FvH4_7g26610

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000281
Physical Location & Seq
Forward (+)
20059917 .. 20061579
1663 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g26610.t1

Sequence Viewer

Length: 1491 bp
ATGATAAAAGTCGCACAAATATGCAACTATCATCTGGGGCCTGAATTTCCTACGTGGATTCAGAAACCACCATTCCGTTTAAGTGAACTAAGCTTATCTGGCACAGGACTTTCGGATACCCTTCCGAATTGCGTTTGGAACTCATCTATATTTTATCTTAATCTTTCTCACAATCAACTGCATGGGGAGCTTCCAAGTTTAGCTGCAGAGATGTTTTCGACAATTGACCTAAGTTCTAACCAGTTCAACGGTTCATTGCCTCTGGTTTCTTCCAACGTAGGCCTGCTAGATCTTTCCAATTCATCATTTTCTGGATCTGTCAGCCACTTCTTTTGCGATACAAGAGATGGGCCAAAACTACTTGGACTTCTTCATCTCGGGAACAATCATCTTGTTGGAAGAATTCCTGATTGTTGGATGAATTGGAAAAACCTGAAGTATGTGAATTTAGAAAGTAACAGTTTCACTGGGAATATTCCAAGCTCCATGGGACACTTGTTAAGCCTCGTATCACTTAACCTGCGCAATAATCAGCTCTCTGGGGATGAGTTGCCTTCATCAATGCAGAATTGGAGTAAATTGGAGGTTGTTGACCTTGGTCTTAATAAGTTGGAGGGAAGCTTACCACCATGGATAGGAAACGGCCTTTCAAGCTTGGTGGTTCTTAGCCTTCGTTCAAATAAGTTTCAGGGAGTCATTCCGCATGAACTTTGTAATCTCAAATATCTTCAAATTTTGGACATTGCAAATAACAATCTCTCTGGAACAATACCAATATGCTTCAACAGTTTTAGTTCCATGAAAACCTTGTCCAAATCAGATAGGTTTACTTCTTTTAACATTGAATATGAGTTCAGAGCGACAACATACGAAGATAATGCGGTCTTGGTGACAAAAGGGAAGGAAATGCGATATAGCAAGATTCTTCCATCTGTAAAAAGCATGGACATTTCAGCCAACATTATATCTGGGGAGATACCTGAGGAACTGACCAGCCTCATTGCCTTGCAAACTTTGAACTTATCAAACAATTGTTTGACCGGAAGAATCCCTTCAAAGATTGGTAATTTGAGTGCGTTAGAAACTCTTGATTTGTCTAAGAACCATCTTTTTGGTGTAATTCCTGCAAGCATGACAAGGATGAATTTTCTGAATCACTTGAATGTGTCTTACAACAATCTGACGGGACGGATTCCAGAAGGCACTCAGCTTCAGAGCTTTAATCAGTCCGGCTTTGTTGGCAATGAACTCTGCGGACTTCCACTCATCAAGAATTGCAGCAAGGTGATACCATTACCACCAACAGTTGAGCAAGAGAGAGGATATGATTTTCTTGAAGACAAATGGTTCTATTTGAGCTTGGGATTGGGATTCGCAGTTGGTTTCTGGACTATACTTGGTTCCTTGCTGGTAAACTTGCCATGGAGCTTTGCCTTTTCACGGTACCTCAATAGCATTGTGCTTAAACTTTATGCTGTAATTAATTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

497

Amino Acids

54.93

Weight (kDa)

6.37

Isoelectric Point (pI)

