Rroxscaffold_4G00284310

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000281
Physical Location & Seq
Reverse (-)
5943389 .. 5944515
1127 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00284310.1

Sequence Viewer

Length: 828 bp
ATGAATCTCTCACACAATCAATTGTATGGGGAGATTCAAAATATAGTTGCTGCAGAAGGGTCAATAGTTGAACTTGGTTCTAACCAGTTCAATGGTTCATTACCCCTTGTCTCCTCGGCGATAGATTTACTAGATCTCTCCAATTCATCCTTTTCCGGTTCTGTCTTCCATTTCTTTTGTGATAAGATCAATATACCAAAGCGGGTTTCATATCTCGTATCTCGGAAACAATCTTCTCGGTGGAAACATTCCCGATTGTTGGATGAATTGGGGACTTTTGCAAGTGCTGAATTTAGAGAACAACAATTTAACCGGAAACATTTGAGCTCCATGGAGTCCTTAAACCTCCCGCAATCATTGCACTTGCGTAATAATGGTCTATACGGAGAGTTACCTCCATCCCCGATGTATTCCATGAATATGAGGGTTCTTGACATTGGTGAAAATAAGTTTGTGGGAAGGTTACCAGCAGCAATGATAGAAAATGGCTATTCAAGTTTGTTGGTTCTTAACCTTCGTTCCAATAAGCTTCAAGGAGGCATTCCCGATGAACTCTGTGCTCTCGGTAATCTCCGGATCTTGGACCTTGCGATAACAATCTCTCGGGTACAATACCAAGGTGCATCAAGAATTTCGGTGCCATGGCCAGATTGCCAAGATCGGATGCATGACAAGTATGACATTTACGAGTCGCTTGAACTTGTCCTACAACAATCTAGCGGGATGGATTCTGAAAGCACTCGGCTCCGAGCCTTGATCGGTCCGGCTTTGTTGGCAATGAACTTTGCGGAGCTCCACTCATCAAGAATTGTAGTGCAAGCAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

275

Amino Acids

30.77

Weight (kDa)

6.66

Isoelectric Point (pI)

