MD15G1414700.v1.1

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000281
Physical Location & Seq
Reverse (-)
51506858 .. 51510027
3170 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1414700.v1.1.491

Sequence Viewer

Length: 822 bp
ATGGCCATTACCTTTCCAAGAAATACCAGTTTTGAAGTTTTCTGTGAAATCCCGTTTCCAGATTTCATTATTATAATCTACGTATTTGAGTTTGGGTTCCAAGTTGCAGGGAACTTATGTGTCTACAGAGAAAAGCTATGTTTCACCTTTTGTGGAGATGAGGCTATATACGAGTATTTGGAGACGTCGCGTGTCGATCCTGGACGTATGTTGGGATCGGGACGTGACATTTTCAGTGAGCATGATGCTGGGTATGGTGTTGAGTTTGACCTTTCAAGCAACATGTTATCTGGAGAAATCCTTGAAGAGCAAACCAGCCTCATTCGCTTACAAACATTGAATTTATCCGATAATCTTTTAACCGGAAGAATCCCTTCCAAAATCGGTGATATGGCAATGTTAGAGTCGCTTGATTTGTCCGTGAACCAACTTTCTGGAGAAATTTCTCCAAGCATCTCGAATTTGACATTTCTTAATTATCTGAATTTGTCCTATAACAATCTGATAGGGCAAATTCCAAAAAGCACTCAACTTCAAAGCTTTGATCTGTCCACTTATGCTGGCAATAAACTTTGTGGACCTCCATTGGAAGAGTGTCGCATTACAAATGACGTCGTGCCACCGGTAGCTAATGAGAAACAAGGAGAAGGTCATTTACTTGAAGACAATTGGTTTTATCTGAGCTTGGGGCTTGGATTTGCATTCGGGTTTTGGATTGTTCTTGGTTCATTGCTGTCTAGTGTGCCATGGAGCAATGCATTTTCTCGGTTCCAAAATCGCATTGTGAAGAAGCTCTATGCTGCAATTGTCAAACGTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

274

Amino Acids

30.67

Weight (kDa)

4.63

Isoelectric Point (pI)

