MD15G1414600.v1.1

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000281
Physical Location & Seq
Forward (+)
51462019 .. 51462681
663 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1414600.v1.1.491

Sequence Viewer

Length: 663 bp
ATGAGAGTTGTTTCACTAGTCAGGTTTCTATGCATTGCGTCTATTACAGTTAGCTTATGCAAAGGAAACCTGAATGTGCCTTGCAAAGAAAATGAGAGACAAACACTTATTATGTTCAAGAAAGATCTTAATGATTCTTCAAATATGCTTTCCTCTTGGGTTGGTGAAGGCGATTGTTGCAACTGGACCGGTGTTGCCTGCGATAATTTAACCGGTCATGTCCATGAGCTCCACCTTGGTGGTAATTACAATCAAGTGACTGGTGAGAAACATGGTTTGGGTGGTAAGGTAAATCCTTCTCTGCTCAATTTAAAGCAACTCAGCTACTTGGACTTAAGCTACAATAATTTTGAAGGACTACAAATTCCTAGCTCTCTAGGTTCTCTTAAAGGTTTAAGATATCTTAACCTCTCATATGCAGGGTTCAACGGAACCATTCCTCATCAGTTGGGAAATCTTTCGAGTCTATGTTATTTGGACCTTTCTGAAAACTTGTTGATGGTCGTGAATCTCAAATGGCTCTCTGGTCTTTCTAAATTGAAACATCTTGACATGAGTCTTGTAAATCTTGTTGGAGAACAATTTAGAAACAGAAATAACATAAATACAGAACTTGAATACTTATACTTTATTACTCAAAAAATTACTTGCAATACAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

221

Amino Acids

24.55

Weight (kDa)

6.98

Isoelectric Point (pI)