52.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 637
AccIII TCCGGA 1 cut(s) 573
AciI CCGC 4 cut(s) 202, 350, 720, 788
AclWI GGATC 1 cut(s) 584
AcoI YGGCCR 1 cut(s) 644
AcsI RAATTY 2 cut(s) 290, 630
AfaI GTAC 1 cut(s) 609
AfiI CCNNNNNNNGG 2 cut(s) 259, 580
AgsI TTSAA 6 cut(s) 38, 71, 91, 495, 533, 698
AjuI GAANNNNNNNTTGG 2 cut(s) 190, 222
AluBI AGCT 3 cut(s) 327, 529, 793
AluI AGCT 3 cut(s) 327, 529, 793
Alw21I GWGCWC 3 cut(s) 329, 562, 795
Alw26I GTCTC 1 cut(s) 115
AlwI GGATC 1 cut(s) 584
Ama87I CYCGRG 1 cut(s) 603
Aor13HI TCCGGA 1 cut(s) 573
AoxI GGCC 1 cut(s) 644
ApeKI GCWGC 2 cut(s) 50, 470
ApoI RAATTY 2 cut(s) 290, 630
AspS9I GGNCC 2 cut(s) 583, 761
AsuHPI GGTGA 1 cut(s) 452
AvaI CYCGRG 1 cut(s) 603
AvaII GGWCC 2 cut(s) 583, 761
BalI TGGCCA 1 cut(s) 646
BanI GGYRCC 1 cut(s) 637
BanII GRGCYC 2 cut(s) 329, 795
BbsI GAAGAC 1 cut(s) 157
Bbv12I GWGCWC 3 cut(s) 329, 562, 795
BbvI GCAGC 2 cut(s) 37, 482
BccI CCATC 2 cut(s) 406, 718
BcoDI GTCTC 1 cut(s) 115
BfaI CTAG 2 cut(s) 131, 717
BfmI CTRYAG 1 cut(s) 51
BglII AGATCT 1 cut(s) 133
BisI GCNGC 2 cut(s) 51, 471
BlsI GCNGC 2 cut(s) 52, 472
Bme18I GGWCC 2 cut(s) 583, 761
BmeT110I CYCGRG 1 cut(s) 603
BmgT120I GGNCC 2 cut(s) 583, 761
BmiI GGNNCC 2 cut(s) 639, 746
BmsI GCATC 2 cut(s) 632, 654
BpiI GAAGAC 1 cut(s) 157
BplI GAGNNNNNCTC 2 cut(s) 782, 814
BsaBI GATNNNNATC 1 cut(s) 596
BsaJI CCNNGG 4 cut(s) 114, 330, 616, 641
BsaWI WCCGGW 3 cut(s) 155, 312, 573
Bsc4I CCNNNNNNNGG 2 cut(s) 259, 580
Bse1I ACTGG 1 cut(s) 85
Bse3DI GCAATG 3 cut(s) 356, 480, 783
Bse8I GATNNNNATC 1 cut(s) 596
BseAI TCCGGA 1 cut(s) 573
BseDI CCNNGG 4 cut(s) 114, 330, 616, 641
BseGI GGATG 5 cut(s) 146, 268, 398, 669, 729
BseJI GATNNNNATC 1 cut(s) 596
BseLI CCNNNNNNNGG 2 cut(s) 259, 580
BseMI GCAATG 3 cut(s) 356, 480, 783
BseNI ACTGG 1 cut(s) 85
BseRI GAGGAG 1 cut(s) 103
BseXI GCAGC 2 cut(s) 37, 482
BshFI GGCC 1 cut(s) 646
BshNI GGYRCC 1 cut(s) 637
BsiHKAI GWGCWC 3 cut(s) 329, 562, 795
BsiHKCI CYCGRG 1 cut(s) 603
BsiSI CCGG 4 cut(s) 156, 313, 574, 764
BslFI GGGAC 1 cut(s) 286
BslI CCNNNNNNNGG 2 cut(s) 259, 580
BsmAI GTCTC 1 cut(s) 115
BsmFI GGGAC 1 cut(s) 286
BsmI GAATGC 1 cut(s) 540
BsnI GGCC 1 cut(s) 646
BsoBI CYCGRG 1 cut(s) 603
Bsp1286I GDGCHC 3 cut(s) 329, 562, 795
Bsp13I TCCGGA 1 cut(s) 573
Bsp143I GATC 5 cut(s) 133, 186, 576, 658, 756
Bsp19I CCATGG 2 cut(s) 330, 641
BspACI CCGC 4 cut(s) 202, 350, 720, 788
BspANI GGCC 1 cut(s) 646
BspEI TCCGGA 1 cut(s) 573
BspLI GGNNCC 2 cut(s) 639, 746
BspMAI CTGCAG 1 cut(s) 55
BspPI GGATC 1 cut(s) 584
BspT107I GGYRCC 1 cut(s) 637
BsrDI GCAATG 3 cut(s) 356, 480, 783
