pycom01g18940

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000281
Physical Location & Seq
Forward (+)
17722017 .. 17722391
375 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g18940.1

Sequence Viewer

Length: 375 bp
ATGACGAATTTGACATTTTTGAGTCACTTAAACTTGGCCTACAACAATTTGACGGGACGAATTCCGGGAAGCACTCAACTGCAGAGCCTCGATCAGTCGAGCTTCGTCGGCAATGAACTATGCGGAGCTCCACTCAACAAGAATTGCAGCACGAATGGGGTGATACCGCCACCAACAGTTGAGCAAGACGGAGAAGGTGGATACCGTTTACTAGAAGATGGGTGGTTCTACGTGGGCTTAGGAGTTGGATTCTTCATGGGGTTTTGGATTGTGCTTGGTTCTTTGCTGGTAAACATGCCATGGAGCATTCTTCTTTCACAGTTGCTGAATAGGATAGTGCTTAAAATGTATCATGTAATTGTTGAATATGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

125

Amino Acids

13.72

Weight (kDa)

5.08

Isoelectric Point (pI)

35.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 123, 167
AcsI RAATTY 2 cut(s) 7, 60
AgsI TTSAA 1 cut(s) 365
AluBI AGCT 2 cut(s) 102, 128
AluI AGCT 2 cut(s) 102, 128
Alw21I GWGCWC 1 cut(s) 130
AlwNI CAGNNNCTG 1 cut(s) 325
AoxI GGCC 1 cut(s) 36
ApeKI GCWGC 1 cut(s) 147
ApoI RAATTY 2 cut(s) 7, 60
AsuC2I CCSGG 1 cut(s) 66
AsuHPI GGTGA 1 cut(s) 172
BanII GRGCYC 1 cut(s) 130
Bbv12I GWGCWC 1 cut(s) 130
BbvI GCAGC 1 cut(s) 159
BccI CCATC 1 cut(s) 212
BciVI GTATCC 1 cut(s) 194
BcnI CCSGG 1 cut(s) 66
BfaI CTAG 1 cut(s) 212
BfmI CTRYAG 1 cut(s) 80
BfuI GTATCC 1 cut(s) 194
BisI GCNGC 1 cut(s) 148
BlsI GCNGC 1 cut(s) 149
Bme1390I CCNGG 1 cut(s) 66
BmrFI CCNGG 1 cut(s) 66
BplI GAGNNNNNCTC 2 cut(s) 117, 149
Bpu10I CCTNAGC 1 cut(s) 238
BpuMI CCSGG 1 cut(s) 66
BsaAI YACGTR 1 cut(s) 232
BsaJI CCNNGG 1 cut(s) 299
Bse3DI GCAATG 1 cut(s) 118
BseDI CCNNGG 1 cut(s) 299
BseMI GCAATG 1 cut(s) 118
BseXI GCAGC 1 cut(s) 159
BshFI GGCC 1 cut(s) 38
BsiHKAI GWGCWC 1 cut(s) 130
BsiSI CCGG 1 cut(s) 65
BslFI GGGAC 1 cut(s) 69
BsmFI GGGAC 1 cut(s) 69
BsmI GAATGC 1 cut(s) 306
BsnI GGCC 1 cut(s) 38
Bsp1286I GDGCHC 1 cut(s) 130
Bsp143I GATC 1 cut(s) 91
Bsp19I CCATGG 1 cut(s) 299
BspACI CCGC 2 cut(s) 123, 167
BspANI GGCC 1 cut(s) 38
BspMAI CTGCAG 1 cut(s) 84
BsrDI GCAATG 1 cut(s) 118
BssECI CCNNGG 1 cut(s) 299
BssMI GATC 1 cut(s) 91
BssT1I CCWWGG 1 cut(s) 299
Bst4CI ACNGT 3 cut(s) 178, 206, 321
BstBAI YACGTR 1 cut(s) 232
BstDEI CTNAG 1 cut(s) 238
BstDSI CCRYGG 1 cut(s) 299
BstKTI GATC 1 cut(s) 94
BstMBI GATC 1 cut(s) 91
BstMWI GCNNNNNNNGC 1 cut(s) 108
BstNSI RCATGY 1 cut(s) 298
BstSCI CCNGG 1 cut(s) 64
BstSFI CTRYAG 1 cut(s) 80
BstV1I GCAGC 1 cut(s) 159
BsuI GTATCC 1 cut(s) 194
BsuRI GGCC 1 cut(s) 38
BtgI CCRYGG 1 cut(s) 299
CaiI CAGNNNCTG 1 cut(s) 325
CviAII CATG 4 cut(s) 256, 295, 300, 353
CviJI RGCY 5 cut(s) 38, 87, 102, 128, 237
CviKI_1 RGCY 5 cut(s) 38, 87, 102, 128, 237
DdeI CTNAG 1 cut(s) 238
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
Ecl136II GAGCTC 1 cut(s) 128
Eco130I CCWWGG 1 cut(s) 299
Eco24I GRGCYC 1 cut(s) 130
