pycom01g18480

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Reverse (-)
17473208 .. 17473698
491 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g18480.2

Sequence Viewer

Length: 444 bp
ATGGAGAGAAGCACGAGAGTTGTTTTACTACTAATCAGGTTTCTAGCTATTGCAACCATTACTATCCGTATTAGTTTATGCAATGGAAATCTCCGTTGGCCTCCACTTTGGAAAGAAAGCGAAAGACAAGCACTTCTAATGTTCAAGCAAGATCTCAATGAAGAACTTACAAGCCTCCTCGCATTGCAGTCATTCAACTTATCAAAATATCGCTTCACCGGAATAATTCCTTCAAAGATTGGTAACATGAGATGGTTAGAATCTCTCAATTTGTCCACGAACAAACTCCATGGCGAAATTCCTTCGAGCATGATGAATTTGACATTTCTAAGTCGCTTGAACTTGACCTATAACAATTTGACGGGAAGAATTCCGGAAAGCACTCAGCTGCAGAGCCTCGATCAGTCTAGCTTCGTCAACAACAAAATCTGCGGACCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

148

Amino Acids

16.83

Weight (kDa)

9.82

Isoelectric Point (pI)

53.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 373
AciI CCGC 1 cut(s) 432
AcsI RAATTY 3 cut(s) 297, 316, 369
AgsI TTSAA 4 cut(s) 145, 196, 234, 340
AjuI GAANNNNNNNTTGG 2 cut(s) 79, 111
AluBI AGCT 3 cut(s) 47, 388, 411
AluI AGCT 3 cut(s) 47, 388, 411
Aor13HI TCCGGA 1 cut(s) 373
AoxI GGCC 1 cut(s) 98
ApeKI GCWGC 1 cut(s) 388
ApoI RAATTY 3 cut(s) 297, 316, 369
AspS9I GGNCC 1 cut(s) 434
AsuHPI GGTGA 1 cut(s) 208
AvaII GGWCC 1 cut(s) 434
BauI CACGAG 1 cut(s) 13
BbvI GCAGC 1 cut(s) 375
BccI CCATC 1 cut(s) 246
BfaI CTAG 2 cut(s) 44, 408
BfmI CTRYAG 1 cut(s) 389
BglII AGATCT 1 cut(s) 151
BisI GCNGC 1 cut(s) 389
BlsI GCNGC 1 cut(s) 390
Bme18I GGWCC 1 cut(s) 434
BmgT120I GGNCC 1 cut(s) 434
BsaJI CCNNGG 1 cut(s) 289
BsaWI WCCGGW 2 cut(s) 218, 373
Bse3DI GCAATG 2 cut(s) 88, 182
BseAI TCCGGA 1 cut(s) 373
BseDI CCNNGG 1 cut(s) 289
BseMI GCAATG 2 cut(s) 88, 182
BseMII CTCAG 1 cut(s) 398
BseRI GAGGAG 1 cut(s) 167
BseXI GCAGC 1 cut(s) 375
BshFI GGCC 1 cut(s) 100
BsiSI CCGG 2 cut(s) 219, 374
BsnI GGCC 1 cut(s) 100
Bsp13I TCCGGA 1 cut(s) 373
Bsp143I GATC 2 cut(s) 151, 400
Bsp19I CCATGG 1 cut(s) 289
BspACI CCGC 1 cut(s) 432
BspANI GGCC 1 cut(s) 100
BspCNI CTCAG 1 cut(s) 397
BspEI TCCGGA 1 cut(s) 373
BspMAI CTGCAG 1 cut(s) 393
BsrDI GCAATG 2 cut(s) 88, 182
BssECI CCNNGG 1 cut(s) 289
BssMI GATC 2 cut(s) 151, 400
BssSI CACGAG 1 cut(s) 13
BssT1I CCWWGG 1 cut(s) 289
Bst2BI CACGAG 1 cut(s) 13
BstDEI CTNAG 2 cut(s) 329, 384
BstDSI CCRYGG 1 cut(s) 289
BstKTI GATC 2 cut(s) 154, 403
BstMBI GATC 2 cut(s) 151, 400
BstSFI CTRYAG 1 cut(s) 389
BstV1I GCAGC 1 cut(s) 375
BstX2I RGATCY 1 cut(s) 151
BstYI RGATCY 1 cut(s) 151
