Prupe.3G064900_v2.0.a1

regulation of response to stimulus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000281
Physical Location & Seq
Reverse (-)
4655344 .. 4656533
1190 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G064900.1

Sequence Viewer

Length: 1062 bp
ATGTTCAAGCAAGATATTAAGGATCCTTCAAATAAGCTTTTATCTAGGGTTGGTGAGGGAGATTGTTGCAATTGGACTGGAGTTGTGTGCGACAATTTAACCGGTCATGTCCGTGAGCTGCACCTTGGAAATTATTATTCAGATGAGTATTTGAATTACAGTTTGCATCAAGAAAACTATTTGGGGGGCAAGGTAAATACTTCTCTACTAAATTTAAAGCATCTGAGCTACTTGGATCTAAGCAACAATGATTTTGGAGGAATACAGATTCCTAGCTTCTTAGGTTCTCTTAAAAGACTCCTGAGTAAAAGCTACTACTGGATGAAGGTTAAGAATCTCCATTGGCTTTCTGGTCTTTCGAGCTTGCAGAACCTAGACCTGAGTCGTGTAGATCTTAGCAAAGCATCTGATTGGTTTCAGTCGGTGTTGCAAAACACGACATGGCTTAAAGTTCTTAATCTCAGGTGGAACATCATCTGGGGTACCATACCTCAATGGTTGTACACTTGTAGCAATCTTGAGTCCCTATCCCTTTATTTGAATCTCTTGCGAGGTGAAATTTCAAGTTGCATTGGAAACTTGACAGCCATTGTCAATCTTGACTCGTCTGCTAATCAACTTGAAGGGAAAATCCCAAACTCATTGCGAAATCTTTGTAAGTTGACGGTTCTTGATCTGTCAAGGAACTATTTCAATGGAAGCGTATCAGAAATATTGGGAAGCTTGTCAAGGTGTAGTTCAGGTCAAATGGAGTCACTGAAGCTGTCAACAAATGATTTCTCAGGTCCCCTATTCGATCAGCTAGGAAATTTCAGACATTTACGCCTCCTTGCTCTTTCAAGTAATTCAATATCAGGTCCAATTCCATTGTCCTTGGGACATCTGCCATTCGTAGAAGAGGCAAGCATTTCTGAAATTCATATTAATGGAACTCTTCCCAAAACTACTGGTATGGCCGGTCGGCTATACTCTAAGTATCCAGAGGGGTATGGTCCCTTGGCCATACTATTTATTTTTAAAAAGCCCCCCCGCCCATTTCGCCATGTATGCAAAATAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_6 LRR_8

Protein Analysis

354

Amino Acids

39.61

Weight (kDa)

8.8

Isoelectric Point (pI)

