Prupe.6G311600_v2.0.a1

regulation of response to stimulus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000281
Physical Location & Seq
Forward (+)
27915405 .. 27915821
417 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G311600.1

Sequence Viewer

Length: 417 bp
ATGGACAAAGCCATGAGAATTGTTTCAGTGTTCAGATTTCTAAGCGTTGCAACCATTACTACCATTAGCATATGCAATGGAAATTTGGGTGTGCCTTGTGAACAAAATGAGAGACAAGCACTTCTAATGTTCAAGCAAGATCTTAAGGATCCTTCAAATAGGCTTTTATCTTGGGTTGGTGAGGGCGATTGTTGGAATTGGACTGGAGTTGTTTGCGACAATTTAACCGGTCATGTCCGTGAGCTGCACCTTGGAAATTATTATTCAGATGAGTATCTGAATTACAGTTTGTATCAAGAAAACTCTTTGGGTGGCAAGGTAAATTCTTCTCTACTAAATTTAAAGCGTCTGAGCTACATGGACCTTAGCAACAGTGATTTTGGAGGAATACAGATTCCTAGCTTCTTAGATTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_6 LRR_8

Protein Analysis

139

Amino Acids

15.57

Weight (kDa)

5.01

Isoelectric Point (pI)

22.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 143, 156
AcsI RAATTY 3 cut(s) 82, 322, 337
AflII CTTAAG 1 cut(s) 143
AgeI ACCGGT 1 cut(s) 227
AgsI TTSAA 2 cut(s) 133, 156
AluBI AGCT 3 cut(s) 244, 354, 402
AluI AGCT 3 cut(s) 244, 354, 402
Alw26I GTCTC 1 cut(s) 106
AlwI GGATC 2 cut(s) 143, 156
ApeKI GCWGC 1 cut(s) 244
ApoI RAATTY 3 cut(s) 82, 322, 337
AsiGI ACCGGT 1 cut(s) 227
Asp700I GAANNNNTTC 1 cut(s) 22
AspS9I GGNCC 1 cut(s) 361
AsuHPI GGTGA 1 cut(s) 191
AvaII GGWCC 1 cut(s) 361
BamHI GGATCC 1 cut(s) 148
BbvI GCAGC 1 cut(s) 231
BcoDI GTCTC 1 cut(s) 106
BfaI CTAG 2 cut(s) 399, 415
BfrI CTTAAG 1 cut(s) 143
BglII AGATCT 1 cut(s) 139
BisI GCNGC 1 cut(s) 245
BlsI GCNGC 1 cut(s) 246
Bme18I GGWCC 1 cut(s) 361
BmgT120I GGNCC 1 cut(s) 361
BmiI GGNNCC 1 cut(s) 150
BpmI CTGGAG 1 cut(s) 225
Bpu10I CCTNAGC 1 cut(s) 365
BsaBI GATNNNNATC 1 cut(s) 273
BsaJI CCNNGG 1 cut(s) 250
BsaWI WCCGGW 1 cut(s) 227
Bse118I RCCGGY 1 cut(s) 227
Bse1I ACTGG 1 cut(s) 208
Bse3DI GCAATG 1 cut(s) 82
Bse8I GATNNNNATC 1 cut(s) 273
BseDI CCNNGG 1 cut(s) 250
BseJI GATNNNNATC 1 cut(s) 273
BseMI GCAATG 1 cut(s) 82
BseMII CTCAG 1 cut(s) 341
BseNI ACTGG 1 cut(s) 208
BseXI GCAGC 1 cut(s) 231
BsgI GTGCAG 1 cut(s) 230
BshTI ACCGGT 1 cut(s) 227
BsiSI CCGG 1 cut(s) 228
BsmAI GTCTC 1 cut(s) 106
Bsp143I GATC 2 cut(s) 139, 148
BspCNI CTCAG 1 cut(s) 342
BspLI GGNNCC 1 cut(s) 150
BspPI GGATC 2 cut(s) 143, 156
BspTI CTTAAG 1 cut(s) 143
BsrDI GCAATG 1 cut(s) 82
BsrFI RCCGGY 1 cut(s) 227
BsrI ACTGG 1 cut(s) 208
BssAI RCCGGY 1 cut(s) 227
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 2 cut(s) 139, 148
BssT1I CCWWGG 1 cut(s) 250
Bst4CI ACNGT 2 cut(s) 287, 374
BstAFI CTTAAG 1 cut(s) 143
BstDEI CTNAG 4 cut(s) 41, 350, 365, 406
BstKTI GATC 2 cut(s) 142, 151
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 2 cut(s) 139, 148
BstV1I GCAGC 1 cut(s) 231
BstX2I RGATCY 2 cut(s) 139, 148
BstYI RGATCY 2 cut(s) 139, 148
BtsIMutI CAGTG 2 cut(s) 33, 379
Cfr10I RCCGGY 1 cut(s) 227
Cfr13I GGNCC 1 cut(s) 361
