Rmu_sc0000170.1_g000007

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000170.1
OG0000281
Physical Location & Seq
Reverse (-)
30547 .. 31338
792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000170.1_g000007.1.cds

Sequence Viewer

Length: 792 bp
atgagaaccgtcttacttcacacgttactaaccattgcaaccattactactagtataggttcatgcaatggaaacctgggtgtgccttgtatagaaagcgaaaaacaagcgcttctcattttcaagcaagatcttaaagatccttcaaatcggctttcatcatgggttgctcaagaagattccaactgctgcaattgggctggagttgtctgtcattactccaccggccacatctatgagctacatcttgacaacccggtggcttccatctcttccttgggtggtaagataaatccttccctgctcaatttaacgcatcttacctacttgaacctaagtaacaataactttcaagggacaaagattcctggcttctttggttctcttaagagtttaactcatcttgacctctcagaagcaagcttcggaggaatggttccccatcaactgggaaatctttccagtctaagccatctctttcttggtggcgacggcctgaaagttgagaacctccaatggatttctggtctttctcggttggaacacctggacatgagtggtgttaatcttcgcaaagcatctgatcattggctgctagtgacaaacatgctcccctccttggtagaattacgcatggtctattgtcaacttcatagcattccacttctacctatcgtcagttttacttcacttgccatccttgatctttcttggaacgaatttagttctttcattcccgggtgggttttcagtcttagaaatctagttttgttgaaggaaaatcaagtttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

263

Amino Acids

28.98

Weight (kDa)

6.23

Isoelectric Point (pI)

