pycom15g38040

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
37943019 .. 37943935
917 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g38040.3

Sequence Viewer

Length: 654 bp
ATGATTTTTAAAACTAATTTAAGTCGATCAATTATTGCTATATATGGTCCTGACGTTTCTTTAGGGCACTCCTCTAAATTACTCATTCCTCACATCCATCACCTACTCCATTTCTATACGATGACAGTCATGACACTTGTTTACCTACTCACCTTTCTTCTATCCATTGCGTCTTTTACACTTACCTTATGCAATGGAAACCTGGTCCATTTGCCTTGCAAAGAAAATGAGAGACAAACACTTCTTATGTTCAAGAACGATCTCAATGATTCTTCAAATATGCTTTCCTCTTGGGATGGTGAAGGTGATTGTTGCAACTGGACCGGTGTTACCTGCAGTAATTTAACCGGTCATGTCCATGAGCTCCACCTTGCTGGTTATTTGGATGAAGTGACTGGTGAGAACCGTAAGCTGGGTGGCAAGGTAAATCCTTCTCTACTCAATTTAAAGCATCTCAGCCACTTGGACTTAAGGTTCAACGGAACCATTCCTCATCAGTTGGGAAATCTCTCAAGTCTACGTTATCTCGACCTTTCTTACAACTTTGATTTGATGGTCGAGAATCTTGAATGGCTCTCTGGTCTTTCTCAGTTGAAACATCTTGACATGAGTTCAGTAGATCGATCACTAACGCATCTCGTTGGTTACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

218

Amino Acids

24.45

Weight (kDa)

6.37

Isoelectric Point (pI)