CseI GACGC 1 cut(s) 335
CspAI ACCGGT 1 cut(s) 227
CviAII CATG 3 cut(s) 13, 233, 358
CviJI RGCY 5 cut(s) 11, 163, 244, 354, 402
CviKI_1 RGCY 5 cut(s) 11, 163, 244, 354, 402
DdeI CTNAG 4 cut(s) 41, 350, 365, 406
DpnI GATC 2 cut(s) 141, 150
DpnII GATC 2 cut(s) 139, 148
DraI TTTAAA 1 cut(s) 342
Eco130I CCWWGG 1 cut(s) 250
Eco47I GGWCC 1 cut(s) 361
EcoT14I CCWWGG 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 250
FaeI CATG 3 cut(s) 16, 236, 361
FaiI YATR 5 cut(s) 14, 71, 73, 234, 359
FatI CATG 3 cut(s) 12, 232, 357
FauNDI CATATG 1 cut(s) 71
Fnu4HI GCNGC 1 cut(s) 245
Fsp4HI GCNGC 1 cut(s) 245
FspBI CTAG 2 cut(s) 399, 415
GluI GCNGC 1 cut(s) 245
GsuI CTGGAG 1 cut(s) 225
HapII CCGG 1 cut(s) 228
HgaI GACGC 1 cut(s) 335
Hin1II CATG 3 cut(s) 16, 236, 361
HinfI GANTC 2 cut(s) 394, 410
HpaII CCGG 1 cut(s) 228
HphI GGTGA 1 cut(s) 191
Hpy166II GTNNAC 1 cut(s) 101
Hpy188I TCNGA 4 cut(s) 35, 268, 279, 351
Hpy188III TCNNGA 1 cut(s) 296
Hpy8I GTNNAC 1 cut(s) 101
HpyAV CCTTC 1 cut(s) 162
HpyCH4III ACNGT 2 cut(s) 287, 374
HpyCH4V TGCA 3 cut(s) 50, 75, 247
HpyF3I CTNAG 4 cut(s) 41, 350, 365, 406
Hsp92II CATG 3 cut(s) 16, 236, 361
Kzo9I GATC 2 cut(s) 139, 148
LpnPI CCDG 2 cut(s) 189, 241
Lsp1109I GCAGC 1 cut(s) 231
MaeI CTAG 2 cut(s) 399, 415
MalI GATC 2 cut(s) 141, 150
MboI GATC 2 cut(s) 139, 148
MboII GAAGA 1 cut(s) 318
MflI RGATCY 2 cut(s) 139, 148
MluCI AATT 8 cut(s) 18, 82, 196, 220, 256, 280, 322, 337
MmeI TCCRAC 1 cut(s) 173
MnlI CCTC 2 cut(s) 175, 377
MroXI GAANNNNTTC 1 cut(s) 22
MseI TTAA 3 cut(s) 144, 224, 341
MslI CAYNNNNRTG 1 cut(s) 237
MspCI CTTAAG 1 cut(s) 143
MspI CCGG 1 cut(s) 228
NdeI CATATG 1 cut(s) 71
NdeII GATC 2 cut(s) 139, 148
NlaIII CATG 3 cut(s) 16, 236, 361
NlaIV GGNNCC 1 cut(s) 150
PdmI GAANNNNTTC 1 cut(s) 22
PfeI GAWTC 2 cut(s) 394, 410
PinAI ACCGGT 1 cut(s) 227
PkrI GCNGC 1 cut(s) 246
PspN4I GGNNCC 1 cut(s) 150
PspPI GGNCC 1 cut(s) 361
PsuI RGATCY 2 cut(s) 139, 148
RseI CAYNNNNRTG 1 cut(s) 237
SaqAI TTAA 3 cut(s) 144, 224, 341
SatI GCNGC 1 cut(s) 245
Sau3AI GATC 2 cut(s) 139, 148
Sau96I GGNCC 1 cut(s) 361
SetI ASST 6 cut(s) 246, 252, 321, 356, 366, 404
SinI GGWCC 1 cut(s) 361
SmiMI CAYNNNNRTG 1 cut(s) 237
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
Sse9I AATT 8 cut(s) 18, 82, 196, 220, 256, 280, 322, 337
SspMI CTAG 2 cut(s) 399, 415
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 2 cut(s) 287, 374
TasI AATT 8 cut(s) 18, 82, 196, 220, 256, 280, 322, 337
TfiI GAWTC 2 cut(s) 394, 410
Tru1I TTAA 3 cut(s) 144, 224, 341
Tru9I TTAA 3 cut(s) 144, 224, 341
TscAI CASTG 2 cut(s) 33, 379
TseI GCWGC 1 cut(s) 244
TspGWI ACGGA 1 cut(s) 227
TspRI CASTG 2 cut(s) 33, 379
Vha464I CTTAAG 1 cut(s) 143
VpaK11BI GGWCC 1 cut(s) 361
XapI RAATTY 3 cut(s) 82, 322, 337
XmnI GAANNNNTTC 1 cut(s) 22
XspI CTAG 2 cut(s) 399, 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.