Prupe.3G021800_v2.0.a1

regulation of response to stimulus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000281
Physical Location & Seq
Reverse (-)
1591936 .. 1592898
963 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G021800.1

Sequence Viewer

Length: 813 bp
ATGAGAATTGTTTCAGTTTTCAGATTTCTAAGCATTGCAACCATTACTACCATTAGCTTATGCAATAGAAATTTGGGTGTGCCTTGTAAACAAAATGAGAGACAAGCACTTCTTCTAATGTTCAAGCAAGATCTTAAGGATCCTTCAAATAGGCTTTTATCTTGGGTTGGTGAGGGAGATTGTTGCAATTGGACTGGAGTTGTCTGCGACAATTTAACCGGTCGTGTCCATGAGTATTTGAATTACAGTTTGTATCAAGAAAACTCTTTGGGTGGCAAGGTAAATACTTCTCTACCAAATTTAAAGCATCTGAGCTACTTGGATCTAAGCAACAATGATTTTGGAGGAATACAGATTCCTAGCTTCTTAGGTTCTCTTAGAAGACTACCTCAATGGTTGTACACTTGTAGCAATCTTGAGTCCCTATCCATTGGAAACTTGACAGCCATTGTCAATCTTGACTTGTCTGCTAATCAACTTGGAGGGAAAATCCCAAACTCATTGGGAAATCTTTGTAAGTTGACGGTTCTTGGTCTGTCAAGGAACTATTTCAATGGAAGAGTATCAGAAATATTGGGAAGCTTGTCAAGGTGTCCACTGTCCGATCAGCTGGGAAATTTCAGACATTTACGCCTCCTTGCTCTTATGAGCAATTCAATATCAGGCCCAATTCCAGTGTCCTTGGGAAATCTGTTATTCCTAGAAGAGGCAAGCATTTCTGAAAATCATTTTGATGGAACTCTTCCAAAAACTACTGGTCAACTCAAAATGGTAACGGTGTCTTATGTAAAGAGTATAGCCGTCCGGCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_6 LRR_8

Protein Analysis

271

Amino Acids

29.75

Weight (kDa)

8.93

Isoelectric Point (pI)

