Rh3BG125200

Leucine rich repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000281
Physical Location & Seq
Reverse (-)
10291047 .. 10310942
19896 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG125200.1

Sequence Viewer

Length: 849 bp
ATGAATCTCTCCCGGAATTTTCTTAATCATTCGATACCTGAGTGGTTGTTTAACCACAAAGACCTCACTCTTTTGGACCTGGGACACAATGACCTTGAAGGGCCACTGCCAGATGGTATGATGAATATGACTGGTCTTAAAGTTCTTTATCTCAAAACAAACCTTCTCAATTCAACCATACCAGAGTGGTTGTATGGTTTAAACCATCTTGAGTCCTTAATTCTTTCTTTCAATAACTTCCACGGTGAAATTTCAAGTTCCATTGGAAACTTGACATCCATCATCAACCTAAAGTTCGAGCAGAATCTGTTGGAAGGAAAAATCCCAAAGTCACTGGGAAATCTTTGTAAATTGGTGGTTCTTGATCTTTCATGGAGCCGATTCACGCTTGGAAGGTTATCAGAATTTTTTGAAACTTTGTCTGTTTGTGGTTCAAATAGAATGAAGTCATTGTCTTTGGAATCTTGTGATCTTTCTGGTCGGTTAACAGAGCAGGTAGGAATCTTTACAAACTTGAGCGTCCTTGAACTTTCTGATAATTCATTATCAGGTCCCATTCCAGTGTCCCTGGGAAATCTATCACGCTTGGAAGAATTTAACATCCATAGCAATCAGTTCAATGGAACTCTTCCAGAAATCATTGGTCAACTCAAAATGCTAACGATTTTGGATATCTCCCATAATTCATTGGAAGGTTATGAAATTGCCTCTAATCGATATGAACCTCCAAGCGATGGTCTTAGCCAAACCTCAATGAGGCACAACATTAGAGAGCAAGTAAGCTGTGTTGTACTAACGAAAGGGGTACATTGCACCATCAGTGAATGCCATGGGCAGGTGATGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8

Protein Analysis

282

Amino Acids

31.44

Weight (kDa)

5.43

Isoelectric Point (pI)