33.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_4 PF12799 134 - 173 5.6e-06 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 74
AatII GACGTC 2 cut(s) 188, 615
AccI GTMKAC 1 cut(s) 123
AccII CGCG 1 cut(s) 190
AclI AACGTT 1 cut(s) 814
AclWI GGATC 2 cut(s) 191, 223
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 5 cut(s) 340, 441, 460, 484, 513
AcyI GRCGYC 2 cut(s) 185, 612
AflIII ACRYGT 1 cut(s) 282
AgeI ACCGGT 1 cut(s) 622
AgsI TTSAA 6 cut(s) 35, 276, 305, 340, 536, 662
AjiI CACGTC 1 cut(s) 224
AjnI CCWGG 1 cut(s) 199
AluBI AGCT 5 cut(s) 136, 540, 629, 684, 793
AluI AGCT 5 cut(s) 136, 540, 629, 684, 793
Alw26I GTCTC 1 cut(s) 176
AlwI GGATC 2 cut(s) 191, 223
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 800
ApoI RAATTY 5 cut(s) 340, 441, 460, 484, 513
AsiGI ACCGGT 1 cut(s) 622
Asp700I GAANNNNTTC 1 cut(s) 373
AspS9I GGNCC 1 cut(s) 578
AsuHPI GGTGA 2 cut(s) 136, 398
AvaII GGWCC 1 cut(s) 578
BalI TGGCCA 1 cut(s) 5
BarI GAAGNNNNNNTAC 2 cut(s) 639, 671
BbsI GAAGAC 1 cut(s) 669
BbvI GCAGC 1 cut(s) 787
BciT130I CCWGG 1 cut(s) 201
BcoDI GTCTC 1 cut(s) 176
BfaI CTAG 1 cut(s) 738
BfmI CTRYAG 1 cut(s) 124
BisI GCNGC 1 cut(s) 801
BlsI GCNGC 1 cut(s) 802
Bme1390I CCNGG 1 cut(s) 201
Bme18I GGWCC 1 cut(s) 578
BmgBI CACGTC 1 cut(s) 224
BmgT120I GGNCC 1 cut(s) 578
BmiI GGNNCC 2 cut(s) 98, 770
BmrFI CCNGG 1 cut(s) 201
BmsI GCATC 2 cut(s) 235, 462
BpiI GAAGAC 1 cut(s) 669
BpmI CTGGAG 2 cut(s) 312, 456
BsaAI YACGTR 1 cut(s) 82
BsaHI GRCGYC 2 cut(s) 185, 612
BsaJI CCNNGG 1 cut(s) 746
BsaWI WCCGGW 2 cut(s) 362, 622
Bse118I RCCGGY 1 cut(s) 622
Bse1I ACTGG 1 cut(s) 27
Bse3DI GCAATG 3 cut(s) 402, 728, 760
BseBI CCWGG 1 cut(s) 201
BseDI CCNNGG 1 cut(s) 746
BseMI GCAATG 3 cut(s) 402, 728, 760
BseMII CTCAG 1 cut(s) 671
BseNI ACTGG 1 cut(s) 27
BseXI GCAGC 1 cut(s) 787
BseYI CCCAGC 1 cut(s) 248
Bsh1236I CGCG 1 cut(s) 190
BshFI GGCC 1 cut(s) 5
BshTI ACCGGT 1 cut(s) 622
BsiSI CCGG 2 cut(s) 363, 623
BslFI GGGAC 1 cut(s) 234
BsmAI GTCTC 1 cut(s) 176
BsmBI CGTCTC 1 cut(s) 176
BsmFI GGGAC 1 cut(s) 234
BsmI GAATGC 1 cut(s) 701
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 3 cut(s) 196, 215, 544
Bsp19I CCATGG 1 cut(s) 746
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 672
BspFNI CGCG 1 cut(s) 190
BspLI GGNNCC 2 cut(s) 98, 770
BspPI GGATC 2 cut(s) 191, 223
BspQI GCTCTTC 1 cut(s) 300
BsrDI GCAATG 3 cut(s) 402, 728, 760
BsrFI RCCGGY 1 cut(s) 622
BsrI ACTGG 1 cut(s) 27
BssAI RCCGGY 1 cut(s) 622
BssECI CCNNGG 1 cut(s) 746
BssMI GATC 3 cut(s) 196, 215, 544
BssNI GRCGYC 2 cut(s) 185, 612
BssT1I CCWWGG 1 cut(s) 746
Bst2UI CCWGG 1 cut(s) 201