32.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 482
AccB1I GGYRCC 1 cut(s) 482
AciI CCGC 1 cut(s) 1030
AclWI GGATC 3 cut(s) 17, 30, 243
AcoI YGGCCR 2 cut(s) 954, 999
AcsI RAATTY 4 cut(s) 211, 558, 808, 915
AcuI CTGAAG 1 cut(s) 779
AfaI GTAC 2 cut(s) 484, 503
AgeI ACCGGT 1 cut(s) 101
AgsI TTSAA 9 cut(s) 7, 30, 154, 541, 564, 623, 694, 840, 849
AluBI AGCT 9 cut(s) 37, 118, 228, 276, 312, 363, 723, 763, 802
AluI AGCT 9 cut(s) 37, 118, 228, 276, 312, 363, 723, 763, 802
AlwI GGATC 3 cut(s) 17, 30, 243
AoxI GGCC 2 cut(s) 954, 999
ApeKI GCWGC 1 cut(s) 118
ApoI RAATTY 4 cut(s) 211, 558, 808, 915
AseI ATTAAT 1 cut(s) 924
AsiGI ACCGGT 1 cut(s) 101
Asp700I GAANNNNTTC 1 cut(s) 689
Asp718I GGTACC 1 cut(s) 482
AspS9I GGNCC 3 cut(s) 785, 857, 992
AsuHPI GGTGA 2 cut(s) 65, 566
AvaII GGWCC 3 cut(s) 785, 857, 992
BalI TGGCCA 1 cut(s) 1001
BamHI GGATCC 1 cut(s) 22
BanI GGYRCC 1 cut(s) 482
BbvI GCAGC 1 cut(s) 105
BciVI GTATCC 1 cut(s) 987
BfaI CTAG 4 cut(s) 45, 273, 374, 803
BfuI GTATCC 1 cut(s) 987
BglII AGATCT 1 cut(s) 391
BisI GCNGC 1 cut(s) 119
BlsI GCNGC 1 cut(s) 120
Bme18I GGWCC 3 cut(s) 785, 857, 992
BmgT120I GGNCC 3 cut(s) 785, 857, 992
BmiI GGNNCC 4 cut(s) 24, 484, 787, 994
BmsI GCATC 3 cut(s) 175, 229, 413
BoxI GACNNNNGTC 1 cut(s) 381
BpmI CTGGAG 1 cut(s) 99
BpuEI CTTGAG 1 cut(s) 539
BsaJI CCNNGG 3 cut(s) 124, 873, 996
BsaWI WCCGGW 1 cut(s) 101
Bse118I RCCGGY 2 cut(s) 101, 956
Bse1I ACTGG 3 cut(s) 82, 323, 952
Bse3DI GCAATG 1 cut(s) 641
BseDI CCNNGG 3 cut(s) 124, 873, 996
BseGI GGATG 1 cut(s) 327
BseMI GCAATG 1 cut(s) 641
BseMII CTCAG 5 cut(s) 215, 293, 371, 475, 795
BseNI ACTGG 3 cut(s) 82, 323, 952
BseXI GCAGC 1 cut(s) 105
BsgI GTGCAG 1 cut(s) 104
Bsh1285I CGRYCG 1 cut(s) 961
BshFI GGCC 2 cut(s) 956, 1001
BshNI GGYRCC 1 cut(s) 482
BshTI ACCGGT 1 cut(s) 101
BsiEI CGRYCG 1 cut(s) 961
BsiSI CCGG 2 cut(s) 102, 957
BslFI GGGAC 4 cut(s) 508, 771, 891, 978
BsmFI GGGAC 4 cut(s) 508, 771, 891, 978
BsnI GGCC 2 cut(s) 956, 1001
Bsp1407I TGTACA 1 cut(s) 501
Bsp143I GATC 5 cut(s) 22, 235, 391, 673, 796
BspACI CCGC 1 cut(s) 1030
BspANI GGCC 2 cut(s) 956, 1001
BspCNI CTCAG 5 cut(s) 216, 294, 372, 474, 794
BspLI GGNNCC 4 cut(s) 24, 484, 787, 994
BspPI GGATC 3 cut(s) 17, 30, 243
BspT107I GGYRCC 1 cut(s) 482
BsrDI GCAATG 1 cut(s) 641
BsrFI RCCGGY 2 cut(s) 101, 956
BsrGI TGTACA 1 cut(s) 501
BsrI ACTGG 3 cut(s) 82, 323, 952
BssAI RCCGGY 2 cut(s) 101, 956
BssECI CCNNGG 3 cut(s) 124, 873, 996
BssMI GATC 5 cut(s) 22, 235, 391, 673, 796
BssT1I CCWWGG 3 cut(s) 124, 873, 996