31.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 448
AclWI GGATC 1 cut(s) 134
AcoI YGGCCR 1 cut(s) 226
AcsI RAATTY 1 cut(s) 719
AfeI AGCGCT 1 cut(s) 111
AfiI CCNNNNNNNGG 2 cut(s) 448, 619
AflII CTTAAG 1 cut(s) 386
AflIII ACRYGT 1 cut(s) 21
AgsI TTSAA 5 cut(s) 124, 147, 331, 353, 775
AhlI ACTAGT 1 cut(s) 50
AjnI CCWGG 3 cut(s) 75, 367, 546
AloI GAACNNNNNNTCC 2 cut(s) 420, 452
AluBI AGCT 2 cut(s) 241, 423
AluI AGCT 2 cut(s) 241, 423
AlwI GGATC 1 cut(s) 134
Ama87I CYCGRG 1 cut(s) 737
Aor51HI AGCGCT 1 cut(s) 111
AoxI GGCC 2 cut(s) 226, 493
ApeKI GCWGC 2 cut(s) 189, 592
ApoI RAATTY 1 cut(s) 719
Asp700I GAANNNNTTC 1 cut(s) 457
AspLEI GCGC 1 cut(s) 112
AsuC2I CCSGG 3 cut(s) 257, 738, 739
AvaI CYCGRG 1 cut(s) 737
BbvI GCAGC 2 cut(s) 176, 579
BccI CCATC 4 cut(s) 275, 450, 480, 704
BceAI ACGGC 1 cut(s) 508
BciT130I CCWGG 3 cut(s) 77, 369, 548
BclI TGATCA 1 cut(s) 583
BcnI CCSGG 3 cut(s) 257, 738, 739
BcuI ACTAGT 1 cut(s) 50
BfaI CTAG 3 cut(s) 51, 596, 764
BfoI RGCGCY 1 cut(s) 113
BfrI CTTAAG 1 cut(s) 386
BglII AGATCT 1 cut(s) 130
BisI GCNGC 2 cut(s) 190, 593
BlsI GCNGC 2 cut(s) 191, 594
Bme1390I CCNGG 6 cut(s) 77, 257, 369, 548, 738, 739
BmeT110I CYCGRG 1 cut(s) 737
BmiI GGNNCC 1 cut(s) 438
BmrFI CCNGG 6 cut(s) 77, 257, 369, 548, 738, 739
BmrI ACTGGG 1 cut(s) 458
BmsI GCATC 2 cut(s) 325, 587
BmuI ACTGGG 1 cut(s) 458
BplI GAGNNNNNCTC 2 cut(s) 382, 414
BpmI CTGGAG 1 cut(s) 222
BpuEI CTTGAG 1 cut(s) 156
BpuMI CCSGG 3 cut(s) 257, 738, 739
BsaJI CCNNGG 4 cut(s) 76, 276, 618, 737
BsaXI ACNNNNNCTCC 2 cut(s) 420, 450
Bsc4I CCNNNNNNNGG 2 cut(s) 448, 619
Bse118I RCCGGY 1 cut(s) 224
Bse1I ACTGG 2 cut(s) 453, 462
Bse3DI GCAATG 2 cut(s) 33, 73
BseBI CCWGG 3 cut(s) 77, 369, 548
BseDI CCNNGG 4 cut(s) 76, 276, 618, 737
BseGI GGATG 1 cut(s) 696
BseLI CCNNNNNNNGG 2 cut(s) 448, 619
BseMI GCAATG 2 cut(s) 33, 73
BseMII CTCAG 1 cut(s) 426
BseNI ACTGG 2 cut(s) 453, 462
BseXI GCAGC 2 cut(s) 176, 579
BshFI GGCC 2 cut(s) 228, 495
BsiHKCI CYCGRG 1 cut(s) 737
BsiSI CCGG 3 cut(s) 225, 257, 738
BslFI GGGAC 1 cut(s) 370
BslI CCNNNNNNNGG 2 cut(s) 448, 619
BsmFI GGGAC 1 cut(s) 370
BsmI GAATGC 1 cut(s) 657
BsnI GGCC 2 cut(s) 228, 495
BsoBI CYCGRG 1 cut(s) 737
Bsp143I GATC 4 cut(s) 130, 139, 583, 703
BspANI GGCC 2 cut(s) 228, 495
BspCNI CTCAG 1 cut(s) 425
BspLI GGNNCC 1 cut(s) 438
BspPI GGATC 1 cut(s) 134
BspTI CTTAAG 1 cut(s) 386
BsrDI GCAATG 2 cut(s) 33, 73
BsrFI RCCGGY 1 cut(s) 224
BsrI ACTGG 2 cut(s) 453, 462
BssAI RCCGGY 1 cut(s) 224
BssECI CCNNGG 4 cut(s) 76, 276, 618, 737
BssMI GATC 4 cut(s) 130, 139, 583, 703
BssT1I CCWWGG 2 cut(s) 276, 618
Bst2UI CCWGG 3 cut(s) 77, 369, 548
Bst4CI ACNGT 1 cut(s) 10
Bst6I CTCTTC 1 cut(s) 277
BstAFI CTTAAG 1 cut(s) 386
BstC8I GCNNGC 1 cut(s) 421
BstDEI CTNAG 4 cut(s) 335, 412, 467, 755
BstF5I GGATG 1 cut(s) 696
BstH2I RGCGCY 1 cut(s) 113
BstHHI GCGC 1 cut(s) 112
BstKTI GATC 4 cut(s) 133, 142, 586, 706
BstMBI GATC 4 cut(s) 130, 139, 583, 703
BstNI CCWGG 3 cut(s) 77, 369, 548
BstNSI RCATGY 1 cut(s) 610
BstSCI CCNGG 6 cut(s) 75, 255, 367, 546, 736, 737
BstV1I GCAGC 2 cut(s) 176, 579
BstX2I RGATCY 2 cut(s) 130, 139
BstYI RGATCY 2 cut(s) 130, 139
BsuRI GGCC 2 cut(s) 228, 495
BtsCI GGATG 1 cut(s) 696
Cac8I GCNNGC 1 cut(s) 421
CfoI GCGC 1 cut(s) 112
Cfr10I RCCGGY 1 cut(s) 224
Cfr9I CCCGGG 1 cut(s) 737
CviAII CATG 5 cut(s) 63, 162, 553, 607, 634
DdeI CTNAG 4 cut(s) 335, 412, 467, 755
DpnI GATC 4 cut(s) 132, 141, 585, 705
DpnII GATC 4 cut(s) 130, 139, 583, 703
EaeI YGGCCR 1 cut(s) 226
Eam1104I CTCTTC 1 cut(s) 277
EarI CTCTTC 1 cut(s) 277
Eco130I CCWWGG 2 cut(s) 276, 618
Eco47III AGCGCT 1 cut(s) 111
Eco88I CYCGRG 1 cut(s) 737
EcoRII CCWGG 3 cut(s) 75, 367, 546
EcoT14I CCWWGG 2 cut(s) 276, 618
