Prupe.1G526400_v2.0.a1

regulation of response to stimulus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000281
Physical Location & Seq
Reverse (-)
43105026 .. 43106078
1053 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G526400.1

Sequence Viewer

Length: 963 bp
ATGCCTTGTAAACAAAATGAGAGACAGGCACTTCTAATGTTCAAGCAAGATCTTAAGGATCCTTCCAATAGGCTTTTATCTTGGGTTGGTGAGGGAGATTGTGGCAATTGGACCGGAGTTGTCTGCGACAATTTAACCGGTCATGTCCGTGAGCTGCACCTTGGAAATTATTATTCAGATGAGTATTTGAATTACAGTTTGTATCAAGACAACTCTTTGGGTGGCAAGGTAAATACTTCTCTACTAAATTTAAAGCATCTGAGCTACTTAGATCTAAGCAACAATGATTTTGGAGGAATACAGATTCCTAGCTTATTAGCTACTACGTACTGGATGAAGTTTGAGAATCTCCAATGGCTTTCTGGTCTTTCGAGTTTGCAGAACCTGGACATGAGTCGTGTAGATCTTAGCAAAGCATCTGATTGGTTTCAGGTGACAAACACACTCCCCTCCTCTATGCTGGTAGAGTTGCATATGTCCTGTTGTGAACTCAATCAAATACCAGTTGGTGTTGCAAACATGACAAGGCTTGAAGTTCTTAATCTCAGGTGGAACATCATCTGGGGTACCATACCTCAATGGTTGTACACTTGTAGCAATCTTGAGTCCCTATCCCTTTATTTGAATCTCTTGCGAGGTGAAATTTCAAGTTCCAATGGAAACTTGACAGCCATTGTCAATCTTGACTTGTCTGCTAATCAACTTGAAGGGAAAATCCCAAGCTCATTGGGAAATCTTTGTAAGTTGACGGTTCTTGATCTGTCAAGGAACTATTTCAGTGGAAGCGTATCAGAAATATTGGGAAGCTTGTCAAGGTGTAGTTCAGGTCCAATGGAGTCACTGAAGCTGTCAACAAATGATTTTTTAGGTCCACTATCCGATCAGCTAGGAAATTTCAGACATTTACGCCTCCTTGCTCTTTCGAGTAATTCAATATCATGTCCAATTCCAGTGTCCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_6 LRR_8

Protein Analysis

321

Amino Acids

35.57

Weight (kDa)

5.23

Isoelectric Point (pI)