28.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 143 - 252 2.7e-08 Leucine-rich repeat region
LRR_8 PF13855 193 - 253 1.8e-06 Leucine rich repeat
LRR_8 PF13855 310 - 370 2.5e-07 Leucine rich repeat
LRR_14 PF23598 328 - 401 1.5e-07 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 524
Acc36I ACCTGC 1 cut(s) 528
Acc65I GGTACC 1 cut(s) 1443
AccB1I GGYRCC 1 cut(s) 1443
AciI CCGC 3 cut(s) 701, 881, 1254
AclWI GGATC 1 cut(s) 322
AcsI RAATTY 5 cut(s) 44, 402, 445, 732, 1144
AcuI CTGAAG 2 cut(s) 455, 1196
AfaI GTAC 1 cut(s) 1445
AfiI CCNNNNNNNGG 2 cut(s) 635, 1440
AlwI GGATC 1 cut(s) 322
Ama87I CYCGRG 1 cut(s) 377
AoxI GGCC 4 cut(s) 38, 280, 350, 643
ApeKI GCWGC 2 cut(s) 203, 1278
ApoI RAATTY 5 cut(s) 44, 402, 445, 732, 1144
AseI ATTAAT 1 cut(s) 1482
Asp700I GAANNNNTTC 1 cut(s) 1051
Asp718I GGTACC 1 cut(s) 1443
AspLEI GCGC 1 cut(s) 525
AspS9I GGNCC 2 cut(s) 38, 350
AsuHPI GGTGA 2 cut(s) 901, 1297
AvaI CYCGRG 1 cut(s) 377
AxyI CCTNAGG 1 cut(s) 981
BanI GGYRCC 1 cut(s) 1443
BbsI GAAGAC 1 cut(s) 1344
BbvI GCAGC 2 cut(s) 190, 1290
BccI CCATC 3 cut(s) 341, 937, 1113
BceAI ACGGC 1 cut(s) 658
BcgI CGANNNNNNTGC 2 cut(s) 860, 894
BciVI GTATCC 1 cut(s) 109
BfaI CTAG 1 cut(s) 287
BfmI CTRYAG 1 cut(s) 204
BfuAI ACCTGC 1 cut(s) 528
BfuI GTATCC 1 cut(s) 109
BglII AGATCT 1 cut(s) 289
BisI GCNGC 2 cut(s) 204, 1279
BlsI GCNGC 2 cut(s) 205, 1280
BmeT110I CYCGRG 1 cut(s) 377
BmgT120I GGNCC 2 cut(s) 38, 350
BmiI GGNNCC 3 cut(s) 39, 1402, 1445
BmrI ACTGGG 1 cut(s) 477
BmuI ACTGGG 1 cut(s) 477
BoxI GACNNNNGTC 1 cut(s) 597
BpiI GAAGAC 1 cut(s) 1344
BsaAI YACGTR 1 cut(s) 54
BsaJI CCNNGG 4 cut(s) 486, 595, 629, 1421
BsaWI WCCGGW 1 cut(s) 1040
Bsc4I CCNNNNNNNGG 2 cut(s) 635, 1440
Bse1I ACTGG 2 cut(s) 241, 472
Bse21I CCTNAGG 1 cut(s) 981
Bse3DI GCAATG 4 cut(s) 254, 741, 999, 1249
BseDI CCNNGG 4 cut(s) 486, 595, 629, 1421
BseGI GGATG 3 cut(s) 423, 550, 1146
BseLI CCNNNNNNNGG 2 cut(s) 635, 1440
BseMI GCAATG 4 cut(s) 254, 741, 999, 1249
BseMII CTCAG 2 cut(s) 972, 1220
BseNI ACTGG 2 cut(s) 241, 472
BseXI GCAGC 2 cut(s) 190, 1290
BshFI GGCC 4 cut(s) 40, 282, 352, 645
BshNI GGYRCC 1 cut(s) 1443
BsiHKCI CYCGRG 1 cut(s) 377
BsiSI CCGG 2 cut(s) 1041, 1230
BslFI GGGAC 2 cut(s) 504, 1200
BslI CCNNNNNNNGG 2 cut(s) 635, 1440
BsmFI GGGAC 2 cut(s) 504, 1200
BsnI GGCC 4 cut(s) 40, 282, 352, 645
BsoBI CYCGRG 1 cut(s) 377
Bsp143I GATC 2 cut(s) 289, 314
Bsp19I CCATGG 3 cut(s) 486, 629, 1421
BspACI CCGC 3 cut(s) 701, 881, 1254
BspANI GGCC 4 cut(s) 40, 282, 352, 645
BspCNI CTCAG 2 cut(s) 973, 1219
BspLI GGNNCC 3 cut(s) 39, 1402, 1445
BspMAI CTGCAG 1 cut(s) 208
BspMI ACCTGC 1 cut(s) 528
BspPI GGATC 1 cut(s) 322
BspT107I GGYRCC 1 cut(s) 1443
BsrDI GCAATG 4 cut(s) 254, 741, 999, 1249
BsrI ACTGG 2 cut(s) 241, 472
BssECI CCNNGG 4 cut(s) 486, 595, 629, 1421
