATCTGAATTACAGTTTGTATCGAAAACTCTTTGGGTGGCAAGTTGGTGTTGCAAACATGACAAGGCTTAAAGTTGTTAATCTCAGGTGGAACATCATCTGGGGTACCATACCTCAAAGGTTGTACACTTGTAGCAATCTTGAGTCCCTATCCCTTTATTTGAATCTCTTGCGAGGTGAAATTTTAAGTTCCATTGGAAACTTGACAGCCATTGTCAATCTTGACTTGTCTGCTAATCAAATCGAAGGGAAAATGCCAAACTCGTTGGGAAATCTTTGTAAGTTGACGGTTCTTGATCTGTCAAGGAACTATTTCAATGGAAGCGTATCAGAAATGGAGTCACTGAAGCTGTCAACAAATGATTTTTCAGGTCCACTATCCGATCAGCTAGGAAATTTCAGACATTTATGCCTCCTTGCTCTTTTGAGTAATTCAATATCAGGTCCAATTCCAGTTACCTTGGGAAATCTGTCATTCCAAGAAGAGGCAAGCATTTCTGAAAATCATTTTAATCGAACTCTTCCAAAAACTACTGGTCAACTCAAAATGGTAACGGCGGCTTATGTAAAGCGTATAGCCGGACGGCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_6 LRR_8

Protein Analysis

288

Amino Acids

32.11

Weight (kDa)

8.75

Isoelectric Point (pI)

