MD01G1179800.v1.1

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Forward (+)
27949555 .. 27952692
3138 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1179800.v1.1.491

Sequence Viewer

Length: 3138 bp
ATGGAGAGAAGCATGAGAGTTGTTTTACTACTAATCAGGTTTCTAGCCATTGCAACCATTACTTTCAGTATTGGTTTATCCAATGGAAATCCCGGTTGGCCTCCACTTTGCAAAGAAAGTGAAAGACAAGCACTTCTGATGTTCAAGCAAGATCTCAACGACCCTGCCAATCAGCTTGCATCGTGGGTTGCAGAAGAAGGTTCAGACTGTTGCAGTTGGACAAGAGTTGTCTGTGATCACATGACCGGCCACATCCAGGAGCTGCACCTTGATGGTTCCTACTTTCATCCGTATTCCGACCCTTTTGATTTGGATTCCGACTCTTGCTTCAGTGGTAAGATAAATCCTTCTTTGCTCAGTTTAAAGCATCTCAACTACTTGGACTTGAGTAACAATAATTTTCAGGGAACACAAATTCCTAGTTTCTTTGGTTCTATGACAAGTTTAACACACCTTAACCTTGCATACTCAGAGTTTTATGGAATAATTCCTCATAAACTGGGAAATCTCTCCAGTCTACGTTATCTCAATCTCAGTAGTTCCAATGGTTTCAATCTGAAGGTAGAGAATCTTCAGTGGATTTCTGGTCTTTCTCTGCTGAAACACTTGGACTTAAGTTTTGTAAATCTTAGCAAAGCATCCGACTGGTTGCAAGTTACAAACATGCTCCCTTCTTTGGTAGAGTTAGATATGTCTAATTGTCAACTTCATCAAATCACCCCCCTACCCACCACAAATTTTACTTCCCTGGTCGTCCTTGATCTTTCTGGAAACCGTTTTAATTCTTTGATGCCGATGTGGGTTTTCAGTATTAAAAATCTAGTTTCTCTTCGTCTCATTTATTGTTGGTTCCAAGGTCCAATTCCTAGCATTTCACAGAATATCACATCTTTGAGGGAAATTGATTTGTCATTGAATTCTATTAGTCTTGATCCGATTCCCAAATGGCTGTTTAACCAAAAAGACCTTGCCTTGAGTCTAGAATCCAATCAACTTACAGGACAACTTCCAAGCAGTATTCAGAATATGACTGGTCTTAAAGTTCTTAATCTCGGATCGAACGACTTCAATTCTACCATACCTGAATGGTTGTATAGCTTGAACAATCTCGAGTCTTTACTTCTTTCTTCCAATGCCTTGCGTGGTGAAATATCGAGTTCCATTGGAAACATGACATCCCTTGTCAATCTTCACTTAGATAATAATCTGTTGGAAGGGAAAATCCCAAATTCTTTGGGACATCTTTGTAAGTTGAAAGATCTTGATCTGTCAAAGAACCATTTCACGGTTCAAAGACCATCCGTAATCTTTGAAAGTTTGTCCAGATGTGGTCCGAATGGAATAAAATCATTGTCGTTGAGGTATACTAATATATCAGGTCCCATTCCAATGTCTCTAGGAAATCTGTCAAGCTTAGAAAAATTGGACATATCTGGAAATCAGTTTAATGGAACTTTCACAGAAGTTATTGGTCAACTCAAAATGCTAACGGATTTGGATATATCTAATAATTCATTAGAAGATGCAGTGTCGGAAGTTTCTTTTAGCAACCTTACAAAGTTGAAGCATTTCATTGCAAATGGAAACTCATTTACTCTGAAAACCAGTCGAGATTGGGTTCCTCCTTTTCAACTTGAAATTTTGCAATTGGATTCTTGGCATCTGGGACCTGAATGGCCAATGTGGTTGCGGACACAAACGCAATTAACACGTCTAAGCTTATCCTGTACAGGAATTTCAAGTACTGTTCCAACTTGGTTTTGGAACTTAACTTCCAAAGTAAGGTATCTGAATCTCTCTCACAATCAATTGTATGGGCAGATTCAAAACATAGTTGCTGGTCCTATGTCAGTGGTTGATCTTAGTTCTAACCATTTCACTGGTGCATTGCCTATTGTTCCCACCTCATTATTTTGGCTAGATCTTTCCAATTCATCATTTTCTGGATCTGTTTTCCACTTCTTCTGTGATAGGCCAGATGAACCACGGCAACTTCATTTTCTTCATCTCGGGAACAATCTTCTCTCTGGAAAAGTACCCGATTGTTGGATGAGTTGGCAGTACTTGAGCTTCCTAAATTTAGAAAACAACAACCTAACGGGGAATGTCCCAATGTCCATGGGATACTTAGATTGGCTGGAATCGCTGCACTTGCGCAATAATCACCTGTACGGAGAATTGCCACATTCCCTGCAGAACTGTACCAGGTTGTCAGTTGTTGACCTTGGTGAAAATGGGTTTTCCGGAAGCATACCAATATGGATAGGGAAAAGCCTTTCAGAATTGCAGATTCTGAACCTTCGTTCAAATAAGTTTGAAGGAGATATTCCTAATGAAGTTTGTTATTTGACAAGTCTCCAGATATTGGACCTTGCACATAACAAACTCTCAGGAATGATACCGAGATGCTTCCACAATTTGAGCGCCATGGCTGATTTTTCAGAATCACGTGATGCAAGTGTATATGTTATTTTGAATGGGATTAGCGTTCCACTTAGCGTTACAGCGAAAGCAATCTTGGTAACGAAAGGGAGAGAAATGGAATATGGCAAGATTCTGAAATTCGTAAAATTCATGGACCTTTCATGCAACTTTATGTATGGAGAGATCCCTGAAGAACTTACCGACCTCCTCGCATTGAAGTCACTCAATTTATCGAATAACCACTTCACCGGAAGAATTCCTTCAAAGATTGGTAATATGGCACAGTTAGAATCTCTCGATTTTTCCATGAACCAACTTGATGGTGAAATTCCTCAAAGCATGACGAATTTGACATTTCTGAGTCACTTAAACTTGTCCAACAACAATTTGACGGGACGAATTCCGAAAAGCACTCAACTGCAGAGCCTTGATCAGTCGAGCTTCGTCGGCAATGAACTATGCGGAGCTCCACTCAACAAGAATTGCAGCGAGAATGGGGTGATACCGCCACCAACAGTTGAGCACGACGGAGGAGGAGGATACAATTTACTCGAAGATGAGTGGTTCTACGTGAGCTTGGGAGTTGGATTCTTCACGGGGTTTTGGATTGTGCTTGGTTCTTTGTTGGTAAACATGCCATGGAGCATTCTTCTTTCACAGTTGCTGAATAGGATAGTGCTTAAAATGTATCATGTAATTGTTGAATATGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1046

Amino Acids

116.84

Weight (kDa)

5.59

Isoelectric Point (pI)

30.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 40 - 79 1.2e-12 Leucine rich repeat N-terminal domain
LRR_14 PF23598 119 - 228 2.4e-06 Leucine-rich repeat region
LRR_8 PF13855 123 - 180 2.5e-08 Leucine rich repeat
LRR_8 PF13855 325 - 380 2.2e-07 Leucine rich repeat
LRR_14 PF23598 327 - 453 6.2e-08 Leucine-rich repeat region
LRR_14 PF23598 461 - 577 3e-09 Leucine-rich repeat region
LRR_8 PF13855 471 - 530 5.7e-07 Leucine rich repeat
LRR_8 PF13855 736 - 796 4.3e-06 Leucine rich repeat
LRR_8 PF13855 761 - 809 2.9e-06 Leucine rich repeat
LRR_14 PF23598 855 - 955 9.9e-09 Leucine-rich repeat region
LRR_8 PF13855 880 - 938 1e-05 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 2156
