Rmu_co8123616.1_g000001

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8123616.1
Physical Location & Seq
Reverse (-)
2 .. 582
581 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8123616.1_g000001.1.cds

Sequence Viewer

Length: 581 bp
atggagaagtccatgagaaccgtcttacttcacacgttactaaccattgcaaccattactactagtataggttcatgcaatggaaacctgggtgtgccttgtatagaaagcgaaaaacaagcgcttctcattttcaagcaagatcttaaagatccttcaaatcggctttcatcatgggttgctcaagaagattccaactgctgcaattgggctggagttgtctgtcattactccaccggccacatctatgagctacatcttgacaacccggtggcttccatctcttccttgggtggtaagataaatccttccctgctcaatttaacgcatcttacctacttgaacctaagtaacaataactttcaagggacaaagattcctggcttctttggttctcttaagagtttaactcatcttgacctctcagaagcaagcttcggaggaatggttccccatcaactgggaaatctttccagtctaagccatctctttcttggtggcgacggcctgaaagttgagaacctccaatggatttctggtctttctcggttggaacacctggacatgagtggtgttaatct
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

194

Amino Acids

21.03

Weight (kDa)

6.1

Isoelectric Point (pI)

32.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 460
AclWI GGATC 1 cut(s) 146
AcoI YGGCCR 1 cut(s) 238
AfeI AGCGCT 1 cut(s) 123
AfiI CCNNNNNNNGG 1 cut(s) 460
AflII CTTAAG 1 cut(s) 398
AflIII ACRYGT 1 cut(s) 33
AgsI TTSAA 4 cut(s) 136, 159, 343, 365
AhlI ACTAGT 1 cut(s) 62
AjnI CCWGG 3 cut(s) 87, 379, 558
AloI GAACNNNNNNTCC 2 cut(s) 432, 464
AluBI AGCT 2 cut(s) 253, 435
AluI AGCT 2 cut(s) 253, 435
AlwI GGATC 1 cut(s) 146
Aor51HI AGCGCT 1 cut(s) 123
AoxI GGCC 2 cut(s) 238, 505
ApeKI GCWGC 1 cut(s) 201
Asp700I GAANNNNTTC 1 cut(s) 469
AspLEI GCGC 1 cut(s) 124
AsuC2I CCSGG 1 cut(s) 269
BbvI GCAGC 1 cut(s) 188
BccI CCATC 3 cut(s) 287, 462, 492
BceAI ACGGC 1 cut(s) 520
BciT130I CCWGG 3 cut(s) 89, 381, 560
BcnI CCSGG 1 cut(s) 269
BcuI ACTAGT 1 cut(s) 62
BfaI CTAG 1 cut(s) 63
BfoI RGCGCY 1 cut(s) 125
BfrI CTTAAG 1 cut(s) 398
BglII AGATCT 1 cut(s) 142
BisI GCNGC 1 cut(s) 202
BlsI GCNGC 1 cut(s) 203
Bme1390I CCNGG 4 cut(s) 89, 269, 381, 560
BmiI GGNNCC 1 cut(s) 450
BmrFI CCNGG 4 cut(s) 89, 269, 381, 560
BmrI ACTGGG 1 cut(s) 470
BmsI GCATC 1 cut(s) 337
BmuI ACTGGG 1 cut(s) 470
BplI GAGNNNNNCTC 2 cut(s) 394, 426
BpmI CTGGAG 1 cut(s) 234
BpuEI CTTGAG 1 cut(s) 168
BpuMI CCSGG 1 cut(s) 269
BsaJI CCNNGG 2 cut(s) 88, 288
BsaXI ACNNNNNCTCC 2 cut(s) 432, 462
Bsc4I CCNNNNNNNGG 1 cut(s) 460
Bse118I RCCGGY 1 cut(s) 236
Bse1I ACTGG 2 cut(s) 465, 474
