pycom12g20310

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0000281
Physical Location & Seq
Reverse (-)
21874288 .. 21875340
1053 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g20310.1

Sequence Viewer

Length: 1053 bp
ATGGGGAAAATTCCAAGCTCTATTGGAGACTTACTTTCCCTTCGATCATTGCACTTGCGAAATAATAACCTATCTGGAGAATTACCGGTGTCCTTACAAAACTGTGAGAAGTTGGTACTTCTTGACCTTGGTGGAAACAAGTTCGTTGGAAGCATTCCAATATGGTTCGGCCAAAGATTGGTAGTTCTTAGTCTTCATTCAAATAAGTTCCATGGCGCCATTCCAGATGAACTCTGTAGTCTCACATCTCTCCAAATCTTGGACCTTGCGCATAACAATCTCTCAGGAACAATACCAAGGTGTTTTCAAAATTTGTCATCCATGGCCACTACCTCTTTAGGTGCTAGCGGATTTACCCGTATTGGAGTTTTCAGTGTTGAGTTTGATCATTTTGATGGTTTTGATTATTTTGAGGAGACATACATGGAGAATGTAGTATTTGTGACCAAGGGCAGAGAAGTGAAATATGACACAAAGCTTGGGTTGGTAGTTACTCTGGACCTTTCAAGCAACATGTTATCTGGAGAAATCCCTGAAGAGCTGGCCAGCCTCGGTGGCATACAAACGTTGAATTTATCTGATAATCTTCTGAGTGGAAGGATCCCTTCGAAGATCGGTGATATGGGATCGTTAGAATCGCTTGATTTGTCTGTAAACCAACTTTATGGCGAAATTTCTCCAAGCATCTCAAATTTGACATTTCTCAGTTATCTGAATTTGTCCTATAACAATCTGATTGGTCCGATTCCGAAAAGCACTCAACTCCAGAGCTTTGATCTGTCCAGTTTTGTTGGTAATAAACTTTGTGGACCTCCATTGGAAGAGCGTTGCAATACAAATGAGGCCATGCCACCGGCAAGTGATGAGAAGCACGGAGAAGGTCATTTACTTAAAGACGGTGGGTTCTATCTGAGCTTGGGGCTTGGATTTGCATTAGGGTTTTGGATTGTTCTTGGTTCATTGTTATCTAATGTGCCATGGAGCAATGCATTGTGTCAATTCCAAAATCGCATTGTGAAGAAGCTTTATACTGCAATCATTGAACGTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

351

Amino Acids

38.26

Weight (kDa)

5.19

Isoelectric Point (pI)