AccB7I CCANNNNNTGG 1 cut(s) 2365
AccI GTMKAC 2 cut(s) 517, 1364
AccIII TCCGGA 1 cut(s) 2243
AciI CCGC 3 cut(s) 1690, 2886, 2930
AclWI GGATC 4 cut(s) 926, 1063, 1954, 2602
AcoI YGGCCR 2 cut(s) 247, 1676
AcuI CTGAAG 4 cut(s) 313, 557, 578, 2634
AcvI CACGTG 1 cut(s) 2450
AfaI GTAC 6 cut(s) 1729, 1744, 2037, 2063, 2171, 2203
AfiI CCNNNNNNNGG 6 cut(s) 256, 676, 1285, 1782, 2046, 2365
AflII CTTAAG 1 cut(s) 613
AflIII ACRYGT 1 cut(s) 1709
AjiI CACGTC 1 cut(s) 1712
AjnI CCWGG 3 cut(s) 255, 747, 2204
AjuI GAANNNNNNNTTGG 6 cut(s) 79, 111, 846, 878, 2501, 2533
AloI GAACNNNNNNTCC 4 cut(s) 400, 432, 1757, 1789
AluBI AGCT 9 cut(s) 175, 262, 1098, 1413, 1719, 2070, 2865, 2891, 3000
AluI AGCT 9 cut(s) 175, 262, 1098, 1413, 1719, 2070, 2865, 2891, 3000
Alw21I GWGCWC 2 cut(s) 2893, 2949
Alw26I GTCTC 3 cut(s) 839, 1398, 2360
AlwI GGATC 4 cut(s) 926, 1063, 1954, 2602
AlwNI CAGNNNCTG 3 cut(s) 262, 2293, 3088
Ama87I CYCGRG 2 cut(s) 1109, 2009
Aor13HI TCCGGA 1 cut(s) 2243
AoxI GGCC 4 cut(s) 98, 247, 1676, 1973
ApeKI GCWGC 3 cut(s) 262, 2146, 2910
ArsI GACNNNNNNTTYG 2 cut(s) 602, 634
Asp700I GAANNNNTTC 4 cut(s) 1064, 1280, 1568, 2683
AspLEI GCGC 2 cut(s) 2157, 2426
AspS9I GGNCC 7 cut(s) 857, 1331, 1379, 1667, 1841, 2368, 2578
AsuC2I CCSGG 1 cut(s) 93
AsuHPI GGTGA 7 cut(s) 709, 1157, 2156, 2240, 2662, 2759, 2935
AvaI CYCGRG 2 cut(s) 1109, 2009
AvaII GGWCC 7 cut(s) 857, 1331, 1379, 1667, 1841, 2368, 2578
BalI TGGCCA 1 cut(s) 1678
BanII GRGCYC 1 cut(s) 2893
BarI GAAGNNNNNNTAC 4 cut(s) 555, 587, 2054, 2086
BbrPI CACGTG 1 cut(s) 2450
Bbv12I GWGCWC 2 cut(s) 2893, 2949
BbvI GCAGC 3 cut(s) 249, 2133, 2922
BccI CCATC 3 cut(s) 266, 1306, 2738
BceAI ACGGC 1 cut(s) 2003
BciT130I CCWGG 3 cut(s) 257, 749, 2206
BciVI GTATCC 2 cut(s) 2117, 2957
BclI TGATCA 2 cut(s) 235, 2854
BcnI CCSGG 1 cut(s) 93
BcoDI GTCTC 3 cut(s) 839, 1398, 2360
BfaI CTAG 7 cut(s) 44, 420, 821, 867, 980, 1397, 1919
BfmI CTRYAG 2 cut(s) 2192, 2843
BfoI RGCGCY 1 cut(s) 2427
BfrI CTTAAG 1 cut(s) 613
BfuI GTATCC 2 cut(s) 2117, 2957
BglII AGATCT 3 cut(s) 151, 1258, 1921