16.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 341
AccI GTMKAC 1 cut(s) 517
AfiI CCNNNNNNNGG 1 cut(s) 412
AflII CTTAAG 1 cut(s) 469
AgeI ACCGGT 2 cut(s) 323, 347
AgsI TTSAA 5 cut(s) 253, 276, 478, 569, 595
AjnI CCWGG 1 cut(s) 201
AloI GAACNNNNNNTCC 2 cut(s) 458, 490
AluBI AGCT 2 cut(s) 364, 412
AluI AGCT 2 cut(s) 364, 412
Alw21I GWGCWC 1 cut(s) 366
Alw26I GTCTC 1 cut(s) 226
AsiGI ACCGGT 2 cut(s) 323, 347
AspS9I GGNCC 3 cut(s) 47, 205, 321
AsuHPI GGTGA 5 cut(s) 92, 142, 311, 317, 410
AvaII GGWCC 3 cut(s) 47, 205, 321
BaeGI GKGCMC 1 cut(s) 69
BanII GRGCYC 1 cut(s) 366
Bbv12I GWGCWC 1 cut(s) 366
BccI CCATC 3 cut(s) 105, 290, 547
BciT130I CCWGG 1 cut(s) 203
BcoDI GTCTC 1 cut(s) 226
BfmI CTRYAG 1 cut(s) 334
BfrI CTTAAG 1 cut(s) 469
BfuAI ACCTGC 1 cut(s) 341
Bme1390I CCNGG 1 cut(s) 203
Bme18I GGWCC 3 cut(s) 47, 205, 321
BmgT120I GGNCC 3 cut(s) 47, 205, 321
BmiI GGNNCC 1 cut(s) 484
BmrFI CCNGG 1 cut(s) 203
BmsI GCATC 2 cut(s) 460, 643
BpuEI CTTGAG 1 cut(s) 496
Bsa29I ATCGAT 1 cut(s) 622
BsaWI WCCGGW 2 cut(s) 323, 347
Bsc4I CCNNNNNNNGG 1 cut(s) 412
Bse118I RCCGGY 2 cut(s) 323, 347
Bse1I ACTGG 2 cut(s) 323, 400
Bse3DI GCAATG 2 cut(s) 165, 199
BseBI CCWGG 1 cut(s) 203
BseCI ATCGAT 1 cut(s) 622
BseGI GGATG 3 cut(s) 93, 301, 391
BseLI CCNNNNNNNGG 1 cut(s) 412
BseMI GCAATG 2 cut(s) 165, 199
BseMII CTCAG 2 cut(s) 469, 602
BseNI ACTGG 2 cut(s) 323, 400
BseRI GAGGAG 1 cut(s) 61
BseSI GKGCMC 1 cut(s) 69
BseYI CCCAGC 1 cut(s) 412
BshTI ACCGGT 2 cut(s) 323, 347
BshVI ATCGAT 1 cut(s) 622
BsiHKAI GWGCWC 1 cut(s) 366
BsiSI CCGG 2 cut(s) 324, 348
BslI CCNNNNNNNGG 1 cut(s) 412
BsmAI GTCTC 1 cut(s) 226
Bsp1286I GDGCHC 2 cut(s) 69, 366
Bsp143I GATC 4 cut(s) 26, 259, 619, 623
BspCNI CTCAG 2 cut(s) 468, 601
BspDI ATCGAT 1 cut(s) 622
BspHI TCATGA 1 cut(s) 129
BspLI GGNNCC 1 cut(s) 484
BspMAI CTGCAG 1 cut(s) 338
BspMI ACCTGC 1 cut(s) 341
BspTI CTTAAG 1 cut(s) 469
BsrDI GCAATG 2 cut(s) 165, 199
BsrFI RCCGGY 2 cut(s) 323, 347
BsrI ACTGG 2 cut(s) 323, 400
BssAI RCCGGY 2 cut(s) 323, 347
BssMI GATC 4 cut(s) 26, 259, 619, 623
Bst2UI CCWGG 1 cut(s) 203
Bst4CI ACNGT 2 cut(s) 127, 407
BstAFI CTTAAG 1 cut(s) 469
BstDEI CTNAG 2 cut(s) 455, 588
BstF5I GGATG 3 cut(s) 93, 301, 391
BstKTI GATC 4 cut(s) 29, 262, 622, 626
BstMAI GTCTC 1 cut(s) 226
BstMBI GATC 4 cut(s) 26, 259, 619, 623
BstNI CCWGG 1 cut(s) 203
BstSCI CCNGG 1 cut(s) 201
BstSFI CTRYAG 1 cut(s) 334
BstSLI GKGCMC 1 cut(s) 69
BstXI CCANNNNNNTGG 1 cut(s) 374
Bsu15I ATCGAT 1 cut(s) 622
BsuTUI ATCGAT 1 cut(s) 622
BtsCI GGATG 3 cut(s) 93, 301, 391
BveI ACCTGC 1 cut(s) 341
CciI TCATGA 1 cut(s) 129
Cfr10I RCCGGY 2 cut(s) 323, 347
Cfr13I GGNCC 3 cut(s) 47, 205, 321
ClaI ATCGAT 1 cut(s) 622
CseI GACGC 1 cut(s) 159
CsiI ACCWGGT 1 cut(s) 201
CspAI ACCGGT 2 cut(s) 323, 347
CviAII CATG 4 cut(s) 130, 353, 359, 607
CviJI RGCY 4 cut(s) 364, 412, 459, 574
CviKI_1 RGCY 4 cut(s) 364, 412, 459, 574
DdeI CTNAG 2 cut(s) 455, 588
DpnI GATC 4 cut(s) 28, 261, 621, 625
DpnII GATC 4 cut(s) 26, 259, 619, 623
