pycom15g10840

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000281
Physical Location & Seq
Forward (+)
7278940 .. 7282250
3311 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g10840.1

Sequence Viewer

Length: 882 bp
ATGGTGATGATATCGGTAGTGGTGATAATAGTGTACAAGTCTTTGGGTGGTAAGTTAAATCTTCCCCTGCTCAATTTAAAGCATCTTAGCTACTTGGACCTACACAACAATGATTTTGAAGGCATAGAAATTCCAAGCTTCTTAGGTTCTTTGAAAAGTTTAAGATATCTCAACCTTTCGGAAGCAGGGTTTGGAGGTACAATTCCTCCTCAACTAGGAAACATCTTGAGTCTTCGCGCTCTTGGCCTGTTTGATAATGATCTTGTAGTTGAGAACCTTGAATGGATTTCTGGCCTCTCTCTTTTGCAACACTTGAACATTGCTGCTATAGATCTTAGCAAAGTATCACATTGGTTGCAGGCTGACCAGCCTCATCTGCTTGCAATCACTCAACTTATCAAACAATCGTTTGGTTGGAAAATCCCTTCAAGGATTGGTGATATGAAAAGGTTAGAATCTCTCGATTTTTCGATGAACCAACTTACCGGTCAGATTTCTCCAAGCATGTCAAAGTTAACGTTTCTAAGTTACTTGAACTTGTCCGGTAACAATTTGTCAGGGAAGATTCCAGTAAGTACACAGCTTCAGAGCTTTGATCCGTTCAGTTTCCTTGGAGATAAACTTTGTGGACCTCCACTGGAGGAGTGCAGCACAAACCATGTTGAAGGTCCAGGTTCATCAGGGTTTGCATTTGGTTTTTGGAGTATTCTTGGCTTCTTATTGTTGAACATGCCATGGAGCACAAGGTTTTTGAGGTTCCAAAATAACATTGTAAACAAGCTTTATGCCATAATTCGAGAGAGCTATAAACCAACTTGGCTACGCCCATGTTTGCGAAGCTTTATGCTATTATTGTTGAATTTTCTTATTTATTGGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

294

Amino Acids

32.93

Weight (kDa)

8.39

Isoelectric Point (pI)