BisI GCNGC 3 cut(s) 263, 2147, 2911
BlsI GCNGC 3 cut(s) 264, 2148, 2912
BmcAI AGTACT 2 cut(s) 1744, 2063
Bme1390I CCNGG 4 cut(s) 93, 257, 749, 2206
Bme18I GGWCC 7 cut(s) 857, 1331, 1379, 1667, 1841, 2368, 2578
BmeT110I CYCGRG 2 cut(s) 1109, 2009
BmgBI CACGTC 1 cut(s) 1712
BmgT120I GGNCC 7 cut(s) 857, 1331, 1379, 1667, 1841, 2368, 2578
BmiI GGNNCC 5 cut(s) 277, 851, 1381, 1620, 1668
BmrFI CCNGG 4 cut(s) 93, 257, 749, 2206
BmrI ACTGGG 1 cut(s) 509
BmsI GCATC 8 cut(s) 188, 376, 647, 780, 1513, 1669, 2396, 2443
BmuI ACTGGG 1 cut(s) 509
BplI GAGNNNNNCTC 2 cut(s) 2880, 2912
BpmI CTGGAG 2 cut(s) 496, 2342
BpuEI CTTGAG 3 cut(s) 406, 994, 2086
BpuMI CCSGG 1 cut(s) 93
BsaAI YACGTR 2 cut(s) 2450, 2995
BsaBI GATNNNNATC 2 cut(s) 1203, 1263
BsaJI CCNNGG 7 cut(s) 747, 853, 1985, 2118, 2224, 2427, 3062
BsaWI WCCGGW 2 cut(s) 2243, 2672
Bsc4I CCNNNNNNNGG 6 cut(s) 256, 676, 1285, 1782, 2046, 2365
Bse118I RCCGGY 1 cut(s) 245
Bse1I ACTGG 6 cut(s) 504, 513, 650, 1036, 1605, 1885
Bse3DI GCAATG 4 cut(s) 48, 1572, 1886, 2881
Bse8I GATNNNNATC 2 cut(s) 1203, 1263
BseAI TCCGGA 1 cut(s) 2243
BseBI CCWGG 3 cut(s) 257, 749, 2206
BseDI CCNNGG 7 cut(s) 747, 853, 1985, 2118, 2224, 2427, 3062
BseGI GGATG 6 cut(s) 252, 286, 638, 1175, 1298, 2055
BseJI GATNNNNATC 2 cut(s) 1203, 1263
BseLI CCNNNNNNNGG 6 cut(s) 256, 676, 1285, 1782, 2046, 2365
BseMI GCAATG 4 cut(s) 48, 1572, 1886, 2881
BseMII CTCAG 5 cut(s) 370, 483, 547, 2403, 2774
BseNI ACTGG 6 cut(s) 504, 513, 650, 1036, 1605, 1885
BseRI GAGGAG 3 cut(s) 2621, 2970, 2973
BseXI GCAGC 3 cut(s) 249, 2133, 2922
BsgI GTGCAG 2 cut(s) 248, 2132
BshFI GGCC 4 cut(s) 100, 249, 1678, 1975
BsiHKAI GWGCWC 2 cut(s) 2893, 2949
BsiHKCI CYCGRG 2 cut(s) 1109, 2009
BsiSI CCGG 4 cut(s) 93, 246, 2244, 2673
BslFI GGGAC 5 cut(s) 1251, 1365, 1680, 2093, 2832
BslI CCNNNNNNNGG 6 cut(s) 256, 676, 1285, 1782, 2046, 2365
BsmAI GTCTC 3 cut(s) 839, 1398, 2360
BsmBI CGTCTC 1 cut(s) 839
BsmFI GGGAC 5 cut(s) 1251, 1365, 1680, 2093, 2832
BsmI GAATGC 1 cut(s) 3069
BsnI GGCC 4 cut(s) 100, 249, 1678, 1975
BsoBI CYCGRG 2 cut(s) 1109, 2009
