MD01G1178900.v1.1

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Forward (+)
27878764 .. 27879411
648 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1178900.v1.1.491

Sequence Viewer

Length: 648 bp
ATGTCTGAACTTTCAGATAATGCAATCTTGGTAACGAAAGGGATAGAAATGGAATATAGCAAGATTCTGGGATTCGTAAAAGGCATGGATCTTTCATGCAACTTTATGTATGGAGAGATCCCTGAAGAACTTACTGGCCTCCTCGCATTGCAGTCACTCAATTTATCGAATAATCGCTTCACCGGAAGAATTCCTTCAAAGATTGGTAATATGGCAGGGTTAGAATCTCTCGATTTTTCCATGAACCAACTTGATGGTGAAATTCCTCCAAGCATGACGAATTTGACATTTCTGAGTCACTTAAACTTGGCCTACAACAATTTGACGGGACGAATTCCAGAAAGCACTCAACTGCAAAGCCTTGATCAGTCGAGCTTCTTCGGCAACGAACTATGCGGAGCTCCACTCAACAAGAATTGCCGCGCGAATGGGGTGATACCGCCACCAACAGTTGAGCAAGATGGAGGAGGAGGATACTGTTTACTCAAAGACGAGTGGTTCTACGTGAGCTTGGGAGTTGGATTCTTCACGGGGTTTTGGATGGTGCTTGGTTCTTTGCTGGTAAACATGCCATGGAGCATTCTTCTTTCACAGTTGCTGAATAGGATAGTGCTTAAAATGTATCATGTAATTGTTGAATATGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

216

Amino Acids

23.78

Weight (kDa)

4.69

Isoelectric Point (pI)