23.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 377
AccB1I GGYRCC 1 cut(s) 377
AciI CCGC 1 cut(s) 830
AclWI GGATC 2 cut(s) 143, 156
AcsI RAATTY 3 cut(s) 82, 453, 667
AcuI CTGAAG 1 cut(s) 638
AfaI GTAC 2 cut(s) 379, 398
AfiI CCNNNNNNNGG 1 cut(s) 757
AgsI TTSAA 5 cut(s) 133, 156, 436, 589, 708
AluBI AGCT 4 cut(s) 69, 244, 622, 661
AluI AGCT 4 cut(s) 69, 244, 622, 661
Alw26I GTCTC 1 cut(s) 106
AlwI GGATC 2 cut(s) 143, 156
ApeKI GCWGC 1 cut(s) 244
ApoI RAATTY 3 cut(s) 82, 453, 667
Asp700I GAANNNNTTC 1 cut(s) 584
Asp718I GGTACC 1 cut(s) 377
AspS9I GGNCC 2 cut(s) 644, 716
AsuHPI GGTGA 2 cut(s) 191, 461
AvaII GGWCC 2 cut(s) 644, 716
BamHI GGATCC 1 cut(s) 148
BanI GGYRCC 1 cut(s) 377
BbvI GCAGC 1 cut(s) 231
BceAI ACGGC 1 cut(s) 843
BcoDI GTCTC 1 cut(s) 106
BfaI CTAG 1 cut(s) 662
BglII AGATCT 1 cut(s) 139
BisI GCNGC 2 cut(s) 245, 831
BlsI GCNGC 2 cut(s) 246, 832
Bme18I GGWCC 2 cut(s) 644, 716
BmgT120I GGNCC 2 cut(s) 644, 716
BmiI GGNNCC 2 cut(s) 150, 379
BpmI CTGGAG 1 cut(s) 225
BpuEI CTTGAG 2 cut(s) 128, 434
BsaBI GATNNNNATC 1 cut(s) 273
BsaJI CCNNGG 2 cut(s) 250, 732
Bsc4I CCNNNNNNNGG 1 cut(s) 757
Bse1I ACTGG 4 cut(s) 208, 228, 725, 811
Bse3DI GCAATG 2 cut(s) 45, 82
Bse8I GATNNNNATC 1 cut(s) 273
BseDI CCNNGG 2 cut(s) 250, 732
BseJI GATNNNNATC 1 cut(s) 273
BseLI CCNNNNNNNGG 1 cut(s) 757
BseMI GCAATG 2 cut(s) 45, 82
BseMII CTCAG 1 cut(s) 370
BseNI ACTGG 4 cut(s) 208, 228, 725, 811
BseXI GCAGC 1 cut(s) 231
BsgI GTGCAG 1 cut(s) 230
BshNI GGYRCC 1 cut(s) 377
BsiSI CCGG 1 cut(s) 852
BslFI GGGAC 1 cut(s) 403
BslI CCNNNNNNNGG 1 cut(s) 757
BsmAI GTCTC 1 cut(s) 106
BsmFI GGGAC 1 cut(s) 403
Bsp1407I TGTACA 1 cut(s) 396
Bsp143I GATC 4 cut(s) 139, 148, 568, 655
BspACI CCGC 1 cut(s) 830
BspCNI CTCAG 1 cut(s) 369
BspLI GGNNCC 2 cut(s) 150, 379
BspPI GGATC 2 cut(s) 143, 156
BspT107I GGYRCC 1 cut(s) 377
BsrDI GCAATG 2 cut(s) 45, 82
BsrGI TGTACA 1 cut(s) 396
BsrI ACTGG 4 cut(s) 208, 228, 725, 811
BssECI CCNNGG 2 cut(s) 250, 732
BssMI GATC 4 cut(s) 139, 148, 568, 655
BssT1I CCWWGG 2 cut(s) 250, 732
Bst4CI ACNGT 2 cut(s) 287, 562
Bst6I CTCTTC 2 cut(s) 750, 798
BstAUI TGTACA 1 cut(s) 396
BstC8I GCNNGC 1 cut(s) 763
BstDEI CTNAG 2 cut(s) 41, 356
BstKTI GATC 4 cut(s) 142, 151, 571, 658
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 4 cut(s) 139, 148, 568, 655
BstV1I GCAGC 1 cut(s) 231
BstX2I RGATCY 2 cut(s) 139, 148
BstYI RGATCY 2 cut(s) 139, 148
BtsIMutI CAGTG 1 cut(s) 614
Cac8I GCNNGC 1 cut(s) 763
Cfr13I GGNCC 2 cut(s) 644, 716
Csp6I GTAC 2 cut(s) 378, 397
CviAII CATG 3 cut(s) 13, 233, 331
CviQI GTAC 2 cut(s) 378, 397
DdeI CTNAG 2 cut(s) 41, 356
DpnI GATC 4 cut(s) 141, 150, 570, 657
DpnII GATC 4 cut(s) 139, 148, 568, 655
Eam1104I CTCTTC 2 cut(s) 750, 798
EarI CTCTTC 2 cut(s) 750, 798
Eco130I CCWWGG 2 cut(s) 250, 732
Eco47I GGWCC 2 cut(s) 644, 716
Eco57I CTGAAG 1 cut(s) 638
EcoT14I CCWWGG 2 cut(s) 250, 732
ErhI CCWWGG 2 cut(s) 250, 732
FaeI CATG 3 cut(s) 16, 236, 334
FaiI YATR 9 cut(s) 14, 73, 234, 332, 383, 682, 837, 848, 862