Bsp1286I GDGCHC 2 cut(s) 2893, 2949
Bsp13I TCCGGA 1 cut(s) 2243
Bsp1407I TGTACA 1 cut(s) 1727
Bsp19I CCATGG 3 cut(s) 2118, 2427, 3062
BspACI CCGC 3 cut(s) 1690, 2886, 2930
BspANI GGCC 4 cut(s) 100, 249, 1678, 1975
BspCNI CTCAG 5 cut(s) 369, 482, 546, 2402, 2775
BspEI TCCGGA 1 cut(s) 2243
BspLI GGNNCC 5 cut(s) 277, 851, 1381, 1620, 1668
BspMAI CTGCAG 2 cut(s) 2196, 2847
BspPI GGATC 4 cut(s) 926, 1063, 1954, 2602
BspTI CTTAAG 1 cut(s) 613
BsrDI GCAATG 4 cut(s) 48, 1572, 1886, 2881
BsrFI RCCGGY 1 cut(s) 245
BsrGI TGTACA 1 cut(s) 1727
BsrI ACTGG 6 cut(s) 504, 513, 650, 1036, 1605, 1885
BssAI RCCGGY 1 cut(s) 245
BssECI CCNNGG 7 cut(s) 747, 853, 1985, 2118, 2224, 2427, 3062
BssNAI GTATAC 1 cut(s) 1365
BssT1I CCWWGG 5 cut(s) 853, 2118, 2224, 2427, 3062
Bst1107I GTATAC 1 cut(s) 1365
Bst2UI CCWGG 3 cut(s) 257, 749, 2206
Bst4CI ACNGT 8 cut(s) 209, 776, 1288, 1747, 2201, 2709, 2941, 3084
Bst6I CTCTTC 1 cut(s) 834
BstAFI CTTAAG 1 cut(s) 613
BstAUI TGTACA 1 cut(s) 1727
BstBAI YACGTR 2 cut(s) 2450, 2995
BstC8I GCNNGC 1 cut(s) 177
BstDSI CCRYGG 4 cut(s) 1985, 2118, 2427, 3062
BstF5I GGATG 6 cut(s) 252, 286, 638, 1175, 1298, 2055
BstH2I RGCGCY 1 cut(s) 2427
BstHHI GCGC 2 cut(s) 2157, 2426
BstMAI GTCTC 3 cut(s) 839, 1398, 2360
BstMWI GCNNNNNNNGC 3 cut(s) 2143, 2152, 2871
BstNI CCWGG 3 cut(s) 257, 749, 2206
BstNSI RCATGY 2 cut(s) 667, 3061
BstSCI CCNGG 4 cut(s) 91, 255, 747, 2204
BstSFI CTRYAG 2 cut(s) 2192, 2843
BstV1I GCAGC 3 cut(s) 249, 2133, 2922
BstX2I RGATCY 5 cut(s) 151, 1258, 1921, 1946, 2607
BstXI CCANNNNNNTGG 2 cut(s) 1880, 2744
BstYI RGATCY 5 cut(s) 151, 1258, 1921, 1946, 2607
BstZ17I GTATAC 1 cut(s) 1365
BsuI GTATCC 2 cut(s) 2117, 2957
BsuRI GGCC 4 cut(s) 100, 249, 1678, 1975
BtgI CCRYGG 4 cut(s) 1985, 2118, 2427, 3062
BtrI CACGTC 1 cut(s) 1712
BtsCI GGATG 6 cut(s) 252, 286, 638, 1175, 1298, 2055
BtsI GCAGTG 1 cut(s) 1533
BtsIMutI CAGTG 5 cut(s) 337, 581, 1533, 1857, 1878
Cac8I GCNNGC 1 cut(s) 177
CaiI CAGNNNCTG 3 cut(s) 262, 2293, 3088
CfoI GCGC 2 cut(s) 2157, 2426
Cfr10I RCCGGY 1 cut(s) 245
Cfr13I GGNCC 7 cut(s) 857, 1331, 1379, 1667, 1841, 2368, 2578