Bse3DI GCAATG 2 cut(s) 45, 85
BseBI CCWGG 3 cut(s) 89, 381, 560
BseDI CCNNGG 2 cut(s) 88, 288
BseLI CCNNNNNNNGG 1 cut(s) 460
BseMI GCAATG 2 cut(s) 45, 85
BseMII CTCAG 1 cut(s) 438
BseNI ACTGG 2 cut(s) 465, 474
BseXI GCAGC 1 cut(s) 188
BshFI GGCC 2 cut(s) 240, 507
BsiSI CCGG 2 cut(s) 237, 269
BslFI GGGAC 1 cut(s) 382
BslI CCNNNNNNNGG 1 cut(s) 460
BsmFI GGGAC 1 cut(s) 382
BsnI GGCC 2 cut(s) 240, 507
Bsp143I GATC 2 cut(s) 142, 151
BspANI GGCC 2 cut(s) 240, 507
BspCNI CTCAG 1 cut(s) 437
BspLI GGNNCC 1 cut(s) 450
BspPI GGATC 1 cut(s) 146
BspTI CTTAAG 1 cut(s) 398
BsrDI GCAATG 2 cut(s) 45, 85
BsrFI RCCGGY 1 cut(s) 236
BsrI ACTGG 2 cut(s) 465, 474
BssAI RCCGGY 1 cut(s) 236
BssECI CCNNGG 2 cut(s) 88, 288
BssMI GATC 2 cut(s) 142, 151
BssT1I CCWWGG 1 cut(s) 288
Bst2UI CCWGG 3 cut(s) 89, 381, 560
Bst4CI ACNGT 1 cut(s) 22
Bst6I CTCTTC 1 cut(s) 289
BstAFI CTTAAG 1 cut(s) 398
BstC8I GCNNGC 1 cut(s) 433
BstDEI CTNAG 3 cut(s) 347, 424, 479
BstH2I RGCGCY 1 cut(s) 125
BstHHI GCGC 1 cut(s) 124
BstKTI GATC 2 cut(s) 145, 154
BstMBI GATC 2 cut(s) 142, 151
BstNI CCWGG 3 cut(s) 89, 381, 560
BstSCI CCNGG 4 cut(s) 87, 267, 379, 558
BstV1I GCAGC 1 cut(s) 188
BstX2I RGATCY 2 cut(s) 142, 151
BstYI RGATCY 2 cut(s) 142, 151
BsuRI GGCC 2 cut(s) 240, 507
Cac8I GCNNGC 1 cut(s) 433
CfoI GCGC 1 cut(s) 124
Cfr10I RCCGGY 1 cut(s) 236
CviAII CATG 4 cut(s) 13, 75, 174, 565
CviJI RGCY 9 cut(s) 166, 212, 240, 253, 275, 384, 435, 483, 507
CviKI_1 RGCY 9 cut(s) 166, 212, 240, 253, 275, 384, 435, 483, 507
DdeI CTNAG 3 cut(s) 347, 424, 479
DpnI GATC 2 cut(s) 144, 153
DpnII GATC 2 cut(s) 142, 151
EaeI YGGCCR 1 cut(s) 238
Eam1104I CTCTTC 1 cut(s) 289
EarI CTCTTC 1 cut(s) 289
Eco130I CCWWGG 1 cut(s) 288
Eco47III AGCGCT 1 cut(s) 123
EcoRII CCWGG 3 cut(s) 87, 379, 558
EcoT14I CCWWGG 1 cut(s) 288
ErhI CCWWGG 1 cut(s) 288
FaeI CATG 4 cut(s) 16, 78, 177, 568
FaiI YATR 7 cut(s) 14, 68, 76, 104, 175, 249, 566
FaqI GGGAC 1 cut(s) 382
FatI CATG 4 cut(s) 12, 74, 173, 564
Fnu4HI GCNGC 1 cut(s) 202
Fsp4HI GCNGC 1 cut(s) 202
FspBI CTAG 1 cut(s) 63
GlaI GCGC 1 cut(s) 123
GluI GCNGC 1 cut(s) 202
GsuI CTGGAG 1 cut(s) 234
HaeII RGCGCY 1 cut(s) 125
HaeIII GGCC 2 cut(s) 240, 507
HapII CCGG 2 cut(s) 237, 269
HhaI GCGC 1 cut(s) 124
Hin1II CATG 4 cut(s) 16, 78, 177, 568
Hin6I GCGC 1 cut(s) 122
HinP1I GCGC 1 cut(s) 122