BssMI GATC 2 cut(s) 289, 314
BssT1I CCWWGG 4 cut(s) 486, 595, 629, 1421
Bst4CI ACNGT 5 cut(s) 251, 461, 788, 1306, 1443
BstBAI YACGTR 1 cut(s) 54
BstC8I GCNNGC 2 cut(s) 284, 1129
BstDEI CTNAG 6 cut(s) 89, 230, 665, 981, 1098, 1206
BstDSI CCRYGG 3 cut(s) 486, 629, 1421
BstF5I GGATG 3 cut(s) 423, 550, 1146
BstHHI GCGC 1 cut(s) 525
BstKTI GATC 2 cut(s) 292, 317
BstMBI GATC 2 cut(s) 289, 314
BstMWI GCNNNNNNNGC 4 cut(s) 99, 187, 651, 1239
BstPAI GACNNNNGTC 1 cut(s) 597
BstSFI CTRYAG 1 cut(s) 204
BstV1I GCAGC 2 cut(s) 190, 1290
BstV2I GAAGAC 1 cut(s) 1344
BstX2I RGATCY 2 cut(s) 289, 314
BstXI CCANNNNNNTGG 1 cut(s) 1112
BstYI RGATCY 2 cut(s) 289, 314
Bsu36I CCTNAGG 1 cut(s) 981
BsuI GTATCC 1 cut(s) 109
BsuRI GGCC 4 cut(s) 40, 282, 352, 645
BtgI CCRYGG 3 cut(s) 486, 629, 1421
BtsCI GGATG 3 cut(s) 423, 550, 1146
BtsIMutI CAGTG 1 cut(s) 465
BveI ACCTGC 1 cut(s) 528
Cac8I GCNNGC 2 cut(s) 284, 1129
CfoI GCGC 1 cut(s) 525
Cfr13I GGNCC 2 cut(s) 38, 350
Csp6I GTAC 1 cut(s) 1444
CspCI CAANNNNNGTGG 4 cut(s) 314, 349, 639, 674
CviAII CATG 8 cut(s) 182, 487, 630, 704, 799, 943, 1132, 1422
CviQI GTAC 1 cut(s) 1444
DdeI CTNAG 6 cut(s) 89, 230, 665, 981, 1098, 1206
DpnI GATC 2 cut(s) 291, 316
DpnII GATC 2 cut(s) 289, 314
Eco130I CCWWGG 4 cut(s) 486, 595, 629, 1421
Eco147I AGGCCT 1 cut(s) 282
Eco57I CTGAAG 2 cut(s) 455, 1196
Eco81I CCTNAGG 1 cut(s) 981
Eco88I CYCGRG 1 cut(s) 377
EcoO109I RGGNCCY 1 cut(s) 38
EcoRI GAATTC 1 cut(s) 402
EcoT14I CCWWGG 4 cut(s) 486, 595, 629, 1421
ErhI CCWWGG 4 cut(s) 486, 595, 629, 1421
FaeI CATG 8 cut(s) 185, 490, 633, 707, 802, 946, 1135, 1425
FalI AAGNNNNNCTT 2 cut(s) 1036, 1068
FaqI GGGAC 2 cut(s) 504, 1200
FatI CATG 8 cut(s) 181, 486, 629, 703, 798, 942, 1131, 1421
Fnu4HI GCNGC 2 cut(s) 204, 1279
FokI GGATG 3 cut(s) 430, 557, 1153
Fsp4HI GCNGC 2 cut(s) 204, 1279
FspBI CTAG 1 cut(s) 287
FspI TGCGCA 1 cut(s) 524
GlaI GCGC 1 cut(s) 524
GluI GCNGC 2 cut(s) 204, 1279
HaeIII GGCC 4 cut(s) 40, 282, 352, 645
HapII CCGG 2 cut(s) 1041, 1230
HhaI GCGC 1 cut(s) 525
Hin1II CATG 8 cut(s) 185, 490, 633, 707, 802, 946, 1135, 1425
Hin6I GCGC 1 cut(s) 523
HinP1I GCGC 1 cut(s) 523
HincII GTYRAC 1 cut(s) 592
HindII GTYRAC 1 cut(s) 592
HindIII AAGCTT 3 cut(s) 91, 619, 652
HinfI GANTC 7 cut(s) 58, 693, 922, 1047, 1153, 1192, 1371
HpaII CCGG 2 cut(s) 1041, 1230
HphI GGTGA 2 cut(s) 901, 1297
Hpy166II GTNNAC 4 cut(s) 86, 592, 828, 1414
Hpy188I TCNGA 8 cut(s) 63, 115, 126, 820, 857, 1152, 1182, 1215
Hpy188III TCNNGA 9 cut(s) 312, 379, 407, 762, 1088, 1196, 1270, 1334, 1387
Hpy8I GTNNAC 4 cut(s) 86, 592, 828, 1414
HpyAV CCTTC 6 cut(s) 131, 564, 680, 895, 1062, 1193
HpyCH4III ACNGT 5 cut(s) 251, 461, 788, 1306, 1443
HpyCH4IV ACGT 2 cut(s) 53, 276
HpyCH4V TGCA 8 cut(s) 24, 181, 206, 565, 746, 1009, 1127, 1278