44.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 33 - 124 2.3e-07 Leucine-rich repeat region
LRR_8 PF13855 50 - 108 5.6e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 423, 425
AciI CCGC 3 cut(s) 396, 421, 440
AclWI GGATC 2 cut(s) 96, 112
AcsI RAATTY 4 cut(s) 189, 261, 280, 333
AcuI CTGAAG 1 cut(s) 144
AgsI TTSAA 2 cut(s) 198, 638
AluBI AGCT 3 cut(s) 375, 401, 510
AluI AGCT 3 cut(s) 375, 401, 510
Alw21I GWGCWC 1 cut(s) 403
AlwI GGATC 2 cut(s) 96, 112
AlwNI CAGNNNCTG 1 cut(s) 598
AoxI GGCC 2 cut(s) 136, 309
ApoI RAATTY 4 cut(s) 189, 261, 280, 333
Asp700I GAANNNNTTC 1 cut(s) 193
AspLEI GCGC 1 cut(s) 425
AsuHPI GGTGA 3 cut(s) 172, 269, 445
BanII GRGCYC 1 cut(s) 403
Bbv12I GWGCWC 1 cut(s) 403
BccI CCATC 3 cut(s) 248, 455, 535
BciVI GTATCC 1 cut(s) 467
BclI TGATCA 1 cut(s) 364
BfuI GTATCC 1 cut(s) 467
BisI GCNGC 1 cut(s) 421
BlsI GCNGC 1 cut(s) 422
BplI GAGNNNNNCTC 2 cut(s) 390, 422
BsaAI YACGTR 1 cut(s) 505
BsaJI CCNNGG 1 cut(s) 572
BsaWI WCCGGW 1 cut(s) 182
Bse1I ACTGG 1 cut(s) 139
Bse3DI GCAATG 1 cut(s) 146
BseDI CCNNGG 1 cut(s) 572
BseGI GGATG 1 cut(s) 546
BseMI GCAATG 1 cut(s) 146
BseMII CTCAG 1 cut(s) 284
BseNI ACTGG 1 cut(s) 139
BseRI GAGGAG 3 cut(s) 131, 480, 483
Bsh1236I CGCG 2 cut(s) 423, 425
BshFI GGCC 2 cut(s) 138, 311
BsiHKAI GWGCWC 1 cut(s) 403
BsiSI CCGG 1 cut(s) 183
BslFI GGGAC 1 cut(s) 342
BsmFI GGGAC 1 cut(s) 342
BsmI GAATGC 1 cut(s) 579
BsnI GGCC 2 cut(s) 138, 311
Bsp1286I GDGCHC 1 cut(s) 403
Bsp143I GATC 3 cut(s) 88, 117, 364
Bsp19I CCATGG 1 cut(s) 572
BspACI CCGC 3 cut(s) 396, 421, 440
BspANI GGCC 2 cut(s) 138, 311
BspCNI CTCAG 1 cut(s) 285
BspFNI CGCG 2 cut(s) 423, 425
BspPI GGATC 2 cut(s) 96, 112
BsrDI GCAATG 1 cut(s) 146
BsrI ACTGG 1 cut(s) 139
BssECI CCNNGG 1 cut(s) 572
BssMI GATC 3 cut(s) 88, 117, 364
BssT1I CCWWGG 1 cut(s) 572
Bst4CI ACNGT 3 cut(s) 451, 479, 594
BstBAI YACGTR 1 cut(s) 505
BstDEI CTNAG 1 cut(s) 293
BstDSI CCRYGG 1 cut(s) 572
BstF5I GGATG 1 cut(s) 546
BstFNI CGCG 2 cut(s) 423, 425
BstHHI GCGC 1 cut(s) 425
BstKTI GATC 3 cut(s) 91, 120, 367
BstMBI GATC 3 cut(s) 88, 117, 364
BstMWI GCNNNNNNNGC 1 cut(s) 381
BstNSI RCATGY 1 cut(s) 571
BstUI CGCG 2 cut(s) 423, 425
BstX2I RGATCY 2 cut(s) 88, 117
BstXI CCANNNNNNTGG 1 cut(s) 254
BstYI RGATCY 2 cut(s) 88, 117
BsuI GTATCC 1 cut(s) 467
BsuRI GGCC 2 cut(s) 138, 311
BtgI CCRYGG 1 cut(s) 572
BtsCI GGATG 1 cut(s) 546
CaiI CAGNNNCTG 1 cut(s) 598
CfoI GCGC 1 cut(s) 425
CviAII CATG 7 cut(s) 85, 96, 241, 274, 568, 573, 626
CviJI RGCY 6 cut(s) 138, 311, 360, 375, 401, 510
CviKI_1 RGCY 6 cut(s) 138, 311, 360, 375, 401, 510
DdeI CTNAG 1 cut(s) 293
DpnI GATC 3 cut(s) 90, 119, 366
DpnII GATC 3 cut(s) 88, 117, 364
Ecl136II GAGCTC 1 cut(s) 401
Eco130I CCWWGG 1 cut(s) 572
Eco24I GRGCYC 1 cut(s) 403
Eco53kI GAGCTC 1 cut(s) 401
Eco57I CTGAAG 1 cut(s) 144
EcoICRI GAGCTC 1 cut(s) 401
EcoRI GAATTC 2 cut(s) 189, 333
EcoT14I CCWWGG 1 cut(s) 572
EcoT38I GRGCYC 1 cut(s) 403
ErhI CCWWGG 1 cut(s) 572
FaeI CATG 7 cut(s) 88, 99, 244, 277, 571, 576, 629
