pycom01g18930

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
17716204 .. 17719007
2804 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g18930.1

Sequence Viewer

Length: 543 bp
ATGAGTTGGCAATACTTGAGATTCCTAAATTTAGAAATCAACCACCTAACTGGGAATGTCCCAATGTCCACGAGATACTTACAAAAGCTGGACTCACTGCACTTGCGCAATAATCACCTGTACGGCAAATTGCCACATTCCCTGCAAAATTGTACCTCGTTGTCAGTTGTTGACCTTAGAGGAAATGGGTTTTCCGGAAGCATACCAATATGGATAGGGAAAAGCCTTTCATGGTTAAATGTTCTTAACCTTCGTTCAAATAAATTTGAAGGAGATATTCCTAATGAAGTTTGTTATTTGAAAAGTCTCCAGATATTGGACCTTGCACATAACAAACTCTCAGGAATGATACCGAGATGCTTCCACAATTTGAGCGCCTTGGCTATTTTATCAGAATCATTTGATGAGGGTGAAGTTCCAGAGAATGCAATCTTGGTAACGAAAGGGATAAAAATGGAATTACTCCCCCTCACTTGTACTATCCAGAGATTTACTGTAATAAGGGTTAGTTTCATGAAATCTAACATCCTTGGAAACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

181

Amino Acids

20.37

Weight (kDa)

8.96

Isoelectric Point (pI)