32.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 566
AccB1I GGYRCC 1 cut(s) 566
AclWI GGATC 2 cut(s) 53, 66
AcsI RAATTY 3 cut(s) 247, 642, 892
AcuI CTGAAG 1 cut(s) 863
AfaI GTAC 3 cut(s) 329, 568, 587
AflII CTTAAG 1 cut(s) 53
AgeI ACCGGT 1 cut(s) 137
AgsI TTSAA 7 cut(s) 43, 190, 533, 625, 648, 707, 933
AjnI CCWGG 1 cut(s) 384
AluBI AGCT 8 cut(s) 154, 264, 312, 320, 723, 807, 847, 886
AluI AGCT 8 cut(s) 154, 264, 312, 320, 723, 807, 847, 886
Alw26I GTCTC 1 cut(s) 16
AlwI GGATC 2 cut(s) 53, 66
AlwNI CAGNNNCTG 1 cut(s) 385
ApeKI GCWGC 1 cut(s) 154
ApoI RAATTY 3 cut(s) 247, 642, 892
AsiGI ACCGGT 1 cut(s) 137
Asp700I GAANNNNTTC 1 cut(s) 773
Asp718I GGTACC 1 cut(s) 566
AspS9I GGNCC 3 cut(s) 111, 827, 869
AsuHPI GGTGA 3 cut(s) 101, 445, 650
AvaII GGWCC 3 cut(s) 111, 827, 869
BamHI GGATCC 1 cut(s) 58
BanI GGYRCC 1 cut(s) 566
BbvI GCAGC 1 cut(s) 141
BciT130I CCWGG 1 cut(s) 386
BcoDI GTCTC 1 cut(s) 16
BfaI CTAG 2 cut(s) 309, 887
BfrI CTTAAG 1 cut(s) 53
BglII AGATCT 3 cut(s) 49, 271, 403
BisI GCNGC 1 cut(s) 155
BlsI GCNGC 1 cut(s) 156
Bme1390I CCNGG 1 cut(s) 386
Bme18I GGWCC 3 cut(s) 111, 827, 869
BmgT120I GGNCC 3 cut(s) 111, 827, 869
BmiI GGNNCC 2 cut(s) 60, 568
BmrFI CCNGG 1 cut(s) 386
BmsI GCATC 2 cut(s) 265, 425
BoxI GACNNNNGTC 1 cut(s) 393
BpuEI CTTGAG 1 cut(s) 623
BsaAI YACGTR 1 cut(s) 327
BsaJI CCNNGG 1 cut(s) 160
BsaWI WCCGGW 2 cut(s) 113, 137
Bse118I RCCGGY 1 cut(s) 137
Bse1I ACTGG 3 cut(s) 335, 503, 950
BseBI CCWGG 1 cut(s) 386
BseDI CCNNGG 1 cut(s) 160
BseGI GGATG 1 cut(s) 339
BseMII CTCAG 2 cut(s) 251, 559
BseNI ACTGG 3 cut(s) 335, 503, 950
BseRI GAGGAG 1 cut(s) 442
BseXI GCAGC 1 cut(s) 141
BsgI GTGCAG 1 cut(s) 140
BshNI GGYRCC 1 cut(s) 566
BshTI ACCGGT 1 cut(s) 137
BsiSI CCGG 2 cut(s) 114, 138
BslFI GGGAC 1 cut(s) 592
BsmAI GTCTC 1 cut(s) 16
BsmFI GGGAC 1 cut(s) 592
Bsp1407I TGTACA 1 cut(s) 585
Bsp143I GATC 6 cut(s) 49, 58, 271, 403, 757, 880
BspCNI CTCAG 2 cut(s) 252, 558
BspLI GGNNCC 2 cut(s) 60, 568
BspPI GGATC 2 cut(s) 53, 66
BspT107I GGYRCC 1 cut(s) 566
BspTI CTTAAG 1 cut(s) 53
BsrFI RCCGGY 1 cut(s) 137
BsrGI TGTACA 1 cut(s) 585
BsrI ACTGG 3 cut(s) 335, 503, 950
BssAI RCCGGY 1 cut(s) 137
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 6 cut(s) 49, 58, 271, 403, 757, 880
BssT1I CCWWGG 1 cut(s) 160
Bst2UI CCWGG 1 cut(s) 386
Bst4CI ACNGT 2 cut(s) 197, 751
BstAFI CTTAAG 1 cut(s) 53
BstAUI TGTACA 1 cut(s) 585
BstBAI YACGTR 1 cut(s) 327
