MD08G1238300.v1.1

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Forward (+)
30539670 .. 30540242
573 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1238300.v1.1.491

Sequence Viewer

Length: 573 bp
ATGTTTCCAAAATATGACATCCATGGCCACTACCTTTTCAAGCGAAGGAGATACCAGTATCGAATCTACATAGAGAATGCATTTTTGGGAACCAAAGCTAGAGAAGTGAAATATAACATAGTGCTTGGTTTGATAATGAGCTTGGACATTTCAAGCAACATGATATTTGAAGAAATTCCTAAAGAGCTGACCAGCCTCATTTGTTTGCAATCGATGAACTTATCCAATAATCTTCACACGGGAAGAATCCCTTCCAAGATCAATGATATGGGATCATTAGAATCACTTGATTACTACGAGAACCAACTTTCTGGTGAAATATCTCCAAGCATCTCGAATTTGACATTTCTCCATTATTTGAATTTGTCCTATAACAATATGATAGCGCAGATGCCAAAAAGCATTAAACTTCAAAGCTTTGATCTGTCCAGTTATGCTGGCAATAAACTTTGTGAAGCTCCATTGGAAGATCGTTGTAGTACAAATGAGGCCATGCCATCAATAGGTTCTAACTTCTATCTAATGAGAAACACAAAGCAGGTCATTTACTTGATGATGGTGGATTCTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

191

Amino Acids

21.94

Weight (kDa)

6.9

Isoelectric Point (pI)