CsiI ACCWGGT 1 cut(s) 2204
Csp6I GTAC 6 cut(s) 1728, 1743, 2036, 2062, 2170, 2202
CviQI GTAC 6 cut(s) 1728, 1743, 2036, 2062, 2170, 2202
DraI TTTAAA 1 cut(s) 363
EaeI YGGCCR 2 cut(s) 247, 1676
Eam1104I CTCTTC 1 cut(s) 834
EarI CTCTTC 1 cut(s) 834
Ecl136II GAGCTC 1 cut(s) 2891
Eco130I CCWWGG 5 cut(s) 853, 2118, 2224, 2427, 3062
Eco24I GRGCYC 1 cut(s) 2893
Eco47I GGWCC 7 cut(s) 857, 1331, 1379, 1667, 1841, 2368, 2578
Eco53kI GAGCTC 1 cut(s) 2891
Eco57I CTGAAG 4 cut(s) 313, 557, 578, 2634
Eco72I CACGTG 1 cut(s) 2450
Eco88I CYCGRG 2 cut(s) 1109, 2009
EcoICRI GAGCTC 1 cut(s) 2891
EcoO109I RGGNCCY 2 cut(s) 1379, 1667
EcoRI GAATTC 3 cut(s) 916, 2679, 2823
EcoRII CCWGG 3 cut(s) 255, 747, 2204
EcoT14I CCWWGG 5 cut(s) 853, 2118, 2224, 2427, 3062
EcoT38I GRGCYC 1 cut(s) 2893
ErhI CCWWGG 5 cut(s) 853, 2118, 2224, 2427, 3062
Esp3I CGTCTC 1 cut(s) 839
FalI AAGNNNNNCTT 2 cut(s) 2668, 2700
FaqI GGGAC 5 cut(s) 1251, 1365, 1680, 2093, 2832
FbaI TGATCA 2 cut(s) 235, 2854
FblI GTMKAC 2 cut(s) 517, 1364
Fnu4HI GCNGC 3 cut(s) 263, 2147, 2911
FokI GGATG 6 cut(s) 239, 273, 625, 1162, 1285, 2062
FriOI GRGCYC 1 cut(s) 2893
Fsp4HI GCNGC 3 cut(s) 263, 2147, 2911
FspBI CTAG 7 cut(s) 44, 420, 821, 867, 980, 1397, 1919
FspI TGCGCA 1 cut(s) 2156
GlaI GCGC 2 cut(s) 2156, 2425
GluI GCNGC 3 cut(s) 263, 2147, 2911
GsuI CTGGAG 2 cut(s) 496, 2342
HaeII RGCGCY 1 cut(s) 2427
HaeIII GGCC 4 cut(s) 100, 249, 1678, 1975
HapII CCGG 4 cut(s) 93, 246, 2244, 2673
HhaI GCGC 2 cut(s) 2157, 2426
Hin6I GCGC 2 cut(s) 2155, 2424
HinP1I GCGC 2 cut(s) 2155, 2424
HincII GTYRAC 3 cut(s) 704, 1475, 2221
HindII GTYRAC 3 cut(s) 704, 1475, 2221
HindIII AAGCTT 2 cut(s) 1411, 1717
HpaII CCGG 4 cut(s) 93, 246, 2244, 2673
HphI GGTGA 7 cut(s) 709, 1157, 2156, 2240, 2662, 2759, 2935
Hpy166II GTNNAC 6 cut(s) 518, 704, 1365, 1475, 2221, 3055
Hpy8I GTNNAC 6 cut(s) 518, 704, 1365, 1475, 2221, 3055
Hpy99I CGWCG 2 cut(s) 2873, 2954
HpyAV CCTTC 8 cut(s) 191, 357, 553, 681, 1208, 2309, 2312, 2694
HpyCH4III ACNGT 8 cut(s) 209, 776, 1288, 1747, 2201, 2709, 2941, 3084
HpyCH4IV ACGT 4 cut(s) 520, 1711, 2449, 2994