FalI AAGNNNNNCTT 2 cut(s) 178, 210
FaqI GGGAC 1 cut(s) 342
FatI CATG 7 cut(s) 84, 95, 240, 273, 567, 572, 625
FbaI TGATCA 1 cut(s) 364
Fnu4HI GCNGC 1 cut(s) 421
FokI GGATG 1 cut(s) 553
FriOI GRGCYC 1 cut(s) 403
Fsp4HI GCNGC 1 cut(s) 421
GlaI GCGC 1 cut(s) 424
GluI GCNGC 1 cut(s) 421
HaeIII GGCC 2 cut(s) 138, 311
HapII CCGG 1 cut(s) 183
HhaI GCGC 1 cut(s) 425
Hin1II CATG 7 cut(s) 88, 99, 244, 277, 571, 576, 629
Hin6I GCGC 1 cut(s) 423
HinP1I GCGC 1 cut(s) 423
HinfI GANTC 5 cut(s) 64, 72, 224, 295, 522
HpaII CCGG 1 cut(s) 183
HphI GGTGA 3 cut(s) 172, 269, 445
Hpy166II GTNNAC 2 cut(s) 482, 565
Hpy188I TCNGA 3 cut(s) 7, 16, 294
Hpy188III TCNNGA 2 cut(s) 230, 338
Hpy8I GTNNAC 2 cut(s) 482, 565
HpyAV CCTTC 1 cut(s) 204
HpyCH4III ACNGT 3 cut(s) 451, 479, 594
HpyCH4IV ACGT 1 cut(s) 504
HpyCH4V TGCA 4 cut(s) 23, 99, 151, 355
HpyF10VI GCNNNNNNNGC 1 cut(s) 381
HpyF3I CTNAG 1 cut(s) 293
HpySE526I ACGT 1 cut(s) 504
Hsp92II CATG 7 cut(s) 88, 99, 244, 277, 571, 576, 629
HspAI GCGC 1 cut(s) 423
Ksp22I TGATCA 1 cut(s) 364
Kzo9I GATC 3 cut(s) 88, 117, 364
LmnI GCTCC 3 cut(s) 398, 406, 576
LpnPI CCDG 7 cut(s) 53, 120, 135, 196, 201, 351, 545
MaeII ACGT 1 cut(s) 504
MaeIII GTNAC 3 cut(s) 31, 153, 296
MalI GATC 3 cut(s) 90, 119, 366
MboI GATC 3 cut(s) 88, 117, 364
MboII GAAGA 5 cut(s) 137, 198, 370, 517, 575
MflI RGATCY 2 cut(s) 88, 117
MhlI GDGCHC 1 cut(s) 403
MluCI AATT 8 cut(s) 160, 189, 261, 280, 319, 333, 415, 630
MlyI GAGTC 1 cut(s) 304
MmeI TCCRAC 1 cut(s) 499
MnlI CCTC 6 cut(s) 149, 152, 276, 458, 461, 464
MroXI GAANNNNTTC 1 cut(s) 193
MseI TTAA 2 cut(s) 302, 615
MspI CCGG 1 cut(s) 183
Mva1269I GAATGC 1 cut(s) 579
MvnI CGCG 2 cut(s) 423, 425
MwoI GCNNNNNNNGC 1 cut(s) 381
NcoI CCATGG 1 cut(s) 572
NdeII GATC 3 cut(s) 88, 117, 364
NlaIII CATG 7 cut(s) 88, 99, 244, 277, 571, 576, 629
NmuCI GTSAC 2 cut(s) 153, 296
NspI RCATGY 1 cut(s) 571
PctI GAATGC 1 cut(s) 579
PdmI GAANNNNTTC 1 cut(s) 193
PfeI GAWTC 4 cut(s) 64, 72, 224, 522
PkrI GCNGC 1 cut(s) 422
PleI GAGTC 1 cut(s) 303
PpsI GAGTC 1 cut(s) 303
Ppu21I YACGTR 1 cut(s) 505
Psp124BI GAGCTC 1 cut(s) 403
PstNI CAGNNNCTG 1 cut(s) 598
PsuI RGATCY 2 cut(s) 88, 117
SacI GAGCTC 1 cut(s) 403
SaqAI TTAA 2 cut(s) 302, 615
SatI GCNGC 1 cut(s) 421
Sau3AI GATC 3 cut(s) 88, 117, 364
SchI GAGTC 1 cut(s) 304
SduI GDGCHC 1 cut(s) 403
SetI ASST 4 cut(s) 377, 403, 507, 512
Sse9I AATT 8 cut(s) 160, 189, 261, 280, 319, 333, 415, 630
SsiI CCGC 3 cut(s) 396, 421, 440
SstI GAGCTC 1 cut(s) 403
StyI CCWWGG 1 cut(s) 572
TaaI ACNGT 3 cut(s) 451, 479, 594
TaiI ACGT 1 cut(s) 507
TaqI TCGA 3 cut(s) 167, 231, 371
TasI AATT 8 cut(s) 160, 189, 261, 280, 319, 333, 415, 630
TauI GCSGC 1 cut(s) 423
TfiI GAWTC 4 cut(s) 64, 72, 224, 522
Tru1I TTAA 2 cut(s) 302, 615
Tru9I TTAA 2 cut(s) 302, 615
TseFI GTSAC 2 cut(s) 153, 296
Tsp45I GTSAC 2 cut(s) 153, 296
TspDTI ATGAA 2 cut(s) 84, 257
XapI RAATTY 4 cut(s) 189, 261, 280, 333
XceI RCATGY 1 cut(s) 571
XmnI GAANNNNTTC 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.