56.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_4 PF12799 92 - 131 9.9e-06 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 529
AclWI GGATC 1 cut(s) 280
AcoI YGGCCR 1 cut(s) 25
AcsI RAATTY 3 cut(s) 174, 337, 361
AfaI GTAC 1 cut(s) 481
AfiI CCNNNNNNNGG 1 cut(s) 503
AgsI TTSAA 5 cut(s) 40, 153, 170, 361, 413
AjuI GAANNNNNNNTTGG 2 cut(s) 68, 100
AluBI AGCT 5 cut(s) 98, 141, 187, 417, 458
AluI AGCT 5 cut(s) 98, 141, 187, 417, 458
AlwI GGATC 1 cut(s) 280
AoxI GGCC 2 cut(s) 25, 489
ApoI RAATTY 3 cut(s) 174, 337, 361
Asp700I GAANNNNTTC 2 cut(s) 174, 250
AspLEI GCGC 1 cut(s) 388
AsuHPI GGTGA 1 cut(s) 326
BalI TGGCCA 1 cut(s) 27
BccI CCATC 2 cut(s) 505, 550
BfaI CTAG 1 cut(s) 99
BfuAI ACCTGC 1 cut(s) 529
BmiI GGNNCC 1 cut(s) 91
BmsI GCATC 2 cut(s) 339, 381
Bsa29I ATCGAT 1 cut(s) 212
BsaJI CCNNGG 1 cut(s) 22
Bsc4I CCNNNNNNNGG 1 cut(s) 503
Bse1I ACTGG 2 cut(s) 55, 429
BseCI ATCGAT 1 cut(s) 212
BseDI CCNNGG 1 cut(s) 22
BseGI GGATG 1 cut(s) 18
BseLI CCNNNNNNNGG 1 cut(s) 503
BseNI ACTGG 2 cut(s) 55, 429
BshFI GGCC 2 cut(s) 27, 491
BshVI ATCGAT 1 cut(s) 212
BslI CCNNNNNNNGG 1 cut(s) 503
BsmI GAATGC 1 cut(s) 82
BsnI GGCC 2 cut(s) 27, 491
Bsp143I GATC 4 cut(s) 258, 272, 421, 469
Bsp19I CCATGG 1 cut(s) 22
BspANI GGCC 2 cut(s) 27, 491
BspDI ATCGAT 1 cut(s) 212
BspLI GGNNCC 1 cut(s) 91
BspMI ACCTGC 1 cut(s) 529
BspPI GGATC 1 cut(s) 280
BsrI ACTGG 2 cut(s) 55, 429
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 4 cut(s) 258, 272, 421, 469
BssT1I CCWWGG 1 cut(s) 22
BstC8I GCNNGC 1 cut(s) 439
BstDSI CCRYGG 1 cut(s) 22
BstF5I GGATG 1 cut(s) 18
BstHHI GCGC 1 cut(s) 388
BstKTI GATC 4 cut(s) 261, 275, 424, 472
BstMBI GATC 4 cut(s) 258, 272, 421, 469
BstXI CCANNNNNNTGG 1 cut(s) 311
Bsu15I ATCGAT 1 cut(s) 212
BsuRI GGCC 2 cut(s) 27, 491
BsuTUI ATCGAT 1 cut(s) 212
BtgI CCRYGG 1 cut(s) 22
BtsCI GGATG 1 cut(s) 18
BveI ACCTGC 1 cut(s) 529
Cac8I GCNNGC 1 cut(s) 439
CfoI GCGC 1 cut(s) 388
ClaI ATCGAT 1 cut(s) 212
Csp6I GTAC 1 cut(s) 480
CviAII CATG 3 cut(s) 23, 160, 493
CviJI RGCY 8 cut(s) 27, 98, 141, 187, 195, 417, 458, 491
CviKI_1 RGCY 8 cut(s) 27, 98, 141, 187, 195, 417, 458, 491
CviQI GTAC 1 cut(s) 480
DpnI GATC 4 cut(s) 260, 274, 423, 471
DpnII GATC 4 cut(s) 258, 272, 421, 469
EaeI YGGCCR 1 cut(s) 25
Eco130I CCWWGG 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 22
EcoT22I ATGCAT 1 cut(s) 82
ErhI CCWWGG 1 cut(s) 22
FaeI CATG 3 cut(s) 26, 163, 496
FalI AAGNNNNNCTT 2 cut(s) 235, 267
FatI CATG 3 cut(s) 22, 159, 492
FokI GGATG 1 cut(s) 5
FspBI CTAG 1 cut(s) 99
GlaI GCGC 1 cut(s) 387
HaeIII GGCC 2 cut(s) 27, 491
HhaI GCGC 1 cut(s) 388
Hin1II CATG 3 cut(s) 26, 163, 496
Hin6I GCGC 1 cut(s) 386
HinP1I GCGC 1 cut(s) 386
HindIII AAGCTT 1 cut(s) 415
HinfI GANTC 4 cut(s) 63, 246, 281, 563
HphI GGTGA 1 cut(s) 326
Hpy188III TCNNGA 1 cut(s) 334
HpyAV CCTTC 2 cut(s) 39, 261
HpyCH4V TGCA 2 cut(s) 80, 208
Hsp92II CATG 3 cut(s) 26, 163, 496
HspAI GCGC 1 cut(s) 386
Kzo9I GATC 4 cut(s) 258, 272, 421, 469
LmnI GCTCC 1 cut(s) 463
LpnPI CCDG 6 cut(s) 68, 205, 297, 423, 442, 524
LweI GCATC 2 cut(s) 339, 381
MaeI CTAG 1 cut(s) 99
MalI GATC 4 cut(s) 260, 274, 423, 471
MboI GATC 4 cut(s) 258, 272, 421, 469
MboII GAAGA 4 cut(s) 182, 224, 255, 479
MlsI TGGCCA 1 cut(s) 27
MluCI AATT 3 cut(s) 174, 337, 361
MluNI TGGCCA 1 cut(s) 27
MnlI CCTC 2 cut(s) 206, 481
Mox20I TGGCCA 1 cut(s) 27
Mph1103I ATGCAT 1 cut(s) 82
MroXI GAANNNNTTC 2 cut(s) 174, 250
MscI TGGCCA 1 cut(s) 27
MseI TTAA 1 cut(s) 405
Msp20I TGGCCA 1 cut(s) 27
Mva1269I GAATGC 1 cut(s) 82
NcoI CCATGG 1 cut(s) 22
NdeII GATC 4 cut(s) 258, 272, 421, 469
NlaIII CATG 3 cut(s) 26, 163, 496
NlaIV GGNNCC 1 cut(s) 91
NsiI ATGCAT 1 cut(s) 82
PctI GAATGC 1 cut(s) 82
PdmI GAANNNNTTC 2 cut(s) 174, 250
PfeI GAWTC 4 cut(s) 63, 246, 281, 563
PspN4I GGNNCC 1 cut(s) 91
RsaI GTAC 1 cut(s) 481
RsaNI GTAC 1 cut(s) 480
SaqAI TTAA 1 cut(s) 405
Sau3AI GATC 4 cut(s) 258, 272, 421, 469
SetI ASST 8 cut(s) 36, 100, 143, 189, 419, 460, 508, 543
SfaNI GCATC 2 cut(s) 339, 381
Sse9I AATT 3 cut(s) 174, 337, 361
SspMI CTAG 1 cut(s) 99
StyI CCWWGG 1 cut(s) 22
TaqI TCGA 3 cut(s) 61, 212, 335
TasI AATT 3 cut(s) 174, 337, 361
TatI WGTACW 1 cut(s) 479
TfiI GAWTC 4 cut(s) 63, 246, 281, 563
Tru1I TTAA 1 cut(s) 405
Tru9I TTAA 1 cut(s) 405
TspDTI ATGAA 1 cut(s) 230
XapI RAATTY 3 cut(s) 174, 337, 361
XmnI GAANNNNTTC 2 cut(s) 174, 250
XspI CTAG 1 cut(s) 99
Zsp2I ATGCAT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.