ErhI CCWWGG 2 cut(s) 276, 618
FaeI CATG 5 cut(s) 66, 165, 556, 610, 637
FaiI YATR 9 cut(s) 56, 64, 92, 163, 237, 554, 608, 635, 654
FaqI GGGAC 1 cut(s) 370
FatI CATG 5 cut(s) 62, 161, 552, 606, 633
FbaI TGATCA 1 cut(s) 583
Fnu4HI GCNGC 2 cut(s) 190, 593
FokI GGATG 1 cut(s) 683
Fsp4HI GCNGC 2 cut(s) 190, 593
FspBI CTAG 3 cut(s) 51, 596, 764
GlaI GCGC 1 cut(s) 111
GluI GCNGC 2 cut(s) 190, 593
GsuI CTGGAG 1 cut(s) 222
HaeII RGCGCY 1 cut(s) 113
HaeIII GGCC 2 cut(s) 228, 495
HapII CCGG 3 cut(s) 225, 257, 738
HhaI GCGC 1 cut(s) 112
Hin1II CATG 5 cut(s) 66, 165, 556, 610, 637
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HincII GTYRAC 1 cut(s) 647
HindII GTYRAC 1 cut(s) 647
HindIII AAGCTT 1 cut(s) 421
HinfI GANTC 2 cut(s) 179, 364
HpaII CCGG 3 cut(s) 225, 257, 738
Hpy166II GTNNAC 1 cut(s) 647
Hpy188I TCNGA 3 cut(s) 415, 428, 583
Hpy188III TCNNGA 3 cut(s) 173, 248, 404
Hpy8I GTNNAC 1 cut(s) 647
Hpy99I CGWCG 1 cut(s) 494
HpyAV CCTTC 3 cut(s) 153, 306, 769
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4IV ACGT 1 cut(s) 23
HpyCH4V TGCA 3 cut(s) 38, 66, 192
HpyF3I CTNAG 4 cut(s) 335, 412, 467, 755
HpySE526I ACGT 1 cut(s) 23
Hsp92II CATG 5 cut(s) 66, 165, 556, 610, 637
HspAI GCGC 1 cut(s) 110
Ksp22I TGATCA 1 cut(s) 583
Kzo9I GATC 4 cut(s) 130, 139, 583, 703
LmnI GCTCC 1 cut(s) 615
Lsp1109I GCAGC 2 cut(s) 176, 579
LweI GCATC 2 cut(s) 325, 587
MaeI CTAG 3 cut(s) 51, 596, 764
MaeII ACGT 1 cut(s) 23
MaeIII GTNAC 3 cut(s) 24, 338, 598
MalI GATC 4 cut(s) 132, 141, 585, 705
MboI GATC 4 cut(s) 130, 139, 583, 703
MboII GAAGA 3 cut(s) 188, 264, 560
MfeI CAATTG 1 cut(s) 193
MflI RGATCY 2 cut(s) 130, 139
MluCI AATT 4 cut(s) 193, 307, 626, 719
MmeI TCCRAC 2 cut(s) 207, 519
MnlI CCTC 4 cut(s) 419, 422, 521, 625
MroXI GAANNNNTTC 1 cut(s) 457
MseI TTAA 5 cut(s) 135, 311, 387, 395, 564
MslI CAYNNNNRTG 1 cut(s) 234
MspCI CTTAAG 1 cut(s) 386
MspI CCGG 3 cut(s) 225, 257, 738
MspR9I CCNGG 6 cut(s) 77, 257, 369, 548, 738, 739
MunI CAATTG 1 cut(s) 193
Mva1269I GAATGC 1 cut(s) 657
MvaI CCWGG 3 cut(s) 77, 369, 548
NciI CCSGG 3 cut(s) 257, 738, 739
NdeII GATC 4 cut(s) 130, 139, 583, 703
NlaIII CATG 5 cut(s) 66, 165, 556, 610, 637
NlaIV GGNNCC 1 cut(s) 438
NmuCI GTSAC 1 cut(s) 598
NspI RCATGY 1 cut(s) 610
PctI GAATGC 1 cut(s) 657
PdmI GAANNNNTTC 1 cut(s) 457
PfeI GAWTC 2 cut(s) 179, 364
PflMI CCANNNNNTGG 1 cut(s) 448
PkrI GCNGC 2 cut(s) 191, 594
Psp6I CCWGG 3 cut(s) 75, 367, 546
PspGI CCWGG 3 cut(s) 75, 367, 546
PspN4I GGNNCC 1 cut(s) 438
PsuI RGATCY 2 cut(s) 130, 139
RseI CAYNNNNRTG 1 cut(s) 234
SaqAI TTAA 5 cut(s) 135, 311, 387, 395, 564
SatI GCNGC 2 cut(s) 190, 593
Sau3AI GATC 4 cut(s) 130, 139, 583, 703
ScrFI CCNGG 6 cut(s) 77, 257, 369, 548, 738, 739
SfaNI GCATC 2 cut(s) 325, 587
SmaI CCCGGG 1 cut(s) 739
SmiMI CAYNNNNRTG 1 cut(s) 234
SmlI CTYRAG 2 cut(s) 171, 386
SmoI CTYRAG 2 cut(s) 171, 386
SpeI ACTAGT 1 cut(s) 50
Sse9I AATT 4 cut(s) 193, 307, 626, 719
SspMI CTAG 3 cut(s) 51, 596, 764
StyD4I CCNGG 6 cut(s) 75, 255, 367, 546, 736, 737
StyI CCWWGG 2 cut(s) 276, 618
TaaI ACNGT 1 cut(s) 10
TaiI ACGT 1 cut(s) 26
TasI AATT 4 cut(s) 193, 307, 626, 719
TfiI GAWTC 2 cut(s) 179, 364
Tru1I TTAA 5 cut(s) 135, 311, 387, 395, 564
Tru9I TTAA 5 cut(s) 135, 311, 387, 395, 564
TseFI GTSAC 1 cut(s) 598
TseI GCWGC 2 cut(s) 189, 592
Tsp45I GTSAC 1 cut(s) 598
TspDTI ATGAA 4 cut(s) 51, 147, 641, 721
TspMI CCCGGG 1 cut(s) 737
Van91I CCANNNNNTGG 1 cut(s) 448
Vha464I CTTAAG 1 cut(s) 386
XapI RAATTY 1 cut(s) 719
XceI RCATGY 1 cut(s) 610
XcmI CCANNNNNNNNNTGG 3 cut(s) 274, 479, 521
XmaI CCCGGG 1 cut(s) 737
XmnI GAANNNNTTC 1 cut(s) 457
XspI CTAG 3 cut(s) 51, 596, 764
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.