25.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 134, 147, 330
AcsI RAATTY 3 cut(s) 70, 298, 616
AfaI GTAC 1 cut(s) 401
AfiI CCNNNNNNNGG 1 cut(s) 706
AflII CTTAAG 1 cut(s) 134
AgeI ACCGGT 1 cut(s) 218
AgsI TTSAA 5 cut(s) 124, 147, 241, 553, 657
AluBI AGCT 5 cut(s) 57, 315, 363, 582, 610
AluI AGCT 5 cut(s) 57, 315, 363, 582, 610
Alw26I GTCTC 1 cut(s) 94
AlwI GGATC 3 cut(s) 134, 147, 330
AoxI GGCC 1 cut(s) 664
ApoI RAATTY 3 cut(s) 70, 298, 616
AsiGI ACCGGT 1 cut(s) 218
Asp700I GAANNNNTTC 2 cut(s) 10, 548
AspS9I GGNCC 1 cut(s) 665
AsuHPI GGTGA 1 cut(s) 182
BamHI GGATCC 1 cut(s) 139
BbsI GAAGAC 1 cut(s) 388
BccI CCATC 1 cut(s) 728
BceAI ACGGC 1 cut(s) 785
BcoDI GTCTC 1 cut(s) 94
BfaI CTAG 2 cut(s) 360, 701
BfrI CTTAAG 1 cut(s) 134
BglII AGATCT 1 cut(s) 130
BmgT120I GGNCC 1 cut(s) 665
BmiI GGNNCC 1 cut(s) 141
BmsI GCATC 1 cut(s) 316
BpiI GAAGAC 1 cut(s) 388
BpmI CTGGAG 1 cut(s) 216
BpuEI CTTGAG 1 cut(s) 437
BsaJI CCNNGG 1 cut(s) 681
BsaWI WCCGGW 1 cut(s) 218
Bsc4I CCNNNNNNNGG 1 cut(s) 706
Bse118I RCCGGY 1 cut(s) 218
Bse1I ACTGG 3 cut(s) 199, 674, 760
Bse3DI GCAATG 1 cut(s) 33
BseDI CCNNGG 1 cut(s) 681
BseLI CCNNNNNNNGG 1 cut(s) 706
BseMI GCAATG 1 cut(s) 33
BseMII CTCAG 1 cut(s) 302
BseNI ACTGG 3 cut(s) 199, 674, 760
BseYI CCCAGC 1 cut(s) 610
Bsh1285I CGRYCG 1 cut(s) 223
BshFI GGCC 1 cut(s) 666
BshTI ACCGGT 1 cut(s) 218
BsiEI CGRYCG 1 cut(s) 223
BsiSI CCGG 2 cut(s) 219, 805
BslFI GGGAC 1 cut(s) 406
BslI CCNNNNNNNGG 1 cut(s) 706
BsmAI GTCTC 1 cut(s) 94
BsmFI GGGAC 1 cut(s) 406
BsnI GGCC 1 cut(s) 666
Bsp1407I TGTACA 1 cut(s) 399
Bsp143I GATC 4 cut(s) 130, 139, 322, 604
BspANI GGCC 1 cut(s) 666
BspCNI CTCAG 1 cut(s) 303
BspLI GGNNCC 1 cut(s) 141
BspPI GGATC 3 cut(s) 134, 147, 330
BspTI CTTAAG 1 cut(s) 134
BsrDI GCAATG 1 cut(s) 33
BsrFI RCCGGY 1 cut(s) 218
BsrGI TGTACA 1 cut(s) 399
BsrI ACTGG 3 cut(s) 199, 674, 760
BssAI RCCGGY 1 cut(s) 218
BssECI CCNNGG 1 cut(s) 681
BssMI GATC 4 cut(s) 130, 139, 322, 604
BssT1I CCWWGG 1 cut(s) 681
Bst4CI ACNGT 4 cut(s) 248, 526, 600, 778
Bst6I CTCTTC 3 cut(s) 553, 699, 747
BstAFI CTTAAG 1 cut(s) 134
BstAUI TGTACA 1 cut(s) 399
BstC8I GCNNGC 1 cut(s) 712
BstDEI CTNAG 5 cut(s) 29, 311, 326, 367, 377
BstENI CCTNNNNNAGG 1 cut(s) 704
BstKTI GATC 4 cut(s) 133, 142, 325, 607
BstMAI GTCTC 1 cut(s) 94
BstMBI GATC 4 cut(s) 130, 139, 322, 604
BstMCI CGRYCG 1 cut(s) 223
BstV2I GAAGAC 1 cut(s) 388
BstX2I RGATCY 3 cut(s) 130, 139, 322
BstYI RGATCY 3 cut(s) 130, 139, 322
BsuRI GGCC 1 cut(s) 666
BtsIMutI CAGTG 2 cut(s) 596, 681
Cac8I GCNNGC 1 cut(s) 712
Cfr10I RCCGGY 1 cut(s) 218
Cfr13I GGNCC 1 cut(s) 665
Csp6I GTAC 1 cut(s) 400
CspAI ACCGGT 1 cut(s) 218
CviAII CATG 1 cut(s) 230
CviQI GTAC 1 cut(s) 400
DdeI CTNAG 5 cut(s) 29, 311, 326, 367, 377
DpnI GATC 4 cut(s) 132, 141, 324, 606
DpnII GATC 4 cut(s) 130, 139, 322, 604
DraI TTTAAA 1 cut(s) 303
Eam1104I CTCTTC 3 cut(s) 553, 699, 747
EarI CTCTTC 3 cut(s) 553, 699, 747
Eco130I CCWWGG 1 cut(s) 681
EcoNI CCTNNNNNAGG 1 cut(s) 704