Bst6I CTCTTC 2 cut(s) 300, 585
BstACI GRCGYC 2 cut(s) 185, 612
BstBAI YACGTR 1 cut(s) 82
BstC8I GCNNGC 1 cut(s) 562
BstDEI CTNAG 1 cut(s) 680
BstDSI CCRYGG 1 cut(s) 746
BstFNI CGCG 1 cut(s) 190
BstKTI GATC 3 cut(s) 199, 218, 547
BstMAI GTCTC 1 cut(s) 176
BstMBI GATC 3 cut(s) 196, 215, 544
BstMWI GCNNNNNNNGC 1 cut(s) 324
BstNI CCWGG 1 cut(s) 201
BstNSI RCATGY 1 cut(s) 286
BstSCI CCNGG 1 cut(s) 199
BstSFI CTRYAG 1 cut(s) 124
BstSNI TACGTA 1 cut(s) 82
BstUI CGCG 1 cut(s) 190
BstV1I GCAGC 1 cut(s) 787
BstV2I GAAGAC 1 cut(s) 669
BstXI CCANNNNNNTGG 1 cut(s) 434
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 746
BtrI CACGTC 1 cut(s) 224
BtsIMutI CAGTG 1 cut(s) 241
Cac8I GCNNGC 1 cut(s) 562
Cfr10I RCCGGY 1 cut(s) 622
Cfr13I GGNCC 1 cut(s) 578
CspAI ACCGGT 1 cut(s) 622
CviAII CATG 3 cut(s) 242, 283, 747
CviJI RGCY 9 cut(s) 5, 136, 164, 318, 540, 629, 684, 691, 793
CviKI_1 RGCY 9 cut(s) 5, 136, 164, 318, 540, 629, 684, 691, 793
DdeI CTNAG 1 cut(s) 680
DpnI GATC 3 cut(s) 198, 217, 546
DpnII GATC 3 cut(s) 196, 215, 544
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 300, 585
EarI CTCTTC 2 cut(s) 300, 585
Eco105I TACGTA 1 cut(s) 82
Eco130I CCWWGG 1 cut(s) 746
Eco47I GGWCC 1 cut(s) 578
EcoRII CCWGG 1 cut(s) 199
EcoT14I CCWWGG 1 cut(s) 746
EcoT22I ATGCAT 1 cut(s) 760
ErhI CCWWGG 1 cut(s) 746
Esp3I CGTCTC 1 cut(s) 176
FaeI CATG 3 cut(s) 245, 286, 750
FalI AAGNNNNNCTT 2 cut(s) 358, 390
FaqI GGGAC 1 cut(s) 234
FatI CATG 3 cut(s) 241, 282, 746
FblI GTMKAC 1 cut(s) 123
Fnu4HI GCNGC 1 cut(s) 801
Fsp4HI GCNGC 1 cut(s) 801
FspBI CTAG 1 cut(s) 738
GluI GCNGC 1 cut(s) 801
GsaI CCCAGC 1 cut(s) 252
GsuI CTGGAG 2 cut(s) 312, 456
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 363, 623
Hin1I GRCGYC 2 cut(s) 185, 612
Hin1II CATG 3 cut(s) 245, 286, 750
HindIII AAGCTT 1 cut(s) 538
HinfI GANTC 2 cut(s) 369, 404
HpaII CCGG 2 cut(s) 363, 623
HphI GGTGA 2 cut(s) 136, 398
Hpy166II GTNNAC 4 cut(s) 124, 424, 552, 578
Hpy188I TCNGA 4 cut(s) 349, 483, 504, 681
Hpy188III TCNNGA 5 cut(s) 59, 219, 291, 435, 457
Hpy8I GTNNAC 4 cut(s) 124, 424, 552, 578
Hpy99I CGWCG 2 cut(s) 190, 617
HpyAV CCTTC 2 cut(s) 384, 641
HpyCH4IV ACGT 6 cut(s) 81, 185, 205, 223, 612, 814
HpyCH4V TGCA 4 cut(s) 107, 701, 758, 803
HpyF10VI GCNNNNNNNGC 1 cut(s) 324
HpyF3I CTNAG 1 cut(s) 680
HpySE526I ACGT 6 cut(s) 81, 185, 205, 223, 612, 814
Hsp92I GRCGYC 2 cut(s) 185, 612
Hsp92II CATG 3 cut(s) 245, 286, 750
Kzo9I GATC 3 cut(s) 196, 215, 544
LguI GCTCTTC 1 cut(s) 300
LmnI GCTCC 1 cut(s) 750
Lsp1109I GCAGC 1 cut(s) 787
LweI GCATC 2 cut(s) 235, 462
MaeI CTAG 1 cut(s) 738
MaeII ACGT 6 cut(s) 81, 185, 205, 223, 612, 814