Eco53kI GAGCTC 1 cut(s) 128
EcoICRI GAGCTC 1 cut(s) 128
EcoRI GAATTC 1 cut(s) 60
EcoT14I CCWWGG 1 cut(s) 299
EcoT38I GRGCYC 1 cut(s) 130
ErhI CCWWGG 1 cut(s) 299
FaeI CATG 4 cut(s) 259, 298, 303, 356
FaiI YATR 6 cut(s) 121, 257, 296, 301, 354, 369
FaqI GGGAC 1 cut(s) 69
FatI CATG 4 cut(s) 255, 294, 299, 352
Fnu4HI GCNGC 1 cut(s) 148
FriOI GRGCYC 1 cut(s) 130
Fsp4HI GCNGC 1 cut(s) 148
FspBI CTAG 1 cut(s) 212
GluI GCNGC 1 cut(s) 148
HaeIII GGCC 1 cut(s) 38
HapII CCGG 1 cut(s) 65
Hin1II CATG 4 cut(s) 259, 298, 303, 356
HinfI GANTC 2 cut(s) 22, 249
HpaII CCGG 1 cut(s) 65
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 2 cut(s) 209, 292
Hpy8I GTNNAC 2 cut(s) 209, 292
Hpy99I CGWCG 1 cut(s) 110
HpyAV CCTTC 1 cut(s) 188
HpyCH4III ACNGT 3 cut(s) 178, 206, 321
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 2 cut(s) 82, 147
HpyF10VI GCNNNNNNNGC 1 cut(s) 108
HpyF3I CTNAG 1 cut(s) 238
HpySE526I ACGT 1 cut(s) 231
Hsp92II CATG 4 cut(s) 259, 298, 303, 356
Kzo9I GATC 1 cut(s) 91
LmnI GCTCC 3 cut(s) 125, 133, 303
LpnPI CCDG 2 cut(s) 78, 272
Lsp1109I GCAGC 1 cut(s) 159
MaeI CTAG 1 cut(s) 212
MaeII ACGT 1 cut(s) 231
MaeIII GTNAC 1 cut(s) 23
MalI GATC 1 cut(s) 93
MboI GATC 1 cut(s) 91
MboII GAAGA 3 cut(s) 227, 244, 302
MhlI GDGCHC 1 cut(s) 130
MluCI AATT 5 cut(s) 7, 46, 60, 142, 357
MlyI GAGTC 1 cut(s) 31
MmeI TCCRAC 1 cut(s) 226
MnlI CCTC 1 cut(s) 98
MseI TTAA 2 cut(s) 29, 342
MspI CCGG 1 cut(s) 65
MspR9I CCNGG 1 cut(s) 66
Mva1269I GAATGC 1 cut(s) 306
MwoI GCNNNNNNNGC 1 cut(s) 108
NciI CCSGG 1 cut(s) 66
NcoI CCATGG 1 cut(s) 299
NdeII GATC 1 cut(s) 91
NlaIII CATG 4 cut(s) 259, 298, 303, 356
NmuCI GTSAC 1 cut(s) 23
NspI RCATGY 1 cut(s) 298
PctI GAATGC 1 cut(s) 306
PfeI GAWTC 1 cut(s) 249
PfoI TCCNGGA 1 cut(s) 64
PkrI GCNGC 1 cut(s) 149
PleI GAGTC 1 cut(s) 30
PpsI GAGTC 1 cut(s) 30
Ppu21I YACGTR 1 cut(s) 232
Psp124BI GAGCTC 1 cut(s) 130
PstI CTGCAG 1 cut(s) 84
PstNI CAGNNNCTG 1 cut(s) 325
SacI GAGCTC 1 cut(s) 130
SaqAI TTAA 2 cut(s) 29, 342
SatI GCNGC 1 cut(s) 148
Sau3AI GATC 1 cut(s) 91
SchI GAGTC 1 cut(s) 31
ScrFI CCNGG 1 cut(s) 66
SduI GDGCHC 1 cut(s) 130
SetI ASST 4 cut(s) 104, 130, 199, 234
SfcI CTRYAG 1 cut(s) 80
Sse9I AATT 5 cut(s) 7, 46, 60, 142, 357
SsiI CCGC 2 cut(s) 123, 167
SspMI CTAG 1 cut(s) 212
SstI GAGCTC 1 cut(s) 130
StyD4I CCNGG 1 cut(s) 64
StyI CCWWGG 1 cut(s) 299
TaaI ACNGT 3 cut(s) 178, 206, 321
TaiI ACGT 1 cut(s) 234
TaqI TCGA 2 cut(s) 90, 98
TasI AATT 5 cut(s) 7, 46, 60, 142, 357
TfiI GAWTC 1 cut(s) 249
Tru1I TTAA 2 cut(s) 29, 342
Tru9I TTAA 2 cut(s) 29, 342
TseFI GTSAC 1 cut(s) 23
TseI GCWGC 1 cut(s) 147
Tsp45I GTSAC 1 cut(s) 23
TspDTI ATGAA 2 cut(s) 129, 244
TspGWI ACGGA 1 cut(s) 204
XapI RAATTY 2 cut(s) 7, 60
XceI RCATGY 1 cut(s) 298
XspI CTAG 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.