Bst4CI ACNGT 2 cut(s) 161, 667
Bst6I CTCTTC 2 cut(s) 891, 939
BstAUI TGTACA 1 cut(s) 501
BstC8I GCNNGC 2 cut(s) 365, 904
BstDEI CTNAG 9 cut(s) 224, 239, 280, 302, 380, 395, 461, 781, 972
BstF5I GGATG 1 cut(s) 327
BstKTI GATC 5 cut(s) 25, 238, 394, 676, 799
BstMBI GATC 5 cut(s) 22, 235, 391, 673, 796
BstMCI CGRYCG 1 cut(s) 961
BstMWI GCNNNNNNNGC 2 cut(s) 1038, 1047
BstPAI GACNNNNGTC 1 cut(s) 381
BstV1I GCAGC 1 cut(s) 105
BstX2I RGATCY 3 cut(s) 22, 235, 391
BstYI RGATCY 3 cut(s) 22, 235, 391
BsuI GTATCC 1 cut(s) 987
BsuRI GGCC 2 cut(s) 956, 1001
BtsCI GGATG 1 cut(s) 327
BtsIMutI CAGTG 1 cut(s) 755
Cac8I GCNNGC 2 cut(s) 365, 904
Cfr10I RCCGGY 2 cut(s) 101, 956
Cfr13I GGNCC 3 cut(s) 785, 857, 992
Csp6I GTAC 2 cut(s) 483, 502
CspAI ACCGGT 1 cut(s) 101
CviAII CATG 3 cut(s) 107, 441, 1043
CviQI GTAC 2 cut(s) 483, 502
DdeI CTNAG 9 cut(s) 224, 239, 280, 302, 380, 395, 461, 781, 972
DpnI GATC 5 cut(s) 24, 237, 393, 675, 798
DpnII GATC 5 cut(s) 22, 235, 391, 673, 796
DraI TTTAAA 2 cut(s) 216, 1018
EaeI YGGCCR 2 cut(s) 954, 999
Eam1104I CTCTTC 2 cut(s) 891, 939
EarI CTCTTC 2 cut(s) 891, 939
Eco130I CCWWGG 3 cut(s) 124, 873, 996
Eco47I GGWCC 3 cut(s) 785, 857, 992
Eco57I CTGAAG 1 cut(s) 779
EcoO109I RGGNCCY 1 cut(s) 785
EcoT14I CCWWGG 3 cut(s) 124, 873, 996
ErhI CCWWGG 3 cut(s) 124, 873, 996
FaeI CATG 3 cut(s) 110, 444, 1046
FaqI GGGAC 4 cut(s) 508, 771, 891, 978
FatI CATG 3 cut(s) 106, 440, 1042
FauI CCCGC 1 cut(s) 1037
Fnu4HI GCNGC 1 cut(s) 119
FokI GGATG 1 cut(s) 334
Fsp4HI GCNGC 1 cut(s) 119
FspBI CTAG 4 cut(s) 45, 273, 374, 803
GluI GCNGC 1 cut(s) 119
GsuI CTGGAG 1 cut(s) 99
HaeIII GGCC 2 cut(s) 956, 1001
HapII CCGG 2 cut(s) 102, 957
Hin1II CATG 3 cut(s) 110, 444, 1046
HincII GTYRAC 2 cut(s) 663, 768
HindII GTYRAC 2 cut(s) 663, 768
HindIII AAGCTT 2 cut(s) 35, 721
HinfI GANTC 8 cut(s) 268, 297, 334, 382, 521, 541, 602, 752
HpaII CCGG 2 cut(s) 102, 957
HphI GGTGA 2 cut(s) 65, 566
Hpy166II GTNNAC 3 cut(s) 504, 663, 768
Hpy188I TCNGA 6 cut(s) 142, 225, 409, 709, 815, 913
Hpy188III TCNNGA 6 cut(s) 170, 301, 518, 599, 671, 980
Hpy8I GTNNAC 3 cut(s) 504, 663, 768
HpyAV CCTTC 3 cut(s) 36, 319, 617
HpyCH4III ACNGT 2 cut(s) 161, 667
HpyCH4V TGCA 7 cut(s) 69, 121, 166, 367, 430, 570, 1050
HpyF10VI GCNNNNNNNGC 2 cut(s) 1038, 1047
HpyF3I CTNAG 9 cut(s) 224, 239, 280, 302, 380, 395, 461, 781, 972
Hsp92II CATG 3 cut(s) 110, 444, 1046
KpnI GGTACC 1 cut(s) 486
Kzo9I GATC 5 cut(s) 22, 235, 391, 673, 796
Lsp1109I GCAGC 1 cut(s) 105
LweI GCATC 3 cut(s) 175, 229, 413
MaeI CTAG 4 cut(s) 45, 273, 374, 803