43.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_4 PF12799 149 - 190 2.5e-06 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 237
AclI AACGTT 1 cut(s) 518
AclWI GGATC 1 cut(s) 590
AcsI RAATTY 2 cut(s) 129, 859
AcuI CTGAAG 1 cut(s) 569
AfaI GTAC 3 cut(s) 35, 199, 577
AfiI CCNNNNNNNGG 1 cut(s) 215
AgeI ACCGGT 1 cut(s) 485
AgsI TTSAA 9 cut(s) 119, 154, 281, 316, 429, 535, 665, 727, 859
AjnI CCWGG 1 cut(s) 670
AjuI GAANNNNNNNTTGG 2 cut(s) 174, 206
AluBI AGCT 7 cut(s) 90, 138, 583, 591, 781, 804, 840
AluI AGCT 7 cut(s) 90, 138, 583, 591, 781, 804, 840
Alw21I GWGCWC 1 cut(s) 743
AlwI GGATC 1 cut(s) 590
AoxI GGCC 2 cut(s) 244, 292
ApeKI GCWGC 2 cut(s) 323, 648
ApoI RAATTY 2 cut(s) 129, 859
AsiGI ACCGGT 1 cut(s) 485
AspLEI GCGC 1 cut(s) 239
AspS9I GGNCC 3 cut(s) 97, 629, 668
AsuHPI GGTGA 3 cut(s) 16, 34, 449
AvaII GGWCC 3 cut(s) 97, 629, 668
BbsI GAAGAC 1 cut(s) 224
Bbv12I GWGCWC 1 cut(s) 743
BbvI GCAGC 2 cut(s) 310, 660
BciT130I CCWGG 1 cut(s) 672
BfaI CTAG 1 cut(s) 215
BfmI CTRYAG 1 cut(s) 327
BglII AGATCT 1 cut(s) 331
BisI GCNGC 2 cut(s) 324, 649
BlsI GCNGC 2 cut(s) 325, 650
Bme1390I CCNGG 1 cut(s) 672
Bme18I GGWCC 3 cut(s) 97, 629, 668
BmgT120I GGNCC 3 cut(s) 97, 629, 668
BmiI GGNNCC 1 cut(s) 758
BmrFI CCNGG 1 cut(s) 672
BmsI GCATC 1 cut(s) 91
BpiI GAAGAC 1 cut(s) 224
BpmI CTGGAG 1 cut(s) 659
BpuEI CTTGAG 1 cut(s) 247
BsaBI GATNNNNATC 1 cut(s) 258
BsaJI CCNNGG 2 cut(s) 610, 734
BsaWI WCCGGW 2 cut(s) 485, 542
BsaXI ACNNNNNCTCC 2 cut(s) 190, 220
Bsc4I CCNNNNNNNGG 1 cut(s) 215
Bse118I RCCGGY 1 cut(s) 485
Bse1I ACTGG 2 cut(s) 569, 642
Bse3DI GCAATG 1 cut(s) 318
Bse8I GATNNNNATC 1 cut(s) 258
BseBI CCWGG 1 cut(s) 672
BseDI CCNNGG 2 cut(s) 610, 734
BseJI GATNNNNATC 1 cut(s) 258
BseLI CCNNNNNNNGG 1 cut(s) 215
BseMI GCAATG 1 cut(s) 318
BseNI ACTGG 2 cut(s) 569, 642
BseRI GAGGAG 2 cut(s) 198, 656
BseXI GCAGC 2 cut(s) 310, 660
BsgI GTGCAG 1 cut(s) 667
Bsh1236I CGCG 1 cut(s) 237
BshFI GGCC 2 cut(s) 246, 294
BshTI ACCGGT 1 cut(s) 485
BsiHKAI GWGCWC 1 cut(s) 743
BsiSI CCGG 2 cut(s) 486, 543
BslI CCNNNNNNNGG 1 cut(s) 215
BsnI GGCC 2 cut(s) 246, 294
Bsp1286I GDGCHC 1 cut(s) 743
Bsp1407I TGTACA 1 cut(s) 33
Bsp143I GATC 3 cut(s) 259, 331, 595
Bsp19I CCATGG 1 cut(s) 734
BspANI GGCC 2 cut(s) 246, 294
BspFNI CGCG 1 cut(s) 237
BspLI GGNNCC 1 cut(s) 758
BspPI GGATC 1 cut(s) 590
BsrDI GCAATG 1 cut(s) 318
BsrFI RCCGGY 1 cut(s) 485
BsrGI TGTACA 1 cut(s) 33
BsrI ACTGG 2 cut(s) 569, 642
BssAI RCCGGY 1 cut(s) 485
