RchiOBHm_Chr1g0373251

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
61587788 .. 61588153
366 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59715

Sequence Viewer

Length: 366 bp
ATGACCAAAATGACATTTCTGAGTCGCTTGAACTTGTCATACAACAATTTGACGGGACGGATTCCAGAAAGCACTCAACTTCAGAGCCTTGATCAATCCAGCTTTGTTGGCAATGAACTTTGTGGTCCTCCACTCATCAAGAATTGCAGTGCAAGGAAGGTGACACCACCAACAGTTGAGCAACAGAGAGGATATGATTTACTTGACGACAAGTGGTTCTACCTGAGCTTGGGATTGGGATTCGCGGTTGGTTTTTGGAGTATACTTGGCTCCTTGCTCATTAACATGCCATGGAGCTTTGCTTTTTCGCAATTCCTCGATAGCATTGTGCTTAAAATTTATGCTTTAATTGTTGAGTATGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

121

Amino Acids

13.68

Weight (kDa)

6.14

Isoelectric Point (pI)

38.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 262
AccII CGCG 1 cut(s) 245
AciI CCGC 1 cut(s) 245
AcsI RAATTY 1 cut(s) 336
AcuI CTGAAG 1 cut(s) 65
AfiI CCNNNNNNNGG 1 cut(s) 229
AgsI TTSAA 1 cut(s) 31
AluBI AGCT 3 cut(s) 102, 228, 297
AluI AGCT 3 cut(s) 102, 228, 297
ApoI RAATTY 1 cut(s) 336
AspS9I GGNCC 1 cut(s) 125
AsuHPI GGTGA 1 cut(s) 172
AvaII GGWCC 1 cut(s) 125
BclI TGATCA 1 cut(s) 91
Bme18I GGWCC 1 cut(s) 125
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 1 cut(s) 271
Bpu10I CCTNAGC 1 cut(s) 224
BsaJI CCNNGG 1 cut(s) 290
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse3DI GCAATG 1 cut(s) 118
BseDI CCNNGG 1 cut(s) 290
BseLI CCNNNNNNNGG 1 cut(s) 229
BseMI GCAATG 1 cut(s) 118
BseMII CTCAG 2 cut(s) 11, 215
Bsh1236I CGCG 1 cut(s) 245
BslFI GGGAC 1 cut(s) 69
BslI CCNNNNNNNGG 1 cut(s) 229
BsmFI GGGAC 1 cut(s) 69
Bsp143I GATC 1 cut(s) 91
Bsp19I CCATGG 1 cut(s) 290
BspACI CCGC 1 cut(s) 245
BspCNI CTCAG 2 cut(s) 12, 216
BspFNI CGCG 1 cut(s) 245
BspLI GGNNCC 1 cut(s) 271
BsrDI GCAATG 1 cut(s) 118
BssECI CCNNGG 1 cut(s) 290
BssMI GATC 1 cut(s) 91
BssNAI GTATAC 1 cut(s) 263
BssT1I CCWWGG 1 cut(s) 290
Bst1107I GTATAC 1 cut(s) 263
Bst4CI ACNGT 1 cut(s) 175
BstDEI CTNAG 2 cut(s) 20, 224
BstDSI CCRYGG 1 cut(s) 290
BstFNI CGCG 1 cut(s) 245
BstKTI GATC 1 cut(s) 94
BstMBI GATC 1 cut(s) 91
BstMWI GCNNNNNNNGC 1 cut(s) 108
BstNSI RCATGY 1 cut(s) 289
BstUI CGCG 1 cut(s) 245
BstZ17I GTATAC 1 cut(s) 263
BtgI CCRYGG 1 cut(s) 290
BtsI GCAGTG 1 cut(s) 154
BtsIMutI CAGTG 1 cut(s) 154
Cfr13I GGNCC 1 cut(s) 125
CviAII CATG 2 cut(s) 286, 291
CviJI RGCY 5 cut(s) 87, 102, 228, 270, 297
CviKI_1 RGCY 5 cut(s) 87, 102, 228, 270, 297