43.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 46 - 131 1.8e-07 Leucine-rich repeat region
LRR_8 PF13855 79 - 130 1.1e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 107
AccB7I CCANNNNNTGG 1 cut(s) 316
AccIII TCCGGA 1 cut(s) 194
AcsI RAATTY 2 cut(s) 28, 263
AfaI GTAC 3 cut(s) 122, 154, 478
AfiI CCNNNNNNNGG 1 cut(s) 316
AgsI TTSAA 3 cut(s) 258, 269, 301
AjuI GAANNNNNNNTTGG 2 cut(s) 416, 448
AluBI AGCT 1 cut(s) 88
AluI AGCT 1 cut(s) 88
Alw26I GTCTC 1 cut(s) 311
Aor13HI TCCGGA 1 cut(s) 194
ApoI RAATTY 2 cut(s) 28, 263
AspLEI GCGC 2 cut(s) 108, 377
AspS9I GGNCC 1 cut(s) 319
AsuHPI GGTGA 2 cut(s) 107, 422
AvaII GGWCC 1 cut(s) 319
BauI CACGAG 1 cut(s) 70
BceAI ACGGC 1 cut(s) 139
BcoDI GTCTC 1 cut(s) 311
BfoI RGCGCY 1 cut(s) 378
Bme18I GGWCC 1 cut(s) 319
BmgT120I GGNCC 1 cut(s) 319
BmrI ACTGGG 1 cut(s) 60
BmsI GCATC 1 cut(s) 347
BmuI ACTGGG 1 cut(s) 60
BpmI CTGGAG 1 cut(s) 293
BpuEI CTTGAG 1 cut(s) 37
BsaJI CCNNGG 2 cut(s) 378, 529
BsaWI WCCGGW 1 cut(s) 194
Bsc4I CCNNNNNNNGG 1 cut(s) 316
Bse1I ACTGG 1 cut(s) 55
BseAI TCCGGA 1 cut(s) 194
BseDI CCNNGG 2 cut(s) 378, 529
BseGI GGATG 1 cut(s) 525
BseLI CCNNNNNNNGG 1 cut(s) 316
BseMII CTCAG 1 cut(s) 354
BseNI ACTGG 1 cut(s) 55
BsgI GTGCAG 1 cut(s) 83
BsiSI CCGG 1 cut(s) 195
BslFI GGGAC 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 316
BsmAI GTCTC 1 cut(s) 311
BsmFI GGGAC 1 cut(s) 44
BsmI GAATGC 1 cut(s) 430
Bsp13I TCCGGA 1 cut(s) 194
BspCNI CTCAG 1 cut(s) 353
BspEI TCCGGA 1 cut(s) 194
BspHI TCATGA 1 cut(s) 513
BsrI ACTGG 1 cut(s) 55
BssECI CCNNGG 2 cut(s) 378, 529
BssSI CACGAG 1 cut(s) 70
BssT1I CCWWGG 2 cut(s) 378, 529
Bst2BI CACGAG 1 cut(s) 70
Bst4CI ACNGT 1 cut(s) 496
BstDEI CTNAG 2 cut(s) 176, 340
BstF5I GGATG 1 cut(s) 525
BstH2I RGCGCY 1 cut(s) 378
BstHHI GCGC 2 cut(s) 108, 377
BstMAI GTCTC 1 cut(s) 311
BstXI CCANNNNNNTGG 1 cut(s) 50
BtsCI GGATG 1 cut(s) 525
BtsI GCAGTG 1 cut(s) 95
BtsIMutI CAGTG 1 cut(s) 95
CciI TCATGA 1 cut(s) 513
CfoI GCGC 2 cut(s) 108, 377
Cfr13I GGNCC 1 cut(s) 319
Csp6I GTAC 3 cut(s) 121, 153, 477
CviAII CATG 2 cut(s) 231, 514
CviJI RGCY 3 cut(s) 88, 225, 383
CviKI_1 RGCY 3 cut(s) 88, 225, 383
CviQI GTAC 3 cut(s) 121, 153, 477
DdeI CTNAG 2 cut(s) 176, 340
Eco130I CCWWGG 2 cut(s) 378, 529
Eco47I GGWCC 1 cut(s) 319
EcoT14I CCWWGG 2 cut(s) 378, 529
ErhI CCWWGG 2 cut(s) 378, 529
FaeI CATG 2 cut(s) 234, 517
FaiI YATR 5 cut(s) 203, 211, 232, 330, 515
FaqI GGGAC 1 cut(s) 44
FatI CATG 2 cut(s) 230, 513
FokI GGATG 1 cut(s) 512
FspI TGCGCA 1 cut(s) 107
GlaI GCGC 2 cut(s) 107, 376
GsuI CTGGAG 1 cut(s) 293
HaeII RGCGCY 1 cut(s) 378
HapII CCGG 1 cut(s) 195
HhaI GCGC 2 cut(s) 108, 377
Hin1II CATG 2 cut(s) 234, 517
Hin6I GCGC 2 cut(s) 106, 375
HinP1I GCGC 2 cut(s) 106, 375
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 3 cut(s) 21, 92, 395
HpaII CCGG 1 cut(s) 195
HphI GGTGA 2 cut(s) 107, 422
Hpy166II GTNNAC 2 cut(s) 69, 172
Hpy188I TCNGA 1 cut(s) 394
Hpy188III TCNNGA 6 cut(s) 195, 310, 342, 419, 484, 514
Hpy8I GTNNAC 2 cut(s) 69, 172
HpyAV CCTTC 2 cut(s) 260, 263
HpyCH4III ACNGT 1 cut(s) 496
HpyCH4V TGCA 4 cut(s) 100, 145, 326, 428
HpyF3I CTNAG 2 cut(s) 176, 340
Hsp92II CATG 2 cut(s) 234, 517
HspAI GCGC 2 cut(s) 106, 375
Kpn2I TCCGGA 1 cut(s) 194
LpnPI CCDG 9 cut(s) 36, 74, 131, 155, 208, 323, 327, 432, 497
LweI GCATC 1 cut(s) 347
MaeIII GTNAC 1 cut(s) 436
MluCI AATT 7 cut(s) 28, 128, 148, 263, 367, 458, 538
MlyI GAGTC 1 cut(s) 86
MnlI CCTC 4 cut(s) 166, 173, 400, 479
MroI TCCGGA 1 cut(s) 194
MseI TTAA 3 cut(s) 236, 246, 541
MspI CCGG 1 cut(s) 195
Mva1269I GAATGC 1 cut(s) 430
NlaIII CATG 2 cut(s) 234, 517
NsbI TGCGCA 1 cut(s) 107
PagI TCATGA 1 cut(s) 513
PctI GAATGC 1 cut(s) 430
PfeI GAWTC 2 cut(s) 21, 395
PflMI CCANNNNNTGG 1 cut(s) 316
PleI GAGTC 1 cut(s) 86
PpsI GAGTC 1 cut(s) 86
PspPI GGNCC 1 cut(s) 319
RsaI GTAC 3 cut(s) 122, 154, 478
RsaNI GTAC 3 cut(s) 121, 153, 477
SaqAI TTAA 3 cut(s) 236, 246, 541
Sau96I GGNCC 1 cut(s) 319
SchI GAGTC 1 cut(s) 86
SetI ASST 7 cut(s) 48, 90, 120, 158, 177, 252, 324
SfaNI GCATC 1 cut(s) 347
SinI GGWCC 1 cut(s) 319
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
Sse9I AATT 7 cut(s) 28, 128, 148, 263, 367, 458, 538
StyI CCWWGG 2 cut(s) 378, 529
TaaI ACNGT 1 cut(s) 496
TasI AATT 7 cut(s) 28, 128, 148, 263, 367, 458, 538
TatI WGTACW 1 cut(s) 476
TfiI GAWTC 2 cut(s) 21, 395
Tru1I TTAA 3 cut(s) 236, 246, 541
Tru9I TTAA 3 cut(s) 236, 246, 541
TscAI CASTG 1 cut(s) 102
TspDTI ATGAA 4 cut(s) 219, 300, 502, 530
TspRI CASTG 1 cut(s) 102
Van91I CCANNNNNTGG 1 cut(s) 316
VpaK11BI GGWCC 1 cut(s) 319
XapI RAATTY 2 cut(s) 28, 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.