BssECI CCNNGG 2 cut(s) 610, 734
BssMI GATC 3 cut(s) 259, 331, 595
BssT1I CCWWGG 2 cut(s) 610, 734
Bst2UI CCWGG 1 cut(s) 672
BstAUI TGTACA 1 cut(s) 33
BstC8I GCNNGC 2 cut(s) 360, 381
BstDEI CTNAG 4 cut(s) 86, 142, 335, 524
BstDSI CCRYGG 1 cut(s) 734
BstENI CCTNNNNNAGG 1 cut(s) 213
BstFNI CGCG 1 cut(s) 237
BstHHI GCGC 1 cut(s) 239
BstKTI GATC 3 cut(s) 262, 334, 598
BstMBI GATC 3 cut(s) 259, 331, 595
BstMWI GCNNNNNNNGC 2 cut(s) 243, 376
BstNI CCWGG 1 cut(s) 672
BstNSI RCATGY 2 cut(s) 508, 733
BstSCI CCNGG 1 cut(s) 670
BstSFI CTRYAG 1 cut(s) 327
BstUI CGCG 1 cut(s) 237
BstV1I GCAGC 2 cut(s) 310, 660
BstV2I GAAGAC 1 cut(s) 224
BstX2I RGATCY 1 cut(s) 331
BstYI RGATCY 1 cut(s) 331
BsuRI GGCC 2 cut(s) 246, 294
BtgI CCRYGG 1 cut(s) 734
BtsIMutI CAGTG 1 cut(s) 635
Cac8I GCNNGC 2 cut(s) 360, 381
CfoI GCGC 1 cut(s) 239
Cfr10I RCCGGY 1 cut(s) 485
Cfr13I GGNCC 3 cut(s) 97, 629, 668
Csp6I GTAC 3 cut(s) 34, 198, 576
CspAI ACCGGT 1 cut(s) 485
CviAII CATG 5 cut(s) 505, 659, 730, 735, 828
CviQI GTAC 3 cut(s) 34, 198, 576
DdeI CTNAG 4 cut(s) 86, 142, 335, 524
DpnI GATC 3 cut(s) 261, 333, 597
DpnII GATC 3 cut(s) 259, 331, 595
DraI TTTAAA 1 cut(s) 78
Eco130I CCWWGG 2 cut(s) 610, 734
Eco32I GATATC 2 cut(s) 12, 167
Eco47I GGWCC 3 cut(s) 97, 629, 668
Eco57I CTGAAG 1 cut(s) 569
EcoNI CCTNNNNNAGG 1 cut(s) 213
EcoRII CCWGG 1 cut(s) 670
EcoRV GATATC 2 cut(s) 12, 167
EcoT14I CCWWGG 2 cut(s) 610, 734
ErhI CCWWGG 2 cut(s) 610, 734
FaeI CATG 5 cut(s) 508, 662, 733, 738, 831
FatI CATG 5 cut(s) 504, 658, 729, 734, 827
Fnu4HI GCNGC 2 cut(s) 324, 649
Fsp4HI GCNGC 2 cut(s) 324, 649
FspBI CTAG 1 cut(s) 215
GlaI GCGC 1 cut(s) 238
GluI GCNGC 2 cut(s) 324, 649
GsuI CTGGAG 1 cut(s) 659
HaeIII GGCC 2 cut(s) 246, 294
HapII CCGG 2 cut(s) 486, 543
HhaI GCGC 1 cut(s) 239
Hin1II CATG 5 cut(s) 508, 662, 733, 738, 831
Hin6I GCGC 1 cut(s) 237
HinP1I GCGC 1 cut(s) 237
HincII GTYRAC 1 cut(s) 516
HindII GTYRAC 1 cut(s) 516
HindIII AAGCTT 3 cut(s) 136, 779, 838
HinfI GANTC 3 cut(s) 229, 455, 565
HpaI GTTAAC 1 cut(s) 516
HpaII CCGG 2 cut(s) 486, 543
HphI GGTGA 3 cut(s) 16, 34, 449
Hpy166II GTNNAC 5 cut(s) 34, 516, 578, 629, 775
Hpy188I TCNGA 3 cut(s) 181, 492, 588
Hpy188III TCNNGA 3 cut(s) 226, 461, 797
Hpy8I GTNNAC 5 cut(s) 34, 516, 578, 629, 775
HpyAV CCTTC 3 cut(s) 113, 435, 659
HpyCH4IV ACGT 1 cut(s) 518
HpyCH4V TGCA 5 cut(s) 307, 358, 383, 648, 689
HpyF10VI GCNNNNNNNGC 2 cut(s) 243, 376
HpyF3I CTNAG 4 cut(s) 86, 142, 335, 524