DraI TTTAAA 2 cut(s) 10, 447
Ecl136II GAGCTC 1 cut(s) 364
Eco24I GRGCYC 1 cut(s) 366
Eco47I GGWCC 3 cut(s) 47, 205, 321
Eco53kI GAGCTC 1 cut(s) 364
EcoICRI GAGCTC 1 cut(s) 364
EcoRII CCWGG 1 cut(s) 201
EcoT38I GRGCYC 1 cut(s) 366
FaeI CATG 4 cut(s) 133, 356, 362, 610
FatI CATG 4 cut(s) 129, 352, 358, 606
FblI GTMKAC 1 cut(s) 517
FokI GGATG 3 cut(s) 80, 308, 398
FriOI GRGCYC 1 cut(s) 366
GsaI CCCAGC 1 cut(s) 416
HapII CCGG 2 cut(s) 324, 348
HgaI GACGC 1 cut(s) 159
Hin1II CATG 4 cut(s) 133, 356, 362, 610
HinfI GANTC 2 cut(s) 269, 562
HpaII CCGG 2 cut(s) 324, 348
HphI GGTGA 5 cut(s) 92, 142, 311, 317, 410
Hpy166II GTNNAC 2 cut(s) 142, 518
Hpy188III TCNNGA 7 cut(s) 50, 130, 253, 527, 559, 566, 602
Hpy8I GTNNAC 2 cut(s) 142, 518
HpyAV CCTTC 2 cut(s) 296, 441
HpyCH4III ACNGT 2 cut(s) 127, 407
HpyCH4IV ACGT 2 cut(s) 54, 520
HpyCH4V TGCA 4 cut(s) 192, 219, 315, 336
HpyF3I CTNAG 2 cut(s) 455, 588
HpySE526I ACGT 2 cut(s) 54, 520
Hsp92II CATG 4 cut(s) 133, 356, 362, 610
Kzo9I GATC 4 cut(s) 26, 259, 619, 623
LmnI GCTCC 1 cut(s) 369
LweI GCATC 2 cut(s) 460, 643
MabI ACCWGGT 1 cut(s) 201
MaeII ACGT 2 cut(s) 54, 520
MaeIII GTNAC 3 cut(s) 328, 391, 644
MalI GATC 4 cut(s) 28, 261, 621, 625
MboI GATC 4 cut(s) 26, 259, 619, 623
MboII GAAGA 2 cut(s) 149, 264
MhlI GDGCHC 2 cut(s) 69, 366
MluCI AATT 5 cut(s) 16, 30, 77, 340, 442
MnlI CCTC 4 cut(s) 82, 99, 298, 501
MseI TTAA 5 cut(s) 9, 20, 344, 446, 470
MslI CAYNNNNRTG 1 cut(s) 357
MspCI CTTAAG 1 cut(s) 469
MspI CCGG 2 cut(s) 324, 348
MspR9I CCNGG 1 cut(s) 203
MvaI CCWGG 1 cut(s) 203
NdeII GATC 4 cut(s) 26, 259, 619, 623
NlaIII CATG 4 cut(s) 133, 356, 362, 610
NlaIV GGNNCC 1 cut(s) 484
NmuCI GTSAC 1 cut(s) 391
PagI TCATGA 1 cut(s) 129
PfeI GAWTC 2 cut(s) 269, 562
PinAI ACCGGT 2 cut(s) 323, 347
Psp124BI GAGCTC 1 cut(s) 366
Psp6I CCWGG 1 cut(s) 201
PspFI CCCAGC 1 cut(s) 412
PspGI CCWGG 1 cut(s) 201
PspN4I GGNNCC 1 cut(s) 484
PspPI GGNCC 3 cut(s) 47, 205, 321
PstI CTGCAG 1 cut(s) 338
RseI CAYNNNNRTG 1 cut(s) 357
SacI GAGCTC 1 cut(s) 366
SaqAI TTAA 5 cut(s) 9, 20, 344, 446, 470
Sau3AI GATC 4 cut(s) 26, 259, 619, 623
Sau96I GGNCC 3 cut(s) 47, 205, 321
ScrFI CCNGG 1 cut(s) 203
SduI GDGCHC 2 cut(s) 69, 366
SexAI ACCWGGT 1 cut(s) 201
SfaNI GCATC 2 cut(s) 460, 643
SfcI CTRYAG 1 cut(s) 334
SinI GGWCC 3 cut(s) 47, 205, 321
SmiMI CAYNNNNRTG 1 cut(s) 357
SmlI CTYRAG 2 cut(s) 469, 511
SmoI CTYRAG 2 cut(s) 469, 511
Sse9I AATT 5 cut(s) 16, 30, 77, 340, 442
SstI GAGCTC 1 cut(s) 366
StyD4I CCNGG 1 cut(s) 201
TaaI ACNGT 2 cut(s) 127, 407
TaiI ACGT 2 cut(s) 57, 523
TaqI TCGA 4 cut(s) 25, 528, 558, 622
TasI AATT 5 cut(s) 16, 30, 77, 340, 442
TfiI GAWTC 2 cut(s) 269, 562
Tru1I TTAA 5 cut(s) 9, 20, 344, 446, 470
Tru9I TTAA 5 cut(s) 9, 20, 344, 446, 470
TseFI GTSAC 1 cut(s) 391
Tsp45I GTSAC 1 cut(s) 391
TspDTI ATGAA 1 cut(s) 402
TspGWI ACGGA 1 cut(s) 495
Vha464I CTTAAG 1 cut(s) 469
VpaK11BI GGWCC 3 cut(s) 47, 205, 321
XmiI GTMKAC 1 cut(s) 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.