33.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 41 - 80 4.6e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 826
Acc36I ACCTGC 2 cut(s) 484, 826
AccB7I CCANNNNNTGG 1 cut(s) 734
AcsI RAATTY 4 cut(s) 16, 249, 404, 593
AfaI GTAC 2 cut(s) 792, 807
AfiI CCNNNNNNNGG 3 cut(s) 734, 756, 835
AgsI TTSAA 8 cut(s) 98, 174, 232, 255, 413, 435, 527, 619
AjnI CCWGG 2 cut(s) 78, 567
AluBI AGCT 1 cut(s) 783
AluI AGCT 1 cut(s) 783
AlwNI CAGNNNCTG 1 cut(s) 307
AoxI GGCC 1 cut(s) 101
ApoI RAATTY 4 cut(s) 16, 249, 404, 593
AspS9I GGNCC 3 cut(s) 76, 101, 551
AsuC2I CCSGG 1 cut(s) 13
AsuHPI GGTGA 1 cut(s) 257
AvaII GGWCC 2 cut(s) 76, 551
BaeI ACNNNNGTAYC 2 cut(s) 26, 59
BccI CCATC 5 cut(s) 107, 213, 287, 728, 824
BciT130I CCWGG 2 cut(s) 80, 569
BcnI CCSGG 1 cut(s) 13
BfuAI ACCTGC 2 cut(s) 484, 826
Bme1390I CCNGG 3 cut(s) 13, 80, 569
Bme18I GGWCC 2 cut(s) 76, 551
BmgT120I GGNCC 3 cut(s) 76, 101, 551
BmiI GGNNCC 2 cut(s) 377, 553
BmrFI CCNGG 3 cut(s) 13, 80, 569
BmrI ACTGGG 1 cut(s) 344
BmuI ACTGGG 1 cut(s) 344
BpuEI CTTGAG 2 cut(s) 230, 535
BpuMI CCSGG 1 cut(s) 13
Bsa29I ATCGAT 1 cut(s) 715
BsaJI CCNNGG 5 cut(s) 79, 241, 567, 568, 829
Bsc4I CCNNNNNNNGG 3 cut(s) 734, 756, 835
Bse1I ACTGG 3 cut(s) 136, 339, 560
Bse3DI GCAATG 1 cut(s) 808
BseBI CCWGG 2 cut(s) 80, 569
BseCI ATCGAT 1 cut(s) 715
BseDI CCNNGG 5 cut(s) 79, 241, 567, 568, 829
BseGI GGATG 2 cut(s) 275, 600
BseLI CCNNNNNNNGG 3 cut(s) 734, 756, 835
BseMI GCAATG 1 cut(s) 808
BseMII CTCAG 1 cut(s) 30
BseNI ACTGG 3 cut(s) 136, 339, 560
BshFI GGCC 1 cut(s) 103
BshVI ATCGAT 1 cut(s) 715
BsiSI CCGG 1 cut(s) 13
BslFI GGGAC 3 cut(s) 96, 537, 550
BslI CCNNNNNNNGG 3 cut(s) 734, 756, 835
BsmFI GGGAC 3 cut(s) 96, 537, 550
BsmI GAATGC 1 cut(s) 830
BsnI GGCC 1 cut(s) 103
Bsp143I GATC 2 cut(s) 364, 469
Bsp19I CCATGG 1 cut(s) 829
BspANI GGCC 1 cut(s) 103
BspCNI CTCAG 1 cut(s) 31
BspDI ATCGAT 1 cut(s) 715
BspLI GGNNCC 2 cut(s) 377, 553
BspMI ACCTGC 2 cut(s) 484, 826
BsrDI GCAATG 1 cut(s) 808
BsrI ACTGG 3 cut(s) 136, 339, 560
BssECI CCNNGG 5 cut(s) 79, 241, 567, 568, 829
BssMI GATC 2 cut(s) 364, 469
BssT1I CCWWGG 1 cut(s) 829
Bst2UI CCWGG 2 cut(s) 80, 569
Bst4CI ACNGT 1 cut(s) 245
Bst6I CTCTTC 1 cut(s) 633
BstDEI CTNAG 2 cut(s) 39, 740
BstDSI CCRYGG 2 cut(s) 241, 829
BstENI CCTNNNNNAGG 1 cut(s) 754
BstF5I GGATG 2 cut(s) 275, 600
BstKTI GATC 2 cut(s) 367, 472
BstMBI GATC 2 cut(s) 364, 469
BstNI CCWGG 2 cut(s) 80, 569
BstSCI CCNGG 3 cut(s) 11, 78, 567
Bsu15I ATCGAT 1 cut(s) 715
BsuRI GGCC 1 cut(s) 103
BsuTUI ATCGAT 1 cut(s) 715
BtgI CCRYGG 2 cut(s) 241, 829
BtgZI GCGATG 1 cut(s) 747
BtsCI GGATG 2 cut(s) 275, 600
BtsI GCAGTG 1 cut(s) 104
BtsIMutI CAGTG 4 cut(s) 104, 332, 567, 826
BveI ACCTGC 2 cut(s) 484, 826
CaiI CAGNNNCTG 1 cut(s) 307
Cfr13I GGNCC 3 cut(s) 76, 101, 551
ClaI ATCGAT 1 cut(s) 715
CseI GACGC 1 cut(s) 508
Csp6I GTAC 2 cut(s) 791, 806
CviAII CATG 2 cut(s) 372, 830
CviJI RGCY 4 cut(s) 103, 378, 744, 783
CviKI_1 RGCY 4 cut(s) 103, 378, 744, 783
CviQI GTAC 2 cut(s) 791, 806
DdeI CTNAG 2 cut(s) 39, 740
DpnI GATC 2 cut(s) 366, 471
DpnII GATC 2 cut(s) 364, 469
DraI TTTAAA 1 cut(s) 201
Eam1104I CTCTTC 1 cut(s) 633
EarI CTCTTC 1 cut(s) 633