30.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 7 - 90 8.9e-06 Leucine-rich repeat region
LRR_8 PF13855 59 - 108 1.4e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 270
AccB1I GGYRCC 1 cut(s) 215
AccB7I CCANNNNNTGG 2 cut(s) 178, 259
AciI CCGC 1 cut(s) 348
AclI AACGTT 2 cut(s) 566, 1045
AclWI GGATC 3 cut(s) 595, 608, 634
AcoI YGGCCR 3 cut(s) 169, 324, 543
AcsI RAATTY 6 cut(s) 9, 310, 571, 672, 691, 715
AcuI CTGAAG 1 cut(s) 555
AcyI GRCGYC 1 cut(s) 216
AfaI GTAC 1 cut(s) 117
AfiI CCNNNNNNNGG 2 cut(s) 178, 259
AflIII ACRYGT 1 cut(s) 513
AgeI ACCGGT 1 cut(s) 85
AgsI TTSAA 5 cut(s) 201, 308, 507, 571, 1043
AluBI AGCT 6 cut(s) 18, 478, 541, 771, 915, 1024
AluI AGCT 6 cut(s) 18, 478, 541, 771, 915, 1024
Alw26I GTCTC 3 cut(s) 21, 245, 410
AlwI GGATC 3 cut(s) 595, 608, 634
AoxI GGCC 4 cut(s) 169, 324, 543, 843
ApoI RAATTY 6 cut(s) 9, 310, 571, 672, 691, 715
AsiGI ACCGGT 1 cut(s) 85
AspLEI GCGC 2 cut(s) 218, 271
AspS9I GGNCC 4 cut(s) 262, 499, 740, 809
AsuHPI GGTGA 1 cut(s) 629
AsuII TTCGAA 1 cut(s) 608
AsuNHI GCTAGC 1 cut(s) 344
AvaII GGWCC 4 cut(s) 262, 499, 740, 809
BalI TGGCCA 2 cut(s) 326, 545
BamHI GGATCC 1 cut(s) 600
BanI GGYRCC 1 cut(s) 215
BarI GAAGNNNNNNTAC 2 cut(s) 870, 902
BbsI GAAGAC 1 cut(s) 185
BccI CCATC 1 cut(s) 389
BclI TGATCA 1 cut(s) 385
BcoDI GTCTC 3 cut(s) 21, 245, 410
BfaI CTAG 1 cut(s) 345
BfmI CTRYAG 1 cut(s) 235
BfoI RGCGCY 1 cut(s) 219
BglI GCCNNNNNGGC 1 cut(s) 555
Bme18I GGWCC 4 cut(s) 262, 499, 740, 809
BmgT120I GGNCC 4 cut(s) 262, 499, 740, 809
BmiI GGNNCC 2 cut(s) 217, 602
BmsI GCATC 1 cut(s) 693
BmtI GCTAGC 1 cut(s) 348
BpiI GAAGAC 1 cut(s) 185
BpmI CTGGAG 3 cut(s) 96, 543, 749
Bpu14I TTCGAA 1 cut(s) 608
BsaHI GRCGYC 1 cut(s) 216
BsaJI CCNNGG 7 cut(s) 127, 211, 296, 321, 447, 550, 977
BsaWI WCCGGW 1 cut(s) 85
Bsc4I CCNNNNNNNGG 2 cut(s) 178, 259
Bse118I RCCGGY 2 cut(s) 85, 853
Bse1I ACTGG 1 cut(s) 783
Bse3DI GCAATG 2 cut(s) 47, 991
BseDI CCNNGG 7 cut(s) 127, 211, 296, 321, 447, 550, 977
BseGI GGATG 1 cut(s) 317
BseLI CCNNNNNNNGG 2 cut(s) 178, 259
BseMI GCAATG 2 cut(s) 47, 991
BseMII CTCAG 4 cut(s) 297, 581, 718, 902
BseNI ACTGG 1 cut(s) 783
BseRI GAGGAG 1 cut(s) 428
BshFI GGCC 4 cut(s) 171, 326, 545, 845
BshNI GGYRCC 1 cut(s) 215
BshTI ACCGGT 1 cut(s) 85
BsiSI CCGG 2 cut(s) 86, 854
BslI CCNNNNNNNGG 2 cut(s) 178, 259
BsmAI GTCTC 3 cut(s) 21, 245, 410
BsmI GAATGC 1 cut(s) 153
BsnI GGCC 4 cut(s) 171, 326, 545, 845
Bsp119I TTCGAA 1 cut(s) 608
Bsp143I GATC 6 cut(s) 44, 385, 600, 612, 626, 775
Bsp19I CCATGG 3 cut(s) 211, 321, 977
BspACI CCGC 1 cut(s) 348
BspANI GGCC 4 cut(s) 171, 326, 545, 845
BspCNI CTCAG 4 cut(s) 296, 582, 717, 903
BspLI GGNNCC 2 cut(s) 217, 602
BspOI GCTAGC 1 cut(s) 348
BspPI GGATC 3 cut(s) 595, 608, 634
BspQI GCTCTTC 2 cut(s) 531, 816
BspT104I TTCGAA 1 cut(s) 608
BspT107I GGYRCC 1 cut(s) 215
BsrDI GCAATG 2 cut(s) 47, 991
BsrFI RCCGGY 2 cut(s) 85, 853
BsrI ACTGG 1 cut(s) 783
BssAI RCCGGY 2 cut(s) 85, 853