HindIII AAGCTT 1 cut(s) 433
HinfI GANTC 2 cut(s) 191, 376
HpaII CCGG 2 cut(s) 237, 269
Hpy188I TCNGA 2 cut(s) 427, 440
Hpy188III TCNNGA 3 cut(s) 185, 260, 416
Hpy99I CGWCG 1 cut(s) 506
HpyAV CCTTC 2 cut(s) 165, 318
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4IV ACGT 1 cut(s) 35
HpyCH4V TGCA 3 cut(s) 50, 78, 204
HpyF3I CTNAG 3 cut(s) 347, 424, 479
HpySE526I ACGT 1 cut(s) 35
Hsp92II CATG 4 cut(s) 16, 78, 177, 568
HspAI GCGC 1 cut(s) 122
Kzo9I GATC 2 cut(s) 142, 151
Lsp1109I GCAGC 1 cut(s) 188
LweI GCATC 1 cut(s) 337
MaeI CTAG 1 cut(s) 63
MaeII ACGT 1 cut(s) 35
MaeIII GTNAC 2 cut(s) 36, 350
MalI GATC 2 cut(s) 144, 153
MboI GATC 2 cut(s) 142, 151
MboII GAAGA 2 cut(s) 200, 276
MfeI CAATTG 1 cut(s) 205
MflI RGATCY 2 cut(s) 142, 151
MluCI AATT 2 cut(s) 205, 319
MmeI TCCRAC 2 cut(s) 219, 531
MnlI CCTC 3 cut(s) 431, 434, 533
MroXI GAANNNNTTC 1 cut(s) 469
MseI TTAA 5 cut(s) 147, 323, 399, 407, 576
MslI CAYNNNNRTG 1 cut(s) 246
MspCI CTTAAG 1 cut(s) 398
MspI CCGG 2 cut(s) 237, 269
MspR9I CCNGG 4 cut(s) 89, 269, 381, 560
MunI CAATTG 1 cut(s) 205
MvaI CCWGG 3 cut(s) 89, 381, 560
NciI CCSGG 1 cut(s) 269
NdeII GATC 2 cut(s) 142, 151
NlaIII CATG 4 cut(s) 16, 78, 177, 568
NlaIV GGNNCC 1 cut(s) 450
PdmI GAANNNNTTC 1 cut(s) 469
PfeI GAWTC 2 cut(s) 191, 376
PflMI CCANNNNNTGG 1 cut(s) 460
PkrI GCNGC 1 cut(s) 203
Psp6I CCWGG 3 cut(s) 87, 379, 558
PspGI CCWGG 3 cut(s) 87, 379, 558
PspN4I GGNNCC 1 cut(s) 450
PsuI RGATCY 2 cut(s) 142, 151
RseI CAYNNNNRTG 1 cut(s) 246
SaqAI TTAA 5 cut(s) 147, 323, 399, 407, 576
SatI GCNGC 1 cut(s) 202
Sau3AI GATC 2 cut(s) 142, 151
ScrFI CCNGG 4 cut(s) 89, 269, 381, 560
SfaNI GCATC 1 cut(s) 337
SmiMI CAYNNNNRTG 1 cut(s) 246
SmlI CTYRAG 2 cut(s) 183, 398
SmoI CTYRAG 2 cut(s) 183, 398
SpeI ACTAGT 1 cut(s) 62
Sse9I AATT 2 cut(s) 205, 319
SspMI CTAG 1 cut(s) 63
StyD4I CCNGG 4 cut(s) 87, 267, 379, 558
StyI CCWWGG 1 cut(s) 288
TaaI ACNGT 1 cut(s) 22
TaiI ACGT 1 cut(s) 38
TasI AATT 2 cut(s) 205, 319
TfiI GAWTC 2 cut(s) 191, 376
Tru1I TTAA 5 cut(s) 147, 323, 399, 407, 576
Tru9I TTAA 5 cut(s) 147, 323, 399, 407, 576
TseI GCWGC 1 cut(s) 201
TspDTI ATGAA 2 cut(s) 63, 159
Van91I CCANNNNNTGG 1 cut(s) 460
Vha464I CTTAAG 1 cut(s) 398
XcmI CCANNNNNNNNNTGG 3 cut(s) 286, 491, 533
XmnI GAANNNNTTC 1 cut(s) 469
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.