Eco130I CCWWGG 1 cut(s) 829
Eco32I GATATC 1 cut(s) 673
Eco47I GGWCC 2 cut(s) 76, 551
EcoNI CCTNNNNNAGG 1 cut(s) 754
EcoO109I RGGNCCY 1 cut(s) 551
EcoRII CCWGG 2 cut(s) 78, 567
EcoRV GATATC 1 cut(s) 673
EcoT14I CCWWGG 1 cut(s) 829
ErhI CCWWGG 1 cut(s) 829
FaeI CATG 2 cut(s) 375, 833
FaqI GGGAC 3 cut(s) 96, 537, 550
FatI CATG 2 cut(s) 371, 829
FokI GGATG 2 cut(s) 262, 587
HaeIII GGCC 1 cut(s) 103
HapII CCGG 1 cut(s) 13
HgaI GACGC 1 cut(s) 508
Hin1II CATG 2 cut(s) 375, 833
HincII GTYRAC 2 cut(s) 486, 647
HindII GTYRAC 2 cut(s) 486, 647
HinfI GANTC 6 cut(s) 4, 212, 304, 381, 461, 501
HpaI GTTAAC 1 cut(s) 486
HpaII CCGG 1 cut(s) 13
HphI GGTGA 1 cut(s) 257
Hpy166II GTNNAC 2 cut(s) 486, 647
Hpy188I TCNGA 2 cut(s) 403, 535
Hpy188III TCNNGA 3 cut(s) 209, 362, 632
Hpy8I GTNNAC 2 cut(s) 486, 647
HpyAV CCTTC 5 cut(s) 92, 173, 308, 387, 686
HpyCH4III ACNGT 1 cut(s) 245
HpyCH4V TGCA 1 cut(s) 813
HpyF3I CTNAG 2 cut(s) 39, 740
Hsp92II CATG 2 cut(s) 375, 833
KspAI GTTAAC 1 cut(s) 486
Kzo9I GATC 2 cut(s) 364, 469
LmnI GCTCC 1 cut(s) 375
MaeIII GTNAC 1 cut(s) 330
MalI GATC 2 cut(s) 366, 471
MboI GATC 2 cut(s) 364, 469
MboII GAAGA 2 cut(s) 602, 620
MlyI GAGTC 1 cut(s) 221
MmeI TCCRAC 1 cut(s) 291
MnlI CCTC 5 cut(s) 74, 718, 735, 750, 760
MseI TTAA 7 cut(s) 24, 51, 138, 200, 218, 485, 597
MslI CAYNNNNRTG 1 cut(s) 560
MspI CCGG 1 cut(s) 13
MspR9I CCNGG 3 cut(s) 13, 80, 569
MssI GTTTAAAC 1 cut(s) 201
Mva1269I GAATGC 1 cut(s) 830
MvaI CCWGG 2 cut(s) 80, 569
NciI CCSGG 1 cut(s) 13
NcoI CCATGG 1 cut(s) 829
NdeII GATC 2 cut(s) 364, 469
NlaIII CATG 2 cut(s) 375, 833
NlaIV GGNNCC 2 cut(s) 377, 553
NmuCI GTSAC 1 cut(s) 330
PaqCI CACCTGC 1 cut(s) 826
PasI CCCWGGG 1 cut(s) 568
PctI GAATGC 1 cut(s) 830
PfeI GAWTC 5 cut(s) 4, 304, 381, 461, 501
PflMI CCANNNNNTGG 1 cut(s) 734
PfoI TCCNGGA 1 cut(s) 11
PleI GAGTC 1 cut(s) 220
PmeI GTTTAAAC 1 cut(s) 201
PpsI GAGTC 1 cut(s) 220
PpuMI RGGWCCY 1 cut(s) 551
Psp5II RGGWCCY 1 cut(s) 551
Psp6I CCWGG 2 cut(s) 78, 567
PspGI CCWGG 2 cut(s) 78, 567
PspN4I GGNNCC 2 cut(s) 377, 553
PspPI GGNCC 3 cut(s) 76, 101, 551
PspPPI RGGWCCY 1 cut(s) 551
PstNI CAGNNNCTG 1 cut(s) 307
RsaI GTAC 2 cut(s) 792, 807
RsaNI GTAC 2 cut(s) 791, 806
RseI CAYNNNNRTG 1 cut(s) 560
SaqAI TTAA 7 cut(s) 24, 51, 138, 200, 218, 485, 597
Sau3AI GATC 2 cut(s) 364, 469
Sau96I GGNCC 3 cut(s) 76, 101, 551
SchI GAGTC 1 cut(s) 221
ScrFI CCNGG 3 cut(s) 13, 80, 569
SinI GGWCC 2 cut(s) 76, 551
SmiMI CAYNNNNRTG 1 cut(s) 560
SmlI CTYRAG 2 cut(s) 209, 514
SmoI CTYRAG 2 cut(s) 209, 514
StyD4I CCNGG 3 cut(s) 11, 78, 567
StyI CCWWGG 1 cut(s) 829
TaaI ACNGT 1 cut(s) 245
TaqI TCGA 3 cut(s) 32, 297, 715
TatI WGTACW 1 cut(s) 790
TfiI GAWTC 5 cut(s) 4, 304, 381, 461, 501
Tru1I TTAA 7 cut(s) 24, 51, 138, 200, 218, 485, 597
Tru9I TTAA 7 cut(s) 24, 51, 138, 200, 218, 485, 597
TscAI CASTG 4 cut(s) 111, 339, 567, 826
TseFI GTSAC 1 cut(s) 330
Tsp45I GTSAC 1 cut(s) 330
TspDTI ATGAA 8 cut(s) 17, 137, 360, 458, 531, 675, 714, 735
TspRI CASTG 4 cut(s) 111, 339, 567, 826
Van91I CCANNNNNTGG 1 cut(s) 734
VpaK11BI GGWCC 2 cut(s) 76, 551
XagI CCTNNNNNAGG 1 cut(s) 754
XapI RAATTY 4 cut(s) 16, 249, 404, 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.