EcoT14I CCWWGG 1 cut(s) 681
ErhI CCWWGG 1 cut(s) 681
FaeI CATG 1 cut(s) 233
FaiI YATR 6 cut(s) 61, 231, 647, 786, 797, 811
FalI AAGNNNNNCTT 2 cut(s) 96, 128
FaqI GGGAC 1 cut(s) 406
FatI CATG 1 cut(s) 229
FspBI CTAG 2 cut(s) 360, 701
GsaI CCCAGC 1 cut(s) 614
GsuI CTGGAG 1 cut(s) 216
HaeIII GGCC 1 cut(s) 666
HapII CCGG 2 cut(s) 219, 805
Hin1II CATG 1 cut(s) 233
HincII GTYRAC 2 cut(s) 522, 761
HindII GTYRAC 2 cut(s) 522, 761
HindIII AAGCTT 1 cut(s) 580
HinfI GANTC 2 cut(s) 355, 419
HpaII CCGG 2 cut(s) 219, 805
HphI GGTGA 1 cut(s) 182
Hpy166II GTNNAC 5 cut(s) 89, 402, 522, 596, 761
Hpy188I TCNGA 6 cut(s) 23, 312, 568, 604, 623, 721
Hpy188III TCNNGA 3 cut(s) 257, 416, 458
Hpy8I GTNNAC 5 cut(s) 89, 402, 522, 596, 761
HpyAV CCTTC 1 cut(s) 153
HpyCH4III ACNGT 4 cut(s) 248, 526, 600, 778
HpyCH4V TGCA 3 cut(s) 38, 63, 186
HpyF3I CTNAG 5 cut(s) 29, 311, 326, 367, 377
Hsp92II CATG 1 cut(s) 233
Kzo9I GATC 4 cut(s) 130, 139, 322, 604
LpnPI CCDG 6 cut(s) 180, 232, 596, 648, 687, 741
LweI GCATC 1 cut(s) 316
MaeI CTAG 2 cut(s) 360, 701
MaeIII GTNAC 1 cut(s) 772
MalI GATC 4 cut(s) 132, 141, 324, 606
MboI GATC 4 cut(s) 130, 139, 322, 604
MboII GAAGA 5 cut(s) 104, 393, 570, 716, 734
MfeI CAATTG 1 cut(s) 187
MflI RGATCY 3 cut(s) 130, 139, 322
MluCI AATT 9 cut(s) 6, 70, 187, 211, 241, 298, 616, 652, 669
MlyI GAGTC 1 cut(s) 428
MnlI CCTC 6 cut(s) 166, 338, 399, 476, 644, 700
MroXI GAANNNNTTC 2 cut(s) 10, 548
MseI TTAA 3 cut(s) 135, 215, 302
MslI CAYNNNNRTG 1 cut(s) 732
MspA1I CMGCKG 1 cut(s) 610
MspCI CTTAAG 1 cut(s) 134
MspI CCGG 2 cut(s) 219, 805
MunI CAATTG 1 cut(s) 187
NdeII GATC 4 cut(s) 130, 139, 322, 604
NlaIII CATG 1 cut(s) 233
NlaIV GGNNCC 1 cut(s) 141
PdmI GAANNNNTTC 2 cut(s) 10, 548
PfeI GAWTC 1 cut(s) 355
PinAI ACCGGT 1 cut(s) 218
PleI GAGTC 1 cut(s) 427
PpsI GAGTC 1 cut(s) 427
PspFI CCCAGC 1 cut(s) 610
PspN4I GGNNCC 1 cut(s) 141
PspPI GGNCC 1 cut(s) 665
PsuI RGATCY 3 cut(s) 130, 139, 322
PvuII CAGCTG 1 cut(s) 610
RsaI GTAC 1 cut(s) 401
RsaNI GTAC 1 cut(s) 400
RseI CAYNNNNRTG 1 cut(s) 732
SaqAI TTAA 3 cut(s) 135, 215, 302
Sau3AI GATC 4 cut(s) 130, 139, 322, 604
Sau96I GGNCC 1 cut(s) 665
SchI GAGTC 1 cut(s) 428
SetI ASST 9 cut(s) 59, 282, 317, 365, 373, 391, 584, 593, 612
SfaNI GCATC 1 cut(s) 316
SmiMI CAYNNNNRTG 1 cut(s) 732
SmlI CTYRAG 2 cut(s) 134, 416
SmoI CTYRAG 2 cut(s) 134, 416
Sse9I AATT 9 cut(s) 6, 70, 187, 211, 241, 298, 616, 652, 669
SspI AATATT 1 cut(s) 573
SspMI CTAG 2 cut(s) 360, 701
StyI CCWWGG 1 cut(s) 681
TaaI ACNGT 4 cut(s) 248, 526, 600, 778
TasI AATT 9 cut(s) 6, 70, 187, 211, 241, 298, 616, 652, 669
TatI WGTACW 1 cut(s) 399
TfiI GAWTC 1 cut(s) 355
Tru1I TTAA 3 cut(s) 135, 215, 302
Tru9I TTAA 3 cut(s) 135, 215, 302
TscAI CASTG 2 cut(s) 603, 681
TspRI CASTG 2 cut(s) 603, 681
Vha464I CTTAAG 1 cut(s) 134
XagI CCTNNNNNAGG 1 cut(s) 704
XapI RAATTY 3 cut(s) 70, 298, 616
XmnI GAANNNNTTC 2 cut(s) 10, 548
XspI CTAG 2 cut(s) 360, 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.