MaeIII GTNAC 1 cut(s) 224
MalI GATC 3 cut(s) 198, 217, 546
MboI GATC 3 cut(s) 196, 215, 544
MboII GAAGA 5 cut(s) 317, 378, 602, 674, 799
MfeI CAATTG 2 cut(s) 667, 804
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 8 cut(s) 340, 441, 460, 475, 484, 513, 667, 804
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 413
MnlI CCTC 3 cut(s) 154, 329, 591
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 760
MroXI GAANNNNTTC 1 cut(s) 373
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 359, 474, 820
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 363, 623
MspR9I CCNGG 1 cut(s) 201
MunI CAATTG 2 cut(s) 667, 804
Mva1269I GAATGC 1 cut(s) 701
MvaI CCWGG 1 cut(s) 201
MvnI CGCG 1 cut(s) 190
MwoI GCNNNNNNNGC 1 cut(s) 324
NcoI CCATGG 1 cut(s) 746
NdeII GATC 3 cut(s) 196, 215, 544
NlaIII CATG 3 cut(s) 245, 286, 750
NlaIV GGNNCC 2 cut(s) 98, 770
NmuCI GTSAC 1 cut(s) 224
NsiI ATGCAT 1 cut(s) 760
NspI RCATGY 1 cut(s) 286
PciI ACATGT 1 cut(s) 282
PciSI GCTCTTC 1 cut(s) 300
PctI GAATGC 1 cut(s) 701
PdmI GAANNNNTTC 1 cut(s) 373
PfeI GAWTC 1 cut(s) 369
PfoI TCCNGGA 1 cut(s) 199
PinAI ACCGGT 1 cut(s) 622
PkrI GCNGC 1 cut(s) 802
PleI GAGTC 1 cut(s) 412
PpsI GAGTC 1 cut(s) 412
Ppu21I YACGTR 1 cut(s) 82
PscI ACATGT 1 cut(s) 282
PsiI TTATAA 1 cut(s) 74
Psp1406I AACGTT 1 cut(s) 814
Psp6I CCWGG 1 cut(s) 199
PspFI CCCAGC 1 cut(s) 248
PspGI CCWGG 1 cut(s) 199
PspN4I GGNNCC 2 cut(s) 98, 770
PspPI GGNCC 1 cut(s) 578
SapI GCTCTTC 1 cut(s) 300
SaqAI TTAA 3 cut(s) 359, 474, 820
SatI GCNGC 1 cut(s) 801
Sau3AI GATC 3 cut(s) 196, 215, 544
Sau96I GGNCC 1 cut(s) 578
SchI GAGTC 1 cut(s) 413
ScrFI CCNGG 1 cut(s) 201
SfaNI GCATC 2 cut(s) 235, 462
SfcI CTRYAG 1 cut(s) 124
SinI GGWCC 1 cut(s) 578
SnaBI TACGTA 1 cut(s) 82
Sse9I AATT 8 cut(s) 340, 441, 460, 475, 484, 513, 667, 804
SspMI CTAG 1 cut(s) 738
StyD4I CCNGG 1 cut(s) 199
StyI CCWWGG 1 cut(s) 746
TaiI ACGT 6 cut(s) 84, 188, 208, 226, 615, 817
TaqI TCGA 2 cut(s) 195, 458
TasI AATT 8 cut(s) 340, 441, 460, 475, 484, 513, 667, 804
TfiI GAWTC 1 cut(s) 369
Tru1I TTAA 3 cut(s) 359, 474, 820
Tru9I TTAA 3 cut(s) 359, 474, 820
TscAI CASTG 1 cut(s) 241
TseFI GTSAC 1 cut(s) 224
TseI GCWGC 1 cut(s) 800
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 2 cut(s) 55, 717
TspGWI ACGGA 1 cut(s) 409
TspRI CASTG 1 cut(s) 241
VpaK11BI GGWCC 1 cut(s) 578
XapI RAATTY 5 cut(s) 340, 441, 460, 484, 513
XceI RCATGY 1 cut(s) 286
XmiI GTMKAC 1 cut(s) 123
XmnI GAANNNNTTC 1 cut(s) 373
XspI CTAG 1 cut(s) 738
ZraI GACGTC 2 cut(s) 186, 613
Zsp2I ATGCAT 1 cut(s) 760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.