BstDEI CTNAG 5 cut(s) 260, 268, 275, 407, 545
BstF5I GGATG 1 cut(s) 339
BstKTI GATC 6 cut(s) 52, 61, 274, 406, 760, 883
BstMAI GTCTC 1 cut(s) 16
BstMBI GATC 6 cut(s) 49, 58, 271, 403, 757, 880
BstNI CCWGG 1 cut(s) 386
BstPAI GACNNNNGTC 1 cut(s) 393
BstSCI CCNGG 1 cut(s) 384
BstSNI TACGTA 1 cut(s) 327
BstV1I GCAGC 1 cut(s) 141
BstX2I RGATCY 4 cut(s) 49, 58, 271, 403
BstYI RGATCY 4 cut(s) 49, 58, 271, 403
BtsCI GGATG 1 cut(s) 339
BtsIMutI CAGTG 3 cut(s) 784, 839, 957
CaiI CAGNNNCTG 1 cut(s) 385
Cfr10I RCCGGY 1 cut(s) 137
Cfr13I GGNCC 3 cut(s) 111, 827, 869
Csp6I GTAC 3 cut(s) 328, 567, 586
CspAI ACCGGT 1 cut(s) 137
CviAII CATG 4 cut(s) 143, 391, 520, 939
CviQI GTAC 3 cut(s) 328, 567, 586
DdeI CTNAG 5 cut(s) 260, 268, 275, 407, 545
DpnI GATC 6 cut(s) 51, 60, 273, 405, 759, 882
DpnII GATC 6 cut(s) 49, 58, 271, 403, 757, 880
DraI TTTAAA 1 cut(s) 252
Eco105I TACGTA 1 cut(s) 327
Eco130I CCWWGG 1 cut(s) 160
Eco47I GGWCC 3 cut(s) 111, 827, 869
Eco57I CTGAAG 1 cut(s) 863
EcoRII CCWGG 1 cut(s) 384
EcoT14I CCWWGG 1 cut(s) 160
ErhI CCWWGG 1 cut(s) 160
FaeI CATG 4 cut(s) 146, 394, 523, 942
FaiI YATR 8 cut(s) 144, 392, 458, 474, 476, 521, 572, 940
FaqI GGGAC 1 cut(s) 592
FatI CATG 4 cut(s) 142, 390, 519, 938
FauNDI CATATG 1 cut(s) 474
Fnu4HI GCNGC 1 cut(s) 155
FokI GGATG 1 cut(s) 346
Fsp4HI GCNGC 1 cut(s) 155
FspBI CTAG 2 cut(s) 309, 887
GluI GCNGC 1 cut(s) 155
HapII CCGG 2 cut(s) 114, 138
Hin1II CATG 4 cut(s) 146, 394, 523, 942
HincII GTYRAC 2 cut(s) 747, 852
HindII GTYRAC 2 cut(s) 747, 852
HindIII AAGCTT 1 cut(s) 805
HinfI GANTC 6 cut(s) 304, 346, 394, 605, 625, 836
HpaII CCGG 2 cut(s) 114, 138
HphI GGTGA 3 cut(s) 101, 445, 650
Hpy166II GTNNAC 6 cut(s) 11, 488, 588, 747, 852, 872
Hpy188I TCNGA 6 cut(s) 178, 261, 421, 793, 880, 899
Hpy188III TCNNGA 5 cut(s) 206, 602, 683, 755, 960
Hpy8I GTNNAC 6 cut(s) 11, 488, 588, 747, 852, 872
HpyAV CCTTC 2 cut(s) 72, 701
HpyCH4III ACNGT 2 cut(s) 197, 751
HpyCH4IV ACGT 1 cut(s) 326
HpyCH4V TGCA 4 cut(s) 157, 379, 472, 515
HpyF3I CTNAG 5 cut(s) 260, 268, 275, 407, 545
HpySE526I ACGT 1 cut(s) 326
Hsp92II CATG 4 cut(s) 146, 394, 523, 942
KpnI GGTACC 1 cut(s) 570
Kzo9I GATC 6 cut(s) 49, 58, 271, 403, 757, 880
Lsp1109I GCAGC 1 cut(s) 141
LweI GCATC 2 cut(s) 265, 425
MaeI CTAG 2 cut(s) 309, 887
MaeII ACGT 1 cut(s) 326
MaeIII GTNAC 2 cut(s) 433, 837
MalI GATC 6 cut(s) 51, 60, 273, 405, 759, 882
MboI GATC 6 cut(s) 49, 58, 271, 403, 757, 880