BssECI CCNNGG 7 cut(s) 127, 211, 296, 321, 447, 550, 977
BssMI GATC 6 cut(s) 44, 385, 600, 612, 626, 775
BssNI GRCGYC 1 cut(s) 216
BssT1I CCWWGG 6 cut(s) 127, 211, 296, 321, 447, 977
Bst4CI ACNGT 2 cut(s) 104, 899
Bst6I CTCTTC 2 cut(s) 531, 816
BstACI GRCGYC 1 cut(s) 216
BstBI TTCGAA 1 cut(s) 608
BstC8I GCNNGC 3 cut(s) 346, 543, 547
BstDEI CTNAG 5 cut(s) 188, 283, 590, 704, 911
BstDSI CCRYGG 3 cut(s) 211, 321, 977
BstF5I GGATG 1 cut(s) 317
BstH2I RGCGCY 1 cut(s) 219
BstHHI GCGC 2 cut(s) 218, 271
BstKTI GATC 6 cut(s) 47, 388, 603, 615, 629, 778
BstMAI GTCTC 3 cut(s) 21, 245, 410
BstMBI GATC 6 cut(s) 44, 385, 600, 612, 626, 775
BstMWI GCNNNNNNNGC 1 cut(s) 555
BstNSI RCATGY 1 cut(s) 517
BstSFI CTRYAG 1 cut(s) 235
BstV2I GAAGAC 1 cut(s) 185
BstX2I RGATCY 1 cut(s) 600
BstXI CCANNNNNNTGG 1 cut(s) 665
BstYI RGATCY 1 cut(s) 600
BsuRI GGCC 4 cut(s) 171, 326, 545, 845
BtgI CCRYGG 3 cut(s) 211, 321, 977
BtsCI GGATG 1 cut(s) 317
BtsIMutI CAGTG 1 cut(s) 379
Cac8I GCNNGC 3 cut(s) 346, 543, 547
CfoI GCGC 2 cut(s) 218, 271
Cfr10I RCCGGY 2 cut(s) 85, 853
Cfr13I GGNCC 4 cut(s) 262, 499, 740, 809
Csp6I GTAC 1 cut(s) 116
CspAI ACCGGT 1 cut(s) 85
CviAII CATG 6 cut(s) 212, 322, 424, 514, 847, 978
CviQI GTAC 1 cut(s) 116
DdeI CTNAG 5 cut(s) 188, 283, 590, 704, 911
DinI GGCGCC 1 cut(s) 217
DpnI GATC 6 cut(s) 46, 387, 602, 614, 628, 777
DpnII GATC 6 cut(s) 44, 385, 600, 612, 626, 775
EaeI YGGCCR 3 cut(s) 169, 324, 543
Eam1104I CTCTTC 2 cut(s) 531, 816
EarI CTCTTC 2 cut(s) 531, 816
Eco130I CCWWGG 6 cut(s) 127, 211, 296, 321, 447, 977
Eco47I GGWCC 4 cut(s) 262, 499, 740, 809
Eco57I CTGAAG 1 cut(s) 555
EcoT14I CCWWGG 6 cut(s) 127, 211, 296, 321, 447, 977
EcoT22I ATGCAT 1 cut(s) 991
EgeI GGCGCC 1 cut(s) 217
EheI GGCGCC 1 cut(s) 217
ErhI CCWWGG 6 cut(s) 127, 211, 296, 321, 447, 977
FaeI CATG 6 cut(s) 215, 325, 427, 517, 850, 981
FalI AAGNNNNNCTT 2 cut(s) 589, 621
FatI CATG 6 cut(s) 211, 321, 423, 513, 846, 977
FbaI TGATCA 1 cut(s) 385
FokI GGATG 1 cut(s) 304
FspBI CTAG 1 cut(s) 345
FspI TGCGCA 1 cut(s) 270
GlaI GCGC 2 cut(s) 217, 270
GsuI CTGGAG 3 cut(s) 96, 543, 749
HaeII RGCGCY 1 cut(s) 219
HaeIII GGCC 4 cut(s) 171, 326, 545, 845
HapII CCGG 2 cut(s) 86, 854
HhaI GCGC 2 cut(s) 218, 271
Hin1I GRCGYC 1 cut(s) 216
Hin1II CATG 6 cut(s) 215, 325, 427, 517, 850, 981
Hin6I GCGC 2 cut(s) 216, 269
HinP1I GCGC 2 cut(s) 216, 269
HindIII AAGCTT 2 cut(s) 476, 1022
HinfI GANTC 2 cut(s) 635, 745
HpaII CCGG 2 cut(s) 86, 854
HphI GGTGA 1 cut(s) 629
Hpy166II GTNNAC 2 cut(s) 655, 809
Hpy188I TCNGA 7 cut(s) 580, 591, 714, 735, 744, 750, 912
Hpy188III TCNNGA 7 cut(s) 75, 122, 224, 285, 497, 522, 766
Hpy8I GTNNAC 2 cut(s) 655, 809
HpyAV CCTTC 4 cut(s) 50, 591, 615, 872
HpyCH4III ACNGT 2 cut(s) 104, 899
HpyCH4IV ACGT 2 cut(s) 566, 1045
HpyCH4V TGCA 5 cut(s) 52, 831, 932, 989, 1034
HpyF10VI GCNNNNNNNGC 1 cut(s) 555
HpyF3I CTNAG 5 cut(s) 188, 283, 590, 704, 911
HpySE526I ACGT 2 cut(s) 566, 1045
Hsp92I GRCGYC 1 cut(s) 216