HpyF10VI GCNNNNNNNGC 4 cut(s) 99, 187, 651, 1239
HpyF3I CTNAG 6 cut(s) 89, 230, 665, 981, 1098, 1206
HpySE526I ACGT 2 cut(s) 53, 276
Hsp92II CATG 8 cut(s) 185, 490, 633, 707, 802, 946, 1135, 1425
HspAI GCGC 1 cut(s) 523
KpnI GGTACC 1 cut(s) 1447
Kzo9I GATC 2 cut(s) 289, 314
LmnI GCTCC 3 cut(s) 187, 488, 1425
Lsp1109I GCAGC 2 cut(s) 190, 1290
MaeI CTAG 1 cut(s) 287
MaeII ACGT 2 cut(s) 53, 276
MaeIII GTNAC 2 cut(s) 455, 889
MalI GATC 2 cut(s) 291, 316
MboI GATC 2 cut(s) 289, 314
MboII GAAGA 8 cut(s) 261, 362, 411, 719, 884, 917, 1056, 1349
MfeI CAATTG 2 cut(s) 222, 1030
MflI RGATCY 2 cut(s) 289, 314
MlyI GAGTC 1 cut(s) 702
MmeI TCCRAC 4 cut(s) 297, 376, 395, 591
MnlI CCTC 8 cut(s) 270, 515, 577, 607, 976, 1007, 1313, 1457
MroXI GAANNNNTTC 1 cut(s) 1051
MseI TTAA 9 cut(s) 80, 159, 500, 516, 603, 837, 1221, 1464, 1482
MslI CAYNNNNRTG 2 cut(s) 19, 1161
MspI CCGG 2 cut(s) 1041, 1230
MunI CAATTG 2 cut(s) 222, 1030
MwoI GCNNNNNNNGC 4 cut(s) 99, 187, 651, 1239
NcoI CCATGG 3 cut(s) 486, 629, 1421
NdeII GATC 2 cut(s) 289, 314
NlaIII CATG 8 cut(s) 185, 490, 633, 707, 802, 946, 1135, 1425
NlaIV GGNNCC 3 cut(s) 39, 1402, 1445
NmuCI GTSAC 1 cut(s) 889
NsbI TGCGCA 1 cut(s) 524
PceI AGGCCT 1 cut(s) 282
PdmI GAANNNNTTC 1 cut(s) 1051
PfeI GAWTC 6 cut(s) 58, 922, 1047, 1153, 1192, 1371
PkrI GCNGC 2 cut(s) 205, 1280
PleI GAGTC 1 cut(s) 701
PpsI GAGTC 1 cut(s) 701
Ppu21I YACGTR 1 cut(s) 54
PshAI GACNNNNGTC 1 cut(s) 597
PshBI ATTAAT 1 cut(s) 1482
PspN4I GGNNCC 3 cut(s) 39, 1402, 1445
PspPI GGNCC 2 cut(s) 38, 350
PstI CTGCAG 1 cut(s) 208
PsuI RGATCY 2 cut(s) 289, 314
RsaI GTAC 1 cut(s) 1445
RsaNI GTAC 1 cut(s) 1444
RseI CAYNNNNRTG 2 cut(s) 19, 1161
SaqAI TTAA 9 cut(s) 80, 159, 500, 516, 603, 837, 1221, 1464, 1482
SatI GCNGC 2 cut(s) 204, 1279
Sau3AI GATC 2 cut(s) 289, 314
Sau96I GGNCC 2 cut(s) 38, 350
SchI GAGTC 1 cut(s) 702
SfcI CTRYAG 1 cut(s) 204
SmiMI CAYNNNNRTG 2 cut(s) 19, 1161
SseBI AGGCCT 1 cut(s) 282
SsiI CCGC 3 cut(s) 701, 881, 1254
SspI AATATT 1 cut(s) 475
SspMI CTAG 1 cut(s) 287
StuI AGGCCT 1 cut(s) 282
StyI CCWWGG 4 cut(s) 486, 595, 629, 1421
TaaI ACNGT 5 cut(s) 251, 461, 788, 1306, 1443
TaiI ACGT 2 cut(s) 56, 279
TaqI TCGA 1 cut(s) 218
TfiI GAWTC 6 cut(s) 58, 922, 1047, 1153, 1192, 1371
Tru1I TTAA 9 cut(s) 80, 159, 500, 516, 603, 837, 1221, 1464, 1482
Tru9I TTAA 9 cut(s) 80, 159, 500, 516, 603, 837, 1221, 1464, 1482
TscAI CASTG 1 cut(s) 472
TseFI GTSAC 1 cut(s) 889
TseI GCWGC 2 cut(s) 203, 1278
Tsp45I GTSAC 1 cut(s) 889
TspDTI ATGAA 9 cut(s) 243, 291, 362, 434, 546, 720, 815, 1157, 1260
TspGWI ACGGA 2 cut(s) 65, 1204
TspRI CASTG 1 cut(s) 472
VspI ATTAAT 1 cut(s) 1482
XapI RAATTY 5 cut(s) 44, 402, 445, 732, 1144
XmnI GAANNNNTTC 1 cut(s) 1051
XspI CTAG 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.