MaeIII GTNAC 1 cut(s) 753
MalI GATC 5 cut(s) 24, 237, 393, 675, 798
MboI GATC 5 cut(s) 22, 235, 391, 673, 796
MboII GAAGA 2 cut(s) 908, 926
MfeI CAATTG 1 cut(s) 70
MflI RGATCY 3 cut(s) 22, 235, 391
MlsI TGGCCA 1 cut(s) 1001
MluNI TGGCCA 1 cut(s) 1001
MlyI GAGTC 5 cut(s) 291, 391, 530, 596, 761
MnlI CCTC 7 cut(s) 49, 251, 501, 545, 836, 892, 976
Mox20I TGGCCA 1 cut(s) 1001
MroXI GAANNNNTTC 1 cut(s) 689
MscI TGGCCA 1 cut(s) 1001
MseI TTAA 9 cut(s) 18, 98, 215, 291, 330, 447, 456, 924, 1017
MslI CAYNNNNRTG 2 cut(s) 111, 924
Msp20I TGGCCA 1 cut(s) 1001
MspI CCGG 2 cut(s) 102, 957
MunI CAATTG 1 cut(s) 70
MwoI GCNNNNNNNGC 2 cut(s) 1038, 1047
NdeII GATC 5 cut(s) 22, 235, 391, 673, 796
NlaIII CATG 3 cut(s) 110, 444, 1046
NlaIV GGNNCC 4 cut(s) 24, 484, 787, 994
NmuCI GTSAC 1 cut(s) 753
PdmI GAANNNNTTC 1 cut(s) 689
PfeI GAWTC 3 cut(s) 268, 334, 541
PinAI ACCGGT 1 cut(s) 101
PkrI GCNGC 1 cut(s) 120
PleI GAGTC 5 cut(s) 291, 390, 529, 596, 760
PpsI GAGTC 5 cut(s) 291, 390, 529, 596, 760
PpuMI RGGWCCY 1 cut(s) 785
PshAI GACNNNNGTC 1 cut(s) 381
PshBI ATTAAT 1 cut(s) 924
Psp5II RGGWCCY 1 cut(s) 785
PspN4I GGNNCC 4 cut(s) 24, 484, 787, 994
PspPI GGNCC 3 cut(s) 785, 857, 992
PspPPI RGGWCCY 1 cut(s) 785
PsuI RGATCY 3 cut(s) 22, 235, 391
RsaI GTAC 2 cut(s) 484, 503
RsaNI GTAC 2 cut(s) 483, 502
RseI CAYNNNNRTG 2 cut(s) 111, 924
SaqAI TTAA 9 cut(s) 18, 98, 215, 291, 330, 447, 456, 924, 1017
SatI GCNGC 1 cut(s) 119
Sau3AI GATC 5 cut(s) 22, 235, 391, 673, 796
Sau96I GGNCC 3 cut(s) 785, 857, 992
SchI GAGTC 5 cut(s) 291, 391, 530, 596, 761
SfaNI GCATC 3 cut(s) 175, 229, 413
SinI GGWCC 3 cut(s) 785, 857, 992
SmiMI CAYNNNNRTG 2 cut(s) 111, 924
SmlI CTYRAG 1 cut(s) 518
SmoI CTYRAG 1 cut(s) 518
SsiI CCGC 1 cut(s) 1030
SspI AATATT 1 cut(s) 714
SspMI CTAG 4 cut(s) 45, 273, 374, 803
StyI CCWWGG 3 cut(s) 124, 873, 996
TaaI ACNGT 2 cut(s) 161, 667
TaqI TCGA 2 cut(s) 359, 795
TatI WGTACW 1 cut(s) 501
TfiI GAWTC 3 cut(s) 268, 334, 541
Tru1I TTAA 9 cut(s) 18, 98, 215, 291, 330, 447, 456, 924, 1017
Tru9I TTAA 9 cut(s) 18, 98, 215, 291, 330, 447, 456, 924, 1017
TscAI CASTG 1 cut(s) 762
TseFI GTSAC 1 cut(s) 753
TseI GCWGC 1 cut(s) 118
Tsp45I GTSAC 1 cut(s) 753
TspDTI ATGAA 2 cut(s) 338, 908
TspGWI ACGGA 1 cut(s) 101
TspRI CASTG 1 cut(s) 762
VpaK11BI GGWCC 3 cut(s) 785, 857, 992
VspI ATTAAT 1 cut(s) 924
XapI RAATTY 4 cut(s) 211, 558, 808, 915
XcmI CCANNNNNNNNNTGG 1 cut(s) 347
XmnI GAANNNNTTC 1 cut(s) 689
XspI CTAG 4 cut(s) 45, 273, 374, 803
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.