MD15G1429700.v1.1

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000281
Physical Location & Seq
Forward (+)
53007284 .. 53007823
540 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1429700.v1.1.491

Sequence Viewer

Length: 540 bp
ATGGTGAGAGTCATGATACTTGTTTCCATACTCGGCTTTCTTCTATCCATTGCGTCTTTTACACTCGGTTTATGCAATGGAAACCTGAATGTACCTTGCATAGAAAGTGAGAGACAAACACTTCTTATGTTCAAGAAAGATATTGATGATCCGTGGAATCTGCTTTCCTCTTGGGCTTGTGAAGGCGATTGTTGCAACTGGACCGGTGTTGTTTGCGACAATTTAACCGATCACGTCCATGAGCTCCACCTTGCTGGTTATTCTGATCAAAAGCTTGGTGGTAAGGTAAATCCTTTTCTACTCAATTTAAAGCATCTTAGCCACTTGGACTTAAGTCGCAATAATTTCAAAGGACTGCAGATTCCTAGCTTTTTAGGTTCTCTTAGAGGTTTAAGATATCTTGATCCCTCAGATGCAGGGTTCAACGGAACCATTCCTCATCAGTTGGGAAATCTCTCAAGTCTACGTTATCTCGACCTTTCTTACAACGTAGTTCGATGGTCGAGAATCTCGAATGGCTCTCCGGACTTTCTCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

180

Amino Acids

19.97

Weight (kDa)

6.27

Isoelectric Point (pI)