HpyF10VI GCNNNNNNNGC 3 cut(s) 2143, 2152, 2871
HpySE526I ACGT 4 cut(s) 520, 1711, 2449, 2994
HspAI GCGC 2 cut(s) 2155, 2424
Kpn2I TCCGGA 1 cut(s) 2243
Ksp22I TGATCA 2 cut(s) 235, 2854
LmnI GCTCC 5 cut(s) 259, 672, 2888, 2896, 3066
Lsp1109I GCAGC 3 cut(s) 249, 2133, 2922
LweI GCATC 8 cut(s) 188, 376, 647, 780, 1513, 1669, 2396, 2443
MabI ACCWGGT 1 cut(s) 2204
MaeI CTAG 7 cut(s) 44, 420, 821, 867, 980, 1397, 1919
MaeII ACGT 4 cut(s) 520, 1711, 2449, 2994
MaeIII GTNAC 6 cut(s) 389, 655, 2500, 2521, 2643, 2786
MfeI CAATTG 2 cut(s) 1646, 1808
MflI RGATCY 5 cut(s) 151, 1258, 1921, 1946, 2607
MhlI GDGCHC 2 cut(s) 2893, 2949
MlsI TGGCCA 1 cut(s) 1678
MluNI TGGCCA 1 cut(s) 1678
MlyI GAGTC 4 cut(s) 314, 985, 1121, 2794
Mox20I TGGCCA 1 cut(s) 1678
MroI TCCGGA 1 cut(s) 2243
MroXI GAANNNNTTC 4 cut(s) 1064, 1280, 1568, 2683
MscI TGGCCA 1 cut(s) 1678
MslI CAYNNNNRTG 2 cut(s) 270, 1388
Msp20I TGGCCA 1 cut(s) 1678
MspCI CTTAAG 1 cut(s) 613
MspI CCGG 4 cut(s) 93, 246, 2244, 2673
MspR9I CCNGG 4 cut(s) 93, 257, 749, 2206
MunI CAATTG 2 cut(s) 1646, 1808
Mva1269I GAATGC 1 cut(s) 3069
MvaI CCWGG 3 cut(s) 257, 749, 2206
MwoI GCNNNNNNNGC 3 cut(s) 2143, 2152, 2871
NciI CCSGG 1 cut(s) 93
NcoI CCATGG 3 cut(s) 2118, 2427, 3062
NlaIV GGNNCC 5 cut(s) 277, 851, 1381, 1620, 1668
NmuCI GTSAC 2 cut(s) 2643, 2786
NsbI TGCGCA 1 cut(s) 2156
NspI RCATGY 2 cut(s) 667, 3061
PaeR7I CTCGAG 1 cut(s) 1109
PcsI WCGNNNNNNNCGW 1 cut(s) 1059
PctI GAATGC 1 cut(s) 3069
PdmI GAANNNNTTC 4 cut(s) 1064, 1280, 1568, 2683
PflMI CCANNNNNTGG 1 cut(s) 2365
PfoI TCCNGGA 1 cut(s) 255
PkrI GCNGC 3 cut(s) 264, 2148, 2912
PleI GAGTC 4 cut(s) 314, 984, 1120, 2793
PmaCI CACGTG 1 cut(s) 2450
PmlI CACGTG 1 cut(s) 2450
PpsI GAGTC 4 cut(s) 314, 984, 1120, 2793
Ppu21I YACGTR 2 cut(s) 2450, 2995
PpuMI RGGWCCY 2 cut(s) 1379, 1667
Psp124BI GAGCTC 1 cut(s) 2893
Psp5II RGGWCCY 2 cut(s) 1379, 1667
Psp6I CCWGG 3 cut(s) 255, 747, 2204
PspCI CACGTG 1 cut(s) 2450
PspGI CCWGG 3 cut(s) 255, 747, 2204
PspN4I GGNNCC 5 cut(s) 277, 851, 1381, 1620, 1668
PspPI GGNCC 7 cut(s) 857, 1331, 1379, 1667, 1841, 2368, 2578