HpySE526I ACGT 1 cut(s) 518
Hsp92II CATG 5 cut(s) 508, 662, 733, 738, 831
HspAI GCGC 1 cut(s) 237
KspAI GTTAAC 1 cut(s) 516
Kzo9I GATC 3 cut(s) 259, 331, 595
LmnI GCTCC 1 cut(s) 738
Lsp1109I GCAGC 2 cut(s) 310, 660
LweI GCATC 1 cut(s) 91
MaeI CTAG 1 cut(s) 215
MaeII ACGT 1 cut(s) 518
MaeIII GTNAC 2 cut(s) 527, 545
MalI GATC 3 cut(s) 261, 333, 597
MboI GATC 3 cut(s) 259, 331, 595
MboII GAAGA 3 cut(s) 53, 224, 574
MflI RGATCY 1 cut(s) 331
MhlI GDGCHC 1 cut(s) 743
MluCI AATT 6 cut(s) 73, 129, 201, 550, 792, 859
MlyI GAGTC 1 cut(s) 238
MmeI TCCRAC 1 cut(s) 395
MnlI CCTC 8 cut(s) 188, 216, 219, 305, 381, 634, 642, 747
MseI TTAA 4 cut(s) 56, 77, 161, 515
MslI CAYNNNNRTG 1 cut(s) 108
MspI CCGG 2 cut(s) 486, 543
MspR9I CCNGG 1 cut(s) 672
MvaI CCWGG 1 cut(s) 672
MvnI CGCG 1 cut(s) 237
MwoI GCNNNNNNNGC 2 cut(s) 243, 376
NcoI CCATGG 1 cut(s) 734
NdeII GATC 3 cut(s) 259, 331, 595
NlaIII CATG 5 cut(s) 508, 662, 733, 738, 831
NlaIV GGNNCC 1 cut(s) 758
NspI RCATGY 2 cut(s) 508, 733
PfeI GAWTC 2 cut(s) 455, 565
PinAI ACCGGT 1 cut(s) 485
PkrI GCNGC 2 cut(s) 325, 650
PleI GAGTC 1 cut(s) 237
PpsI GAGTC 1 cut(s) 237
Psp1406I AACGTT 1 cut(s) 518
Psp6I CCWGG 1 cut(s) 670
PspGI CCWGG 1 cut(s) 670
PspN4I GGNNCC 1 cut(s) 758
PspPI GGNCC 3 cut(s) 97, 629, 668
PsuI RGATCY 1 cut(s) 331
RsaI GTAC 3 cut(s) 35, 199, 577
RsaNI GTAC 3 cut(s) 34, 198, 576
RseI CAYNNNNRTG 1 cut(s) 108
SaqAI TTAA 4 cut(s) 56, 77, 161, 515
SatI GCNGC 2 cut(s) 324, 649
Sau3AI GATC 3 cut(s) 259, 331, 595
Sau96I GGNCC 3 cut(s) 97, 629, 668
SchI GAGTC 1 cut(s) 238
ScrFI CCNGG 1 cut(s) 672
SduI GDGCHC 1 cut(s) 743
SfaNI GCATC 1 cut(s) 91
SfcI CTRYAG 1 cut(s) 327
SinI GGWCC 3 cut(s) 97, 629, 668
SmiMI CAYNNNNRTG 1 cut(s) 108
SmlI CTYRAG 1 cut(s) 226
SmoI CTYRAG 1 cut(s) 226
Sse9I AATT 6 cut(s) 73, 129, 201, 550, 792, 859
SspMI CTAG 1 cut(s) 215
StyD4I CCNGG 1 cut(s) 670
StyI CCWWGG 2 cut(s) 610, 734
TaiI ACGT 1 cut(s) 521
TaqI TCGA 3 cut(s) 462, 470, 796
TasI AATT 6 cut(s) 73, 129, 201, 550, 792, 859
TatI WGTACW 2 cut(s) 33, 575
TfiI GAWTC 2 cut(s) 455, 565
Tru1I TTAA 4 cut(s) 56, 77, 161, 515
Tru9I TTAA 4 cut(s) 56, 77, 161, 515
TscAI CASTG 1 cut(s) 642
TseI GCWGC 2 cut(s) 323, 648
TspDTI ATGAA 3 cut(s) 458, 488, 666
TspGWI ACGGA 1 cut(s) 588
TspRI CASTG 1 cut(s) 642
VpaK11BI GGWCC 3 cut(s) 97, 629, 668
XagI CCTNNNNNAGG 1 cut(s) 213
XapI RAATTY 2 cut(s) 129, 859
XceI RCATGY 2 cut(s) 508, 733
XspI CTAG 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.