27.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 35 - 73 3.9e-11 Leucine rich repeat N-terminal domain
LRR_8 PF13855 105 - 163 1.3e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 463
AccIII TCCGGA 1 cut(s) 523
AclWI GGATC 2 cut(s) 143, 398
AfaI GTAC 1 cut(s) 93
AflII CTTAAG 1 cut(s) 331
AgeI ACCGGT 1 cut(s) 203
AgsI TTSAA 3 cut(s) 133, 349, 424
AjiI CACGTC 1 cut(s) 235
AluBI AGCT 3 cut(s) 244, 274, 369
AluI AGCT 3 cut(s) 244, 274, 369
Alw21I GWGCWC 1 cut(s) 246
Alw26I GTCTC 1 cut(s) 106
AlwI GGATC 2 cut(s) 143, 398
Aor13HI TCCGGA 1 cut(s) 523
AsiGI ACCGGT 1 cut(s) 203
AspS9I GGNCC 1 cut(s) 201
AsuHPI GGTGA 1 cut(s) 16
AvaII GGWCC 1 cut(s) 201
BanII GRGCYC 1 cut(s) 246
Bbv12I GWGCWC 1 cut(s) 246
BccI CCATC 1 cut(s) 492
BclI TGATCA 1 cut(s) 265
BcoDI GTCTC 1 cut(s) 106
BfaI CTAG 1 cut(s) 366
BfmI CTRYAG 1 cut(s) 356
BfrI CTTAAG 1 cut(s) 331
Bme18I GGWCC 1 cut(s) 201
BmgBI CACGTC 1 cut(s) 235
BmgT120I GGNCC 1 cut(s) 201
BmiI GGNNCC 1 cut(s) 430
BmsI GCATC 2 cut(s) 322, 403
BoxI GACNNNNGTC 1 cut(s) 333
BpuEI CTTGAG 1 cut(s) 442
BsaJI CCNNGG 1 cut(s) 152
BsaWI WCCGGW 2 cut(s) 203, 523
Bse118I RCCGGY 1 cut(s) 203
Bse1I ACTGG 1 cut(s) 203
Bse3DI GCAATG 2 cut(s) 48, 82
BseAI TCCGGA 1 cut(s) 523
BseDI CCNNGG 1 cut(s) 152
BseMI GCAATG 2 cut(s) 48, 82
BseMII CTCAG 1 cut(s) 423
BseNI ACTGG 1 cut(s) 203
BshTI ACCGGT 1 cut(s) 203
BsiHKAI GWGCWC 1 cut(s) 246
BsiSI CCGG 2 cut(s) 204, 524
BsmAI GTCTC 1 cut(s) 106
Bsp1286I GDGCHC 1 cut(s) 246
Bsp13I TCCGGA 1 cut(s) 523
Bsp143I GATC 4 cut(s) 148, 229, 265, 403
BspCNI CTCAG 1 cut(s) 422
BspEI TCCGGA 1 cut(s) 523
BspHI TCATGA 1 cut(s) 12
BspLI GGNNCC 1 cut(s) 430
BspMAI CTGCAG 1 cut(s) 360
BspPI GGATC 2 cut(s) 143, 398
BspTI CTTAAG 1 cut(s) 331
BsrDI GCAATG 2 cut(s) 48, 82
BsrFI RCCGGY 1 cut(s) 203
BsrI ACTGG 1 cut(s) 203
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 1 cut(s) 152
BssMI GATC 4 cut(s) 148, 229, 265, 403
BstAFI CTTAAG 1 cut(s) 331
BstDEI CTNAG 3 cut(s) 317, 383, 409
BstDSI CCRYGG 1 cut(s) 152
BstKTI GATC 4 cut(s) 151, 232, 268, 406
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 4 cut(s) 148, 229, 265, 403
BstMWI GCNNNNNNNGC 1 cut(s) 192
BstPAI GACNNNNGTC 1 cut(s) 333
BstSFI CTRYAG 1 cut(s) 356
BstXI CCANNNNNNTGG 1 cut(s) 254
BtgI CCRYGG 1 cut(s) 152
BtrI CACGTC 1 cut(s) 235
CciI TCATGA 1 cut(s) 12
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 1 cut(s) 201
CseI GACGC 1 cut(s) 42
Csp6I GTAC 1 cut(s) 92
CspAI ACCGGT 1 cut(s) 203
CviAII CATG 2 cut(s) 13, 239
CviJI RGCY 7 cut(s) 36, 176, 244, 274, 321, 369, 519
CviKI_1 RGCY 7 cut(s) 36, 176, 244, 274, 321, 369, 519
CviQI GTAC 1 cut(s) 92
DdeI CTNAG 3 cut(s) 317, 383, 409
DpnI GATC 4 cut(s) 150, 231, 267, 405
DpnII GATC 4 cut(s) 148, 229, 265, 403
DraI TTTAAA 1 cut(s) 309
Ecl136II GAGCTC 1 cut(s) 244
Eco24I GRGCYC 1 cut(s) 246
Eco32I GATATC 1 cut(s) 398
Eco47I GGWCC 1 cut(s) 201