Hsp92II CATG 6 cut(s) 215, 325, 427, 517, 850, 981
HspAI GCGC 2 cut(s) 216, 269
KasI GGCGCC 1 cut(s) 215
Ksp22I TGATCA 1 cut(s) 385
Kzo9I GATC 6 cut(s) 44, 385, 600, 612, 626, 775
LguI GCTCTTC 2 cut(s) 531, 816
LmnI GCTCC 1 cut(s) 981
LweI GCATC 1 cut(s) 693
MaeI CTAG 1 cut(s) 345
MaeII ACGT 2 cut(s) 566, 1045
MaeIII GTNAC 2 cut(s) 442, 490
MalI GATC 6 cut(s) 46, 387, 602, 614, 628, 777
MboI GATC 6 cut(s) 44, 385, 600, 612, 626, 775
MboII GAAGA 6 cut(s) 185, 548, 578, 622, 833, 1030
MflI RGATCY 1 cut(s) 600
MlsI TGGCCA 2 cut(s) 326, 545
MluCI AATT 8 cut(s) 9, 80, 310, 571, 672, 691, 715, 998
MluNI TGGCCA 2 cut(s) 326, 545
Mly113I GGCGCC 1 cut(s) 216
MmeI TCCRAC 1 cut(s) 127
MnlI CCTC 5 cut(s) 343, 406, 560, 822, 835
Mox20I TGGCCA 2 cut(s) 326, 545
Mph1103I ATGCAT 1 cut(s) 991
MscI TGGCCA 2 cut(s) 326, 545
MseI TTAA 2 cut(s) 891, 1051
MslI CAYNNNNRTG 1 cut(s) 393
Msp20I TGGCCA 2 cut(s) 326, 545
MspI CCGG 2 cut(s) 86, 854
Mva1269I GAATGC 1 cut(s) 153
MwoI GCNNNNNNNGC 1 cut(s) 555
NarI GGCGCC 1 cut(s) 216
NcoI CCATGG 3 cut(s) 211, 321, 977
NdeII GATC 6 cut(s) 44, 385, 600, 612, 626, 775
NheI GCTAGC 1 cut(s) 344
NlaIII CATG 6 cut(s) 215, 325, 427, 517, 850, 981
NlaIV GGNNCC 2 cut(s) 217, 602
NmuCI GTSAC 1 cut(s) 442
NsbI TGCGCA 1 cut(s) 270
NsiI ATGCAT 1 cut(s) 991
NspI RCATGY 1 cut(s) 517
NspV TTCGAA 1 cut(s) 608
PciI ACATGT 1 cut(s) 513
PciSI GCTCTTC 2 cut(s) 531, 816
PctI GAATGC 1 cut(s) 153
PfeI GAWTC 2 cut(s) 635, 745
PflMI CCANNNNNTGG 2 cut(s) 178, 259
PinAI ACCGGT 1 cut(s) 85
PluTI GGCGCC 1 cut(s) 219
PscI ACATGT 1 cut(s) 513
Psp1406I AACGTT 2 cut(s) 566, 1045
PspN4I GGNNCC 2 cut(s) 217, 602
PspPI GGNCC 4 cut(s) 262, 499, 740, 809
PsuI RGATCY 1 cut(s) 600
RsaI GTAC 1 cut(s) 117
RsaNI GTAC 1 cut(s) 116
RseI CAYNNNNRTG 1 cut(s) 393
SapI GCTCTTC 2 cut(s) 531, 816
SaqAI TTAA 2 cut(s) 891, 1051
Sau3AI GATC 6 cut(s) 44, 385, 600, 612, 626, 775
Sau96I GGNCC 4 cut(s) 262, 499, 740, 809
SfaNI GCATC 1 cut(s) 693
SfcI CTRYAG 1 cut(s) 235
SfoI GGCGCC 1 cut(s) 217
SfuI TTCGAA 1 cut(s) 608
SinI GGWCC 4 cut(s) 262, 499, 740, 809
SmiMI CAYNNNNRTG 1 cut(s) 393
Sse9I AATT 8 cut(s) 9, 80, 310, 571, 672, 691, 715, 998
SsiI CCGC 1 cut(s) 348
SspDI GGCGCC 1 cut(s) 215
SspMI CTAG 1 cut(s) 345
StyI CCWWGG 6 cut(s) 127, 211, 296, 321, 447, 977
TaaI ACNGT 2 cut(s) 104, 899
TaiI ACGT 2 cut(s) 569, 1048
TaqI TCGA 2 cut(s) 43, 608
TasI AATT 8 cut(s) 9, 80, 310, 571, 672, 691, 715, 998
TfiI GAWTC 2 cut(s) 635, 745
Tru1I TTAA 2 cut(s) 891, 1051
Tru9I TTAA 2 cut(s) 891, 1051
TscAI CASTG 1 cut(s) 379
TseFI GTSAC 1 cut(s) 442
Tsp45I GTSAC 1 cut(s) 442
TspDTI ATGAA 3 cut(s) 185, 243, 948
TspGWI ACGGA 1 cut(s) 888
TspRI CASTG 1 cut(s) 379
Van91I CCANNNNNTGG 2 cut(s) 178, 259
VpaK11BI GGWCC 4 cut(s) 262, 499, 740, 809
XapI RAATTY 6 cut(s) 9, 310, 571, 672, 691, 715
XceI RCATGY 1 cut(s) 517
XspI CTAG 1 cut(s) 345
Zsp2I ATGCAT 1 cut(s) 991
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.