PspPPI RGGWCCY 2 cut(s) 1379, 1667
PstI CTGCAG 2 cut(s) 2196, 2847
PstNI CAGNNNCTG 3 cut(s) 262, 2293, 3088
PsuI RGATCY 5 cut(s) 151, 1258, 1921, 1946, 2607
RsaI GTAC 6 cut(s) 1729, 1744, 2037, 2063, 2171, 2203
RsaNI GTAC 6 cut(s) 1728, 1743, 2036, 2062, 2170, 2202
RseI CAYNNNNRTG 2 cut(s) 270, 1388
SacI GAGCTC 1 cut(s) 2893
SatI GCNGC 3 cut(s) 263, 2147, 2911
Sau96I GGNCC 7 cut(s) 857, 1331, 1379, 1667, 1841, 2368, 2578
ScaI AGTACT 2 cut(s) 1744, 2063
SchI GAGTC 4 cut(s) 314, 985, 1121, 2794
ScrFI CCNGG 4 cut(s) 93, 257, 749, 2206
SduI GDGCHC 2 cut(s) 2893, 2949
SexAI ACCWGGT 1 cut(s) 2204
SfaNI GCATC 8 cut(s) 188, 376, 647, 780, 1513, 1669, 2396, 2443
SfcI CTRYAG 2 cut(s) 2192, 2843
Sfr274I CTCGAG 1 cut(s) 1109
SinI GGWCC 7 cut(s) 857, 1331, 1379, 1667, 1841, 2368, 2578
SlaI CTCGAG 1 cut(s) 1109
SmiMI CAYNNNNRTG 2 cut(s) 270, 1388
SmlI CTYRAG 5 cut(s) 385, 613, 973, 1109, 2065
SmoI CTYRAG 5 cut(s) 385, 613, 973, 1109, 2065
SsiI CCGC 3 cut(s) 1690, 2886, 2930
SspMI CTAG 7 cut(s) 44, 420, 821, 867, 980, 1397, 1919
SstI GAGCTC 1 cut(s) 2893
StyD4I CCNGG 4 cut(s) 91, 255, 747, 2204
StyI CCWWGG 5 cut(s) 853, 2118, 2224, 2427, 3062
TaaI ACNGT 8 cut(s) 209, 776, 1288, 1747, 2201, 2709, 2941, 3084
TaiI ACGT 4 cut(s) 523, 1714, 2452, 2997
TaqI TCGA 8 cut(s) 1058, 1110, 1154, 1609, 2657, 2721, 2861, 2976
TatI WGTACW 3 cut(s) 1727, 1742, 2061
TscAI CASTG 5 cut(s) 337, 581, 1533, 1857, 1885
TseFI GTSAC 2 cut(s) 2643, 2786
TseI GCWGC 3 cut(s) 262, 2146, 2910
Tsp45I GTSAC 2 cut(s) 2643, 2786
TspGWI ACGGA 5 cut(s) 279, 1291, 1505, 2187, 2967
TspRI CASTG 5 cut(s) 337, 581, 1533, 1857, 1885
Van91I CCANNNNNTGG 1 cut(s) 2365
Vha464I CTTAAG 1 cut(s) 613
VpaK11BI GGWCC 7 cut(s) 857, 1331, 1379, 1667, 1841, 2368, 2578
XbaI TCTAGA 1 cut(s) 979
XceI RCATGY 2 cut(s) 667, 3061
XcmI CCANNNNNNNNNTGG 1 cut(s) 1758
XhoI CTCGAG 1 cut(s) 1109
XmiI GTMKAC 2 cut(s) 517, 1364
XmnI GAANNNNTTC 4 cut(s) 1064, 1280, 1568, 2683
XspI CTAG 7 cut(s) 44, 420, 821, 867, 980, 1397, 1919
ZrmI AGTACT 2 cut(s) 1744, 2063
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.