Eco53kI GAGCTC 1 cut(s) 244
EcoICRI GAGCTC 1 cut(s) 244
EcoRV GATATC 1 cut(s) 398
EcoT38I GRGCYC 1 cut(s) 246
FaeI CATG 2 cut(s) 16, 242
FaiI YATR 6 cut(s) 14, 29, 73, 101, 128, 240
FatI CATG 2 cut(s) 12, 238
FbaI TGATCA 1 cut(s) 265
FblI GTMKAC 1 cut(s) 463
FriOI GRGCYC 1 cut(s) 246
FspBI CTAG 1 cut(s) 366
HapII CCGG 2 cut(s) 204, 524
HgaI GACGC 1 cut(s) 42
Hin1II CATG 2 cut(s) 16, 242
HindIII AAGCTT 1 cut(s) 272
HinfI GANTC 4 cut(s) 9, 157, 361, 507
HpaII CCGG 2 cut(s) 204, 524
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 464
Hpy188I TCNGA 2 cut(s) 265, 412
Hpy188III TCNNGA 7 cut(s) 13, 133, 401, 473, 504, 511, 524
Hpy8I GTNNAC 1 cut(s) 464
HpyAV CCTTC 1 cut(s) 176
HpyCH4IV ACGT 3 cut(s) 234, 466, 489
HpyCH4V TGCA 5 cut(s) 75, 99, 195, 358, 416
HpyF10VI GCNNNNNNNGC 1 cut(s) 192
HpyF3I CTNAG 3 cut(s) 317, 383, 409
HpySE526I ACGT 3 cut(s) 234, 466, 489
Hsp92II CATG 2 cut(s) 16, 242
Kpn2I TCCGGA 1 cut(s) 523
Ksp22I TGATCA 1 cut(s) 265
Kzo9I GATC 4 cut(s) 148, 229, 265, 403
LmnI GCTCC 1 cut(s) 249
LpnPI CCDG 5 cut(s) 98, 184, 217, 240, 402
LweI GCATC 2 cut(s) 322, 403
MaeI CTAG 1 cut(s) 366
MaeII ACGT 3 cut(s) 234, 466, 489
MalI GATC 4 cut(s) 150, 231, 267, 405
MboI GATC 4 cut(s) 148, 229, 265, 403
MboII GAAGA 1 cut(s) 32
MhlI GDGCHC 1 cut(s) 246
MluCI AATT 3 cut(s) 220, 304, 343
MlyI GAGTC 1 cut(s) 18
MnlI CCTC 4 cut(s) 178, 380, 418, 447
MroI TCCGGA 1 cut(s) 523
MseI TTAA 4 cut(s) 224, 308, 332, 392
MslI CAYNNNNRTG 1 cut(s) 237
MspCI CTTAAG 1 cut(s) 331
MspI CCGG 2 cut(s) 204, 524
MwoI GCNNNNNNNGC 1 cut(s) 192
NdeII GATC 4 cut(s) 148, 229, 265, 403
NlaIII CATG 2 cut(s) 16, 242
NlaIV GGNNCC 1 cut(s) 430
NmeAIII GCCGAG 1 cut(s) 12
PagI TCATGA 1 cut(s) 12
PcsI WCGNNNNNNNCGW 1 cut(s) 509
PfeI GAWTC 3 cut(s) 157, 361, 507
PinAI ACCGGT 1 cut(s) 203
PleI GAGTC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 17
PshAI GACNNNNGTC 1 cut(s) 333
Psp124BI GAGCTC 1 cut(s) 246
PspN4I GGNNCC 1 cut(s) 430
PspPI GGNCC 1 cut(s) 201
PstI CTGCAG 1 cut(s) 360
RsaI GTAC 1 cut(s) 93
RsaNI GTAC 1 cut(s) 92
RseI CAYNNNNRTG 1 cut(s) 237
SacI GAGCTC 1 cut(s) 246
SaqAI TTAA 4 cut(s) 224, 308, 332, 392
Sau3AI GATC 4 cut(s) 148, 229, 265, 403
Sau96I GGNCC 1 cut(s) 201
SchI GAGTC 1 cut(s) 18
SduI GDGCHC 1 cut(s) 246
SfaNI GCATC 2 cut(s) 322, 403
SfcI CTRYAG 1 cut(s) 356
SinI GGWCC 1 cut(s) 201
SmiMI CAYNNNNRTG 1 cut(s) 237
SmlI CTYRAG 2 cut(s) 331, 457
SmoI CTYRAG 2 cut(s) 331, 457
Sse9I AATT 3 cut(s) 220, 304, 343
SspMI CTAG 1 cut(s) 366
SstI GAGCTC 1 cut(s) 246
TaiI ACGT 3 cut(s) 237, 469, 492
TaqI TCGA 4 cut(s) 474, 496, 503, 512
TasI AATT 3 cut(s) 220, 304, 343
TfiI GAWTC 3 cut(s) 157, 361, 507
Tru1I TTAA 4 cut(s) 224, 308, 332, 392
Tru9I TTAA 4 cut(s) 224, 308, 332, 392
TspGWI ACGGA 2 cut(s) 141, 441
Vha464I CTTAAG 1 cut(s) 331
VpaK11BI GGWCC 1 cut(s) 201
XmiI GTMKAC 1 cut(s) 463
XspI CTAG 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.