MD15G1414900.v1.1

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
51512027 .. 51512362
336 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1414900.v1.1.491

Sequence Viewer

Length: 336 bp
ATGCTTTCCATGGTCTTGACATCGCTTGTTGATCTTAAATTAGGTTGGAATCAGCTTGAAGGGGAAATCCCAAACTCATTTGGAACTCTTTGTAAGTTGACTTTTGTTGATCTATGGTGGAACAATTTTAGGGGGAGGGTATCAGAAATCTTTGAAAGTTTGTCTGAGTGTATTTCTGGTCAAATAAATCTTTTAGATCTTTCAGATAATTTTTTTTCATGTCATTTATCTGATAAGCTAGGAAGTCTTAAAAATTTACGCTACCTTGATCTTTCATTTAATTCAATATCAGGTTCCATTCCACTGTCCTTGGGCAATCTATCACGCTTAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

112

Amino Acids

12.48

Weight (kDa)

4.83

Isoelectric Point (pI)

23.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 253
AgsI TTSAA 3 cut(s) 59, 155, 285
AluBI AGCT 2 cut(s) 55, 238
AluI AGCT 2 cut(s) 55, 238
ApoI RAATTY 1 cut(s) 253
BfaI CTAG 1 cut(s) 239
BglII AGATCT 1 cut(s) 196
BmiI GGNNCC 1 cut(s) 295
BsaJI CCNNGG 2 cut(s) 9, 309
BseDI CCNNGG 2 cut(s) 9, 309
BseMII CTCAG 1 cut(s) 156
Bsp143I GATC 4 cut(s) 31, 109, 196, 268
Bsp19I CCATGG 1 cut(s) 9
BspCNI CTCAG 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 295
BssECI CCNNGG 2 cut(s) 9, 309
BssMI GATC 4 cut(s) 31, 109, 196, 268
BssT1I CCWWGG 2 cut(s) 9, 309
Bst4CI ACNGT 1 cut(s) 306
BstDEI CTNAG 2 cut(s) 165, 328
BstDSI CCRYGG 1 cut(s) 9
BstKTI GATC 4 cut(s) 34, 112, 199, 271
BstMBI GATC 4 cut(s) 31, 109, 196, 268
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BtgI CCRYGG 1 cut(s) 9
BtgZI GCGATG 1 cut(s) 6
BtsIMutI CAGTG 1 cut(s) 302
CspCI CAANNNNNGTGG 2 cut(s) 291, 326
CviAII CATG 2 cut(s) 10, 219
CviJI RGCY 2 cut(s) 55, 238
CviKI_1 RGCY 2 cut(s) 55, 238
DdeI CTNAG 2 cut(s) 165, 328
DpnI GATC 4 cut(s) 33, 111, 198, 270
DpnII GATC 4 cut(s) 31, 109, 196, 268
Eco130I CCWWGG 2 cut(s) 9, 309
EcoT14I CCWWGG 2 cut(s) 9, 309
ErhI CCWWGG 2 cut(s) 9, 309
FaeI CATG 2 cut(s) 13, 222
FaiI YATR 3 cut(s) 11, 115, 220
FatI CATG 2 cut(s) 9, 218
FspBI CTAG 1 cut(s) 239
Hin1II CATG 2 cut(s) 13, 222
HincII GTYRAC 1 cut(s) 99
HindII GTYRAC 1 cut(s) 99
HinfI GANTC 1 cut(s) 49
Hpy166II GTNNAC 1 cut(s) 99
Hpy188I TCNGA 4 cut(s) 145, 166, 205, 232
Hpy188III TCNNGA 1 cut(s) 16
Hpy8I GTNNAC 1 cut(s) 99
HpyAV CCTTC 1 cut(s) 53
HpyCH4III ACNGT 1 cut(s) 306
HpyF3I CTNAG 2 cut(s) 165, 328
Hsp92II CATG 2 cut(s) 13, 222
Kzo9I GATC 4 cut(s) 31, 109, 196, 268
LpnPI CCDG 2 cut(s) 162, 276
MaeI CTAG 1 cut(s) 239
MalI GATC 4 cut(s) 33, 111, 198, 270
MboI GATC 4 cut(s) 31, 109, 196, 268
MflI RGATCY 1 cut(s) 196
MluCI AATT 5 cut(s) 38, 124, 208, 253, 280
MmeI TCCRAC 1 cut(s) 26
MnlI CCTC 1 cut(s) 129
MseI TTAA 3 cut(s) 36, 249, 279
NcoI CCATGG 1 cut(s) 9
NdeII GATC 4 cut(s) 31, 109, 196, 268
NlaIII CATG 2 cut(s) 13, 222
NlaIV GGNNCC 1 cut(s) 295
PfeI GAWTC 1 cut(s) 49
PspN4I GGNNCC 1 cut(s) 295
PsuI RGATCY 1 cut(s) 196
SaqAI TTAA 3 cut(s) 36, 249, 279
Sau3AI GATC 4 cut(s) 31, 109, 196, 268
SetI ASST 5 cut(s) 46, 57, 240, 267, 295
Sse9I AATT 5 cut(s) 38, 124, 208, 253, 280
SspMI CTAG 1 cut(s) 239
StyI CCWWGG 2 cut(s) 9, 309
TaaI ACNGT 1 cut(s) 306
TasI AATT 5 cut(s) 38, 124, 208, 253, 280
TfiI GAWTC 1 cut(s) 49
Tru1I TTAA 3 cut(s) 36, 249, 279
Tru9I TTAA 3 cut(s) 36, 249, 279
TscAI CASTG 1 cut(s) 309
TspDTI ATGAA 2 cut(s) 207, 264
TspRI CASTG 1 cut(s) 309
XapI RAATTY 1 cut(s) 253
XspI CTAG 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.