DdeI CTNAG 2 cut(s) 20, 224
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
Eco130I CCWWGG 1 cut(s) 290
Eco47I GGWCC 1 cut(s) 125
Eco57I CTGAAG 1 cut(s) 65
EcoT14I CCWWGG 1 cut(s) 290
ErhI CCWWGG 1 cut(s) 290
FaeI CATG 2 cut(s) 289, 294
FaiI YATR 7 cut(s) 40, 195, 263, 287, 292, 342, 360
FaqI GGGAC 1 cut(s) 69
FatI CATG 2 cut(s) 285, 290
FbaI TGATCA 1 cut(s) 91
FblI GTMKAC 1 cut(s) 262
Hin1II CATG 2 cut(s) 289, 294
HinfI GANTC 3 cut(s) 22, 61, 240
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 1 cut(s) 263
Hpy188I TCNGA 2 cut(s) 21, 84
Hpy188III TCNNGA 2 cut(s) 65, 139
Hpy8I GTNNAC 1 cut(s) 263
HpyAV CCTTC 1 cut(s) 151
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4V TGCA 2 cut(s) 147, 152
HpyF10VI GCNNNNNNNGC 1 cut(s) 108
HpyF3I CTNAG 2 cut(s) 20, 224
Hsp92II CATG 2 cut(s) 289, 294
Ksp22I TGATCA 1 cut(s) 91
Kzo9I GATC 1 cut(s) 91
LmnI GCTCC 2 cut(s) 275, 294
LpnPI CCDG 3 cut(s) 78, 112, 236
MaeIII GTNAC 1 cut(s) 160
MalI GATC 1 cut(s) 93
MboI GATC 1 cut(s) 91
MluCI AATT 5 cut(s) 46, 142, 311, 336, 348
MlyI GAGTC 1 cut(s) 31
MnlI CCTC 3 cut(s) 138, 182, 326
MseI TTAA 3 cut(s) 282, 333, 347
MslI CAYNNNNRTG 1 cut(s) 284
MvnI CGCG 1 cut(s) 245
MwoI GCNNNNNNNGC 1 cut(s) 108
NcoI CCATGG 1 cut(s) 290
NdeII GATC 1 cut(s) 91
NlaIII CATG 2 cut(s) 289, 294
NlaIV GGNNCC 1 cut(s) 271
NmuCI GTSAC 1 cut(s) 160
NspI RCATGY 1 cut(s) 289
PfeI GAWTC 2 cut(s) 61, 240
PleI GAGTC 1 cut(s) 30
PpsI GAGTC 1 cut(s) 30
PspN4I GGNNCC 1 cut(s) 271
PspPI GGNCC 1 cut(s) 125
PsrI GAACNNNNNNTAC 2 cut(s) 23, 55
RseI CAYNNNNRTG 1 cut(s) 284
SaqAI TTAA 3 cut(s) 282, 333, 347
Sau3AI GATC 1 cut(s) 91
Sau96I GGNCC 1 cut(s) 125
SchI GAGTC 1 cut(s) 31
SetI ASST 5 cut(s) 104, 162, 225, 230, 299
SinI GGWCC 1 cut(s) 125
SmiMI CAYNNNNRTG 1 cut(s) 284
Sse9I AATT 5 cut(s) 46, 142, 311, 336, 348
SsiI CCGC 1 cut(s) 245
StyI CCWWGG 1 cut(s) 290
TaaI ACNGT 1 cut(s) 175
TaqI TCGA 1 cut(s) 318
TasI AATT 5 cut(s) 46, 142, 311, 336, 348
TfiI GAWTC 2 cut(s) 61, 240
Tru1I TTAA 3 cut(s) 282, 333, 347
Tru9I TTAA 3 cut(s) 282, 333, 347
TscAI CASTG 1 cut(s) 154
TseFI GTSAC 1 cut(s) 160
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 1 cut(s) 129
TspGWI ACGGA 1 cut(s) 73
TspRI CASTG 1 cut(s) 154
VpaK11BI GGWCC 1 cut(s) 125
XapI RAATTY 1 cut(s) 336
XceI RCATGY 1 cut(s) 289
XmiI GTMKAC 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.