BsrI ACTGG 1 cut(s) 85
BssECI CCNNGG 4 cut(s) 114, 330, 616, 641
BssMI GATC 5 cut(s) 133, 186, 576, 658, 756
BssT1I CCWWGG 3 cut(s) 330, 616, 641
BstAPI GCANNNNNTGC 1 cut(s) 358
BstC8I GCNNGC 1 cut(s) 819
BstDSI CCRYGG 2 cut(s) 330, 641
BstEII GGTNACC 1 cut(s) 462
BstF5I GGATG 5 cut(s) 146, 268, 398, 669, 729
BstKTI GATC 5 cut(s) 136, 189, 579, 661, 759
BstMAI GTCTC 1 cut(s) 115
BstMBI GATC 5 cut(s) 133, 186, 576, 658, 756
BstMWI GCNNNNNNNGC 2 cut(s) 358, 773
BstPI GGTNACC 1 cut(s) 462
BstSFI CTRYAG 1 cut(s) 51
BstV1I GCAGC 2 cut(s) 37, 482
BstV2I GAAGAC 1 cut(s) 157
BstX2I RGATCY 2 cut(s) 133, 576
BstXI CCANNNNNNTGG 1 cut(s) 92
BstYI RGATCY 2 cut(s) 133, 576
BsuRI GGCC 1 cut(s) 646
BtgI CCRYGG 2 cut(s) 330, 641
BtsCI GGATG 5 cut(s) 146, 268, 398, 669, 729
Cac8I GCNNGC 1 cut(s) 819
Cfr13I GGNCC 2 cut(s) 583, 761
CpoI CGGWCCG 1 cut(s) 761
Csp6I GTAC 1 cut(s) 608
CspI CGGWCCG 1 cut(s) 761
CviAII CATG 4 cut(s) 331, 415, 642, 668
CviJI RGCY 8 cut(s) 327, 489, 529, 646, 745, 752, 767, 793
CviKI_1 RGCY 8 cut(s) 327, 489, 529, 646, 745, 752, 767, 793
CviQI GTAC 1 cut(s) 608
DpnI GATC 5 cut(s) 135, 188, 578, 660, 758
DpnII GATC 5 cut(s) 133, 186, 576, 658, 756
EaeI YGGCCR 1 cut(s) 644
Ecl136II GAGCTC 2 cut(s) 327, 793
Eco130I CCWWGG 3 cut(s) 330, 616, 641
Eco24I GRGCYC 2 cut(s) 329, 795
Eco47I GGWCC 2 cut(s) 583, 761
Eco53kI GAGCTC 2 cut(s) 327, 793
Eco88I CYCGRG 1 cut(s) 603
Eco91I GGTNACC 1 cut(s) 462
EcoICRI GAGCTC 2 cut(s) 327, 793
EcoO65I GGTNACC 1 cut(s) 462
EcoT14I CCWWGG 3 cut(s) 330, 616, 641
EcoT22I ATGCAT 1 cut(s) 669
EcoT38I GRGCYC 2 cut(s) 329, 795
ErhI CCWWGG 3 cut(s) 330, 616, 641
FaeI CATG 4 cut(s) 334, 418, 645, 671
FaqI GGGAC 1 cut(s) 286
FatI CATG 4 cut(s) 330, 414, 641, 667
FauI CCCGC 3 cut(s) 195, 357, 713
Fnu4HI GCNGC 2 cut(s) 51, 471
FokI GGATG 5 cut(s) 133, 275, 385, 676, 736
FriOI GRGCYC 2 cut(s) 329, 795
Fsp4HI GCNGC 2 cut(s) 51, 471
FspBI CTAG 2 cut(s) 131, 717
GluI GCNGC 2 cut(s) 51, 471
HaeIII GGCC 1 cut(s) 646
HapII CCGG 4 cut(s) 156, 313, 574, 764
Hin1II CATG 4 cut(s) 334, 418, 645, 671
HindIII AAGCTT 1 cut(s) 527
HinfI GANTC 5 cut(s) 4, 34, 335, 689, 728
HpaII CCGG 4 cut(s) 156, 313, 574, 764
HphI GGTGA 1 cut(s) 452
Hpy188I TCNGA 4 cut(s) 225, 663, 733, 749
Hpy188III TCNNGA 6 cut(s) 252, 431, 545, 574, 627, 804
HpyAV CCTTC 3 cut(s) 50, 453, 524
HpyCH4V TGCA 6 cut(s) 53, 281, 361, 623, 667, 817
HpyF10VI GCNNNNNNNGC 2 cut(s) 358, 773
Hsp92II CATG 4 cut(s) 334, 418, 645, 671
Kpn2I TCCGGA 1 cut(s) 573
Kzo9I GATC 5 cut(s) 133, 186, 576, 658, 756
LmnI GCTCC 4 cut(s) 332, 750, 790, 798