MfeI CAATTG 1 cut(s) 106
MflI RGATCY 4 cut(s) 49, 58, 271, 403
MluCI AATT 9 cut(s) 106, 130, 166, 190, 247, 642, 892, 928, 945
MlyI GAGTC 3 cut(s) 403, 614, 845
MnlI CCTC 7 cut(s) 85, 287, 460, 463, 585, 629, 920
MroXI GAANNNNTTC 1 cut(s) 773
MseI TTAA 4 cut(s) 54, 134, 251, 540
MslI CAYNNNNRTG 1 cut(s) 147
MspCI CTTAAG 1 cut(s) 53
MspI CCGG 2 cut(s) 114, 138
MspR9I CCNGG 1 cut(s) 386
MunI CAATTG 1 cut(s) 106
MvaI CCWGG 1 cut(s) 386
NdeI CATATG 1 cut(s) 474
NdeII GATC 6 cut(s) 49, 58, 271, 403, 757, 880
NlaIII CATG 4 cut(s) 146, 394, 523, 942
NlaIV GGNNCC 2 cut(s) 60, 568
NmuCI GTSAC 2 cut(s) 433, 837
PdmI GAANNNNTTC 1 cut(s) 773
PfeI GAWTC 3 cut(s) 304, 346, 625
PinAI ACCGGT 1 cut(s) 137
PkrI GCNGC 1 cut(s) 156
PleI GAGTC 3 cut(s) 402, 613, 844
PpsI GAGTC 3 cut(s) 402, 613, 844
Ppu21I YACGTR 1 cut(s) 327
PshAI GACNNNNGTC 1 cut(s) 393
Psp6I CCWGG 1 cut(s) 384
PspGI CCWGG 1 cut(s) 384
PspN4I GGNNCC 2 cut(s) 60, 568
PspPI GGNCC 3 cut(s) 111, 827, 869
PstNI CAGNNNCTG 1 cut(s) 385
PsuI RGATCY 4 cut(s) 49, 58, 271, 403
RsaI GTAC 3 cut(s) 329, 568, 587
RsaNI GTAC 3 cut(s) 328, 567, 586
RseI CAYNNNNRTG 1 cut(s) 147
SaqAI TTAA 4 cut(s) 54, 134, 251, 540
SatI GCNGC 1 cut(s) 155
Sau3AI GATC 6 cut(s) 49, 58, 271, 403, 757, 880
Sau96I GGNCC 3 cut(s) 111, 827, 869
SchI GAGTC 3 cut(s) 403, 614, 845
ScrFI CCNGG 1 cut(s) 386
SfaNI GCATC 2 cut(s) 265, 425
SinI GGWCC 3 cut(s) 111, 827, 869
SmiMI CAYNNNNRTG 1 cut(s) 147
SmlI CTYRAG 2 cut(s) 53, 602
SmoI CTYRAG 2 cut(s) 53, 602
SnaBI TACGTA 1 cut(s) 327
Sse9I AATT 9 cut(s) 106, 130, 166, 190, 247, 642, 892, 928, 945
SspI AATATT 1 cut(s) 798
SspMI CTAG 2 cut(s) 309, 887
StyD4I CCNGG 1 cut(s) 384
StyI CCWWGG 1 cut(s) 160
TaaI ACNGT 2 cut(s) 197, 751
TaiI ACGT 1 cut(s) 329
TaqI TCGA 2 cut(s) 371, 923
TasI AATT 9 cut(s) 106, 130, 166, 190, 247, 642, 892, 928, 945
TatI WGTACW 1 cut(s) 585
TfiI GAWTC 3 cut(s) 304, 346, 625
Tru1I TTAA 4 cut(s) 54, 134, 251, 540
Tru9I TTAA 4 cut(s) 54, 134, 251, 540
TscAI CASTG 3 cut(s) 784, 846, 957
TseFI GTSAC 2 cut(s) 433, 837
TseI GCWGC 1 cut(s) 154
Tsp45I GTSAC 2 cut(s) 433, 837
TspDTI ATGAA 1 cut(s) 350
TspGWI ACGGA 1 cut(s) 137
TspRI CASTG 3 cut(s) 784, 846, 957
Vha464I CTTAAG 1 cut(s) 53
VpaK11BI GGWCC 3 cut(s) 111, 827, 869
XapI RAATTY 3 cut(s) 247, 642, 892
XcmI CCANNNNNNNNNTGG 1 cut(s) 359
XmnI GAANNNNTTC 1 cut(s) 773
XspI CTAG 2 cut(s) 309, 887
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.