BsuRI GGCC 1 cut(s) 100
BtgI CCRYGG 1 cut(s) 289
Cfr13I GGNCC 1 cut(s) 434
CviAII CATG 3 cut(s) 247, 290, 310
CviJI RGCY 6 cut(s) 47, 100, 174, 388, 396, 411
CviKI_1 RGCY 6 cut(s) 47, 100, 174, 388, 396, 411
DdeI CTNAG 2 cut(s) 329, 384
DpnI GATC 2 cut(s) 153, 402
DpnII GATC 2 cut(s) 151, 400
Eco130I CCWWGG 1 cut(s) 289
Eco47I GGWCC 1 cut(s) 434
EcoRI GAATTC 1 cut(s) 369
EcoT14I CCWWGG 1 cut(s) 289
ErhI CCWWGG 1 cut(s) 289
FaeI CATG 3 cut(s) 250, 293, 313
FaiI YATR 5 cut(s) 79, 248, 291, 311, 351
FatI CATG 3 cut(s) 246, 289, 309
Fnu4HI GCNGC 1 cut(s) 389
Fsp4HI GCNGC 1 cut(s) 389
FspBI CTAG 2 cut(s) 44, 408
GluI GCNGC 1 cut(s) 389
HaeIII GGCC 1 cut(s) 100
HapII CCGG 2 cut(s) 219, 374
Hin1II CATG 3 cut(s) 250, 293, 313
HincII GTYRAC 1 cut(s) 418
HindII GTYRAC 1 cut(s) 418
HinfI GANTC 1 cut(s) 260
HpaII CCGG 2 cut(s) 219, 374
HphI GGTGA 1 cut(s) 208
Hpy166II GTNNAC 2 cut(s) 276, 418
Hpy188III TCNNGA 1 cut(s) 374
Hpy8I GTNNAC 2 cut(s) 276, 418
HpyAV CCTTC 2 cut(s) 240, 312
HpyCH4V TGCA 4 cut(s) 53, 81, 187, 391
HpyF3I CTNAG 2 cut(s) 329, 384
Hsp92II CATG 3 cut(s) 250, 293, 313
Kpn2I TCCGGA 1 cut(s) 373
Kzo9I GATC 2 cut(s) 151, 400
LpnPI CCDG 3 cut(s) 22, 232, 387
Lsp1109I GCAGC 1 cut(s) 375
MaeI CTAG 2 cut(s) 44, 408
MaeIII GTNAC 1 cut(s) 242
MalI GATC 2 cut(s) 153, 402
MboI GATC 2 cut(s) 151, 400
MboII GAAGA 2 cut(s) 173, 378
MflI RGATCY 1 cut(s) 151
MluCI AATT 6 cut(s) 225, 268, 297, 316, 355, 369
MnlI CCTC 4 cut(s) 111, 185, 188, 407
MroI TCCGGA 1 cut(s) 373
MspA1I CMGCKG 1 cut(s) 388
MspI CCGG 2 cut(s) 219, 374
NcoI CCATGG 1 cut(s) 289
NdeII GATC 2 cut(s) 151, 400
NlaIII CATG 3 cut(s) 250, 293, 313
PfeI GAWTC 1 cut(s) 260
PkrI GCNGC 1 cut(s) 390
PspPI GGNCC 1 cut(s) 434
PstI CTGCAG 1 cut(s) 393
PsuI RGATCY 1 cut(s) 151
PvuII CAGCTG 1 cut(s) 388
SatI GCNGC 1 cut(s) 389
Sau3AI GATC 2 cut(s) 151, 400
Sau96I GGNCC 1 cut(s) 434
SetI ASST 6 cut(s) 41, 49, 350, 390, 413, 439
SfcI CTRYAG 1 cut(s) 389
SinI GGWCC 1 cut(s) 434
Sse9I AATT 6 cut(s) 225, 268, 297, 316, 355, 369
SsiI CCGC 1 cut(s) 432
SspMI CTAG 2 cut(s) 44, 408
StyI CCWWGG 1 cut(s) 289
TaqI TCGA 2 cut(s) 305, 399
TasI AATT 6 cut(s) 225, 268, 297, 316, 355, 369
TfiI GAWTC 1 cut(s) 260
TseI GCWGC 1 cut(s) 388
TspDTI ATGAA 2 cut(s) 174, 329
TspGWI ACGGA 2 cut(s) 56, 83
VpaK11BI GGWCC 1 cut(s) 434
XapI RAATTY 3 cut(s) 297, 316, 369
XspI CTAG 2 cut(s) 44, 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.