LpnPI CCDG 7 cut(s) 98, 169, 326, 480, 587, 660, 777
Lsp1109I GCAGC 2 cut(s) 37, 482
LweI GCATC 2 cut(s) 632, 654
MaeI CTAG 2 cut(s) 131, 717
MaeIII GTNAC 2 cut(s) 390, 462
MalI GATC 5 cut(s) 135, 188, 578, 660, 758
MboI GATC 5 cut(s) 133, 186, 576, 658, 756
MboII GAAGA 2 cut(s) 157, 225
MfeI CAATTG 1 cut(s) 20
MflI RGATCY 2 cut(s) 133, 576
MhlI GDGCHC 3 cut(s) 329, 562, 795
MlsI TGGCCA 1 cut(s) 646
MluCI AATT 7 cut(s) 20, 142, 266, 290, 305, 630, 807
MluNI TGGCCA 1 cut(s) 646
MlyI GAGTC 2 cut(s) 344, 698
MmeI TCCRAC 1 cut(s) 240
MnlI CCTC 5 cut(s) 124, 356, 405, 417, 530
Mox20I TGGCCA 1 cut(s) 646
Mph1103I ATGCAT 1 cut(s) 669
MroI TCCGGA 1 cut(s) 573
MscI TGGCCA 1 cut(s) 646
MseI TTAA 3 cut(s) 309, 341, 510
MslI CAYNNNNRTG 1 cut(s) 419
Msp20I TGGCCA 1 cut(s) 646
MspI CCGG 4 cut(s) 156, 313, 574, 764
MunI CAATTG 1 cut(s) 20
Mva1269I GAATGC 1 cut(s) 540
MwoI GCNNNNNNNGC 2 cut(s) 358, 773
NcoI CCATGG 2 cut(s) 330, 641
NdeII GATC 5 cut(s) 133, 186, 576, 658, 756
NlaIII CATG 4 cut(s) 334, 418, 645, 671
NlaIV GGNNCC 2 cut(s) 639, 746
NmeAIII GCCGAG 2 cut(s) 95, 721
NsiI ATGCAT 1 cut(s) 669
PctI GAATGC 1 cut(s) 540
PfeI GAWTC 3 cut(s) 4, 34, 728
PkrI GCNGC 2 cut(s) 52, 472
PleI GAGTC 2 cut(s) 343, 697
PpsI GAGTC 2 cut(s) 343, 697
Psp124BI GAGCTC 2 cut(s) 329, 795
PspEI GGTNACC 1 cut(s) 462
PspN4I GGNNCC 2 cut(s) 639, 746
PspPI GGNCC 2 cut(s) 583, 761
PsrI GAACNNNNNNTAC 2 cut(s) 690, 722
PstI CTGCAG 1 cut(s) 55
PsuI RGATCY 2 cut(s) 133, 576
RsaI GTAC 1 cut(s) 609
RsaNI GTAC 1 cut(s) 608
RseI CAYNNNNRTG 1 cut(s) 419
Rsr2I CGGWCCG 1 cut(s) 761
RsrII CGGWCCG 1 cut(s) 761
SacI GAGCTC 2 cut(s) 329, 795
SaqAI TTAA 3 cut(s) 309, 341, 510
SatI GCNGC 2 cut(s) 51, 471
Sau3AI GATC 5 cut(s) 133, 186, 576, 658, 756
Sau96I GGNCC 2 cut(s) 583, 761
SchI GAGTC 2 cut(s) 344, 698
SduI GDGCHC 3 cut(s) 329, 562, 795
SfaNI GCATC 2 cut(s) 632, 654
SfcI CTRYAG 1 cut(s) 51
SinI GGWCC 2 cut(s) 583, 761
SmiMI CAYNNNNRTG 1 cut(s) 419
Sse9I AATT 7 cut(s) 20, 142, 266, 290, 305, 630, 807
SsiI CCGC 4 cut(s) 202, 350, 720, 788
SspMI CTAG 2 cut(s) 131, 717
SstI GAGCTC 2 cut(s) 329, 795
StyI CCWWGG 3 cut(s) 330, 616, 641
TaqII GACCGA 1 cut(s) 749
TasI AATT 7 cut(s) 20, 142, 266, 290, 305, 630, 807
TfiI GAWTC 3 cut(s) 4, 34, 728
Tru1I TTAA 3 cut(s) 309, 341, 510
Tru9I TTAA 3 cut(s) 309, 341, 510
TseI GCWGC 2 cut(s) 50, 470
TspDTI ATGAA 8 cut(s) 17, 87, 135, 198, 279, 431, 564, 794
TspGWI ACGGA 1 cut(s) 399
VpaK11BI GGWCC 2 cut(s) 583, 761
XapI RAATTY 2 cut(s) 290, 630
XspI CTAG 2 cut(s) 131, 717
Zsp2I ATGCAT 1 cut(s) 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.