FaqI GGGAC 1 cut(s) 403
FatI CATG 3 cut(s) 12, 232, 330
Fnu4HI GCNGC 2 cut(s) 245, 831
Fsp4HI GCNGC 2 cut(s) 245, 831
FspBI CTAG 1 cut(s) 662
GluI GCNGC 2 cut(s) 245, 831
GsuI CTGGAG 1 cut(s) 225
HapII CCGG 1 cut(s) 852
Hin1II CATG 3 cut(s) 16, 236, 334
HincII GTYRAC 3 cut(s) 558, 627, 812
HindII GTYRAC 3 cut(s) 558, 627, 812
HinfI GANTC 3 cut(s) 416, 436, 611
HpaII CCGG 1 cut(s) 852
HphI GGTGA 2 cut(s) 191, 461
Hpy166II GTNNAC 6 cut(s) 101, 399, 558, 627, 647, 812
Hpy188I TCNGA 7 cut(s) 35, 268, 279, 604, 655, 674, 772
Hpy188III TCNNGA 3 cut(s) 413, 494, 566
Hpy8I GTNNAC 6 cut(s) 101, 399, 558, 627, 647, 812
HpyAV CCTTC 3 cut(s) 162, 176, 512
HpyCH4III ACNGT 2 cut(s) 287, 562
HpyCH4V TGCA 5 cut(s) 50, 75, 195, 247, 326
HpyF3I CTNAG 2 cut(s) 41, 356
Hsp92II CATG 3 cut(s) 16, 236, 334
KpnI GGTACC 1 cut(s) 381
Kzo9I GATC 4 cut(s) 139, 148, 568, 655
LpnPI CCDG 8 cut(s) 189, 241, 343, 358, 627, 699, 738, 792
Lsp1109I GCAGC 1 cut(s) 231
MaeI CTAG 1 cut(s) 662
MaeIII GTNAC 3 cut(s) 612, 727, 823
MalI GATC 4 cut(s) 141, 150, 570, 657
MboI GATC 4 cut(s) 139, 148, 568, 655
MboII GAAGA 2 cut(s) 767, 785
MfeI CAATTG 1 cut(s) 196
MflI RGATCY 2 cut(s) 139, 148
MluCI AATT 9 cut(s) 82, 196, 220, 256, 280, 453, 667, 703, 720
MlyI GAGTC 2 cut(s) 425, 620
MnlI CCTC 4 cut(s) 396, 440, 695, 751
MroXI GAANNNNTTC 1 cut(s) 584
MseI TTAA 6 cut(s) 125, 224, 342, 351, 458, 783
MslI CAYNNNNRTG 1 cut(s) 237
MspI CCGG 1 cut(s) 852
MunI CAATTG 1 cut(s) 196
NdeII GATC 4 cut(s) 139, 148, 568, 655
NlaIII CATG 3 cut(s) 16, 236, 334
NlaIV GGNNCC 2 cut(s) 150, 379
NmuCI GTSAC 1 cut(s) 612
PdmI GAANNNNTTC 1 cut(s) 584
PfeI GAWTC 1 cut(s) 436
PkrI GCNGC 2 cut(s) 246, 832
PleI GAGTC 2 cut(s) 424, 619
PpsI GAGTC 2 cut(s) 424, 619
PspN4I GGNNCC 2 cut(s) 150, 379
PspPI GGNCC 2 cut(s) 644, 716
PsuI RGATCY 2 cut(s) 139, 148
RsaI GTAC 2 cut(s) 379, 398
RsaNI GTAC 2 cut(s) 378, 397
RseI CAYNNNNRTG 1 cut(s) 237
SaqAI TTAA 6 cut(s) 125, 224, 342, 351, 458, 783
SatI GCNGC 2 cut(s) 245, 831
Sau3AI GATC 4 cut(s) 139, 148, 568, 655
Sau96I GGNCC 2 cut(s) 644, 716
SchI GAGTC 2 cut(s) 425, 620
SinI GGWCC 2 cut(s) 644, 716
SmiMI CAYNNNNRTG 1 cut(s) 237
SmlI CTYRAG 2 cut(s) 143, 413
SmoI CTYRAG 2 cut(s) 143, 413
Sse9I AATT 9 cut(s) 82, 196, 220, 256, 280, 453, 667, 703, 720
SsiI CCGC 1 cut(s) 830
SspMI CTAG 1 cut(s) 662
StyI CCWWGG 2 cut(s) 250, 732
TaaI ACNGT 2 cut(s) 287, 562
TaqI TCGA 3 cut(s) 295, 516, 787
TasI AATT 9 cut(s) 82, 196, 220, 256, 280, 453, 667, 703, 720
TatI WGTACW 1 cut(s) 396
TauI GCSGC 1 cut(s) 833
TfiI GAWTC 1 cut(s) 436
Tru1I TTAA 6 cut(s) 125, 224, 342, 351, 458, 783
Tru9I TTAA 6 cut(s) 125, 224, 342, 351, 458, 783
TscAI CASTG 1 cut(s) 621
TseFI GTSAC 1 cut(s) 612
TseI GCWGC 1 cut(s) 244
Tsp45I GTSAC 1 cut(s) 612
TspGWI ACGGA 1 cut(s) 227
TspRI CASTG 1 cut(s) 621
VpaK11BI GGWCC 2 cut(s) 644, 716
XapI RAATTY 3 cut(s) 82, 453, 667
XmnI GAANNNNTTC 1 cut(s) 584
XspI CTAG 1 cut(s) 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.