19.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 31 - 68 6.2e-13 Leucine rich repeat N-terminal domain
LRR_14 PF23598 99 - 183 9.5e-07 Leucine-rich repeat region
LRR_8 PF13855 131 - 186 2.5e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 363
AflII CTTAAG 1 cut(s) 334
AgeI ACCGGT 2 cut(s) 188, 212
AgsI TTSAA 6 cut(s) 118, 141, 353, 427, 541, 617
AhlI ACTAGT 1 cut(s) 16
AjuI GAANNNNNNNTTGG 2 cut(s) 260, 292
AleI CACNNNNGTG 1 cut(s) 237
AluBI AGCT 5 cut(s) 54, 229, 324, 339, 372
AluI AGCT 5 cut(s) 54, 229, 324, 339, 372
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 1 cut(s) 91
ApoI RAATTY 1 cut(s) 363
AsiGI ACCGGT 2 cut(s) 188, 212
Asp700I GAANNNNTTC 1 cut(s) 457
AspS9I GGNCC 2 cut(s) 186, 478
AsuHPI GGTGA 2 cut(s) 176, 275
AvaII GGWCC 2 cut(s) 186, 478
BanII GRGCYC 1 cut(s) 231
Bbv12I GWGCWC 1 cut(s) 231
BccI CCATC 1 cut(s) 493
BcoDI GTCTC 1 cut(s) 91
BcuI ACTAGT 1 cut(s) 16
BfaI CTAG 3 cut(s) 17, 369, 377
BfrI CTTAAG 1 cut(s) 334
BglII AGATCT 1 cut(s) 124
Bme18I GGWCC 2 cut(s) 186, 478
BmgT120I GGNCC 2 cut(s) 186, 478
BmiI GGNNCC 1 cut(s) 433
BoxI GACNNNNGTC 1 cut(s) 555
BsaJI CCNNGG 1 cut(s) 235
BsaWI WCCGGW 2 cut(s) 188, 212
Bse118I RCCGGY 2 cut(s) 188, 212
Bse1I ACTGG 2 cut(s) 188, 265
Bse3DI GCAATG 1 cut(s) 33
BseDI CCNNGG 1 cut(s) 235
BseMI GCAATG 1 cut(s) 33
BseMII CTCAG 1 cut(s) 334
BseNI ACTGG 2 cut(s) 188, 265
BshTI ACCGGT 2 cut(s) 188, 212
BsiHKAI GWGCWC 1 cut(s) 231
BsiSI CCGG 2 cut(s) 189, 213
BsmAI GTCTC 1 cut(s) 91
Bsp1286I GDGCHC 1 cut(s) 231
Bsp143I GATC 1 cut(s) 124
BspCNI CTCAG 1 cut(s) 333
BspLI GGNNCC 1 cut(s) 433
BspTI CTTAAG 1 cut(s) 334
BsrDI GCAATG 1 cut(s) 33
BsrFI RCCGGY 2 cut(s) 188, 212
BsrI ACTGG 2 cut(s) 188, 265
BssAI RCCGGY 2 cut(s) 188, 212
BssECI CCNNGG 1 cut(s) 235
BssMI GATC 1 cut(s) 124
BssT1I CCWWGG 1 cut(s) 235
Bst4CI ACNGT 1 cut(s) 49
BstAFI CTTAAG 1 cut(s) 334
BstC8I GCNNGC 1 cut(s) 199
BstDEI CTNAG 1 cut(s) 320
BstKTI GATC 1 cut(s) 127
BstMAI GTCTC 1 cut(s) 91
BstMBI GATC 1 cut(s) 124
BstMWI GCNNNNNNNGC 1 cut(s) 177
BstPAI GACNNNNGTC 1 cut(s) 555
BstX2I RGATCY 1 cut(s) 124
BstXI CCANNNNNNTGG 1 cut(s) 239
BstYI RGATCY 1 cut(s) 124
Cac8I GCNNGC 1 cut(s) 199
Cfr10I RCCGGY 2 cut(s) 188, 212
Cfr13I GGNCC 2 cut(s) 186, 478
CseI GACGC 1 cut(s) 27
CspAI ACCGGT 2 cut(s) 188, 212
CviAII CATG 4 cut(s) 218, 224, 272, 553
CviJI RGCY 6 cut(s) 54, 229, 324, 339, 372, 520
CviKI_1 RGCY 6 cut(s) 54, 229, 324, 339, 372, 520
DdeI CTNAG 1 cut(s) 320
DpnI GATC 1 cut(s) 126
DpnII GATC 1 cut(s) 124
DraI TTTAAA 1 cut(s) 312
Ecl136II GAGCTC 1 cut(s) 229
Eco130I CCWWGG 1 cut(s) 235
Eco24I GRGCYC 1 cut(s) 231
Eco32I GATATC 1 cut(s) 401
Eco47I GGWCC 2 cut(s) 186, 478
Eco53kI GAGCTC 1 cut(s) 229
EcoICRI GAGCTC 1 cut(s) 229
EcoRV GATATC 1 cut(s) 401
EcoT14I CCWWGG 1 cut(s) 235
EcoT22I ATGCAT 1 cut(s) 35
EcoT38I GRGCYC 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 235
FaeI CATG 4 cut(s) 221, 227, 275, 556
FatI CATG 4 cut(s) 217, 223, 271, 552
FauNDI CATATG 1 cut(s) 415
FriOI GRGCYC 1 cut(s) 231
FspBI CTAG 3 cut(s) 17, 369, 377
HapII CCGG 2 cut(s) 189, 213
HgaI GACGC 1 cut(s) 27
Hin1II CATG 4 cut(s) 221, 227, 275, 556
HinfI GANTC 4 cut(s) 134, 463, 508, 556
HpaII CCGG 2 cut(s) 189, 213
HphI GGTGA 2 cut(s) 176, 275
Hpy188I TCNGA 1 cut(s) 487
Hpy188III TCNNGA 3 cut(s) 118, 505, 548
HpyAV CCTTC 3 cut(s) 161, 306, 347
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4V TGCA 6 cut(s) 33, 60, 84, 180, 419, 651
HpyF10VI GCNNNNNNNGC 1 cut(s) 177
HpyF3I CTNAG 1 cut(s) 320
Hsp92II CATG 4 cut(s) 221, 227, 275, 556
Kzo9I GATC 1 cut(s) 124
LmnI GCTCC 1 cut(s) 234
LpnPI CCDG 9 cut(s) 7, 83, 169, 202, 211, 226, 246, 405, 510
MaeI CTAG 3 cut(s) 17, 369, 377
MaeIII GTNAC 1 cut(s) 256
MalI GATC 1 cut(s) 126
MboI GATC 1 cut(s) 124
MboII GAAGA 1 cut(s) 129
MflI RGATCY 1 cut(s) 124
MhlI GDGCHC 1 cut(s) 231
MluCI AATT 8 cut(s) 205, 244, 307, 346, 363, 536, 581, 642
MlyI GAGTC 2 cut(s) 472, 565
MmeI TCCRAC 1 cut(s) 553
MnlI CCTC 3 cut(s) 163, 419, 450
Mph1103I ATGCAT 1 cut(s) 35
MroXI GAANNNNTTC 1 cut(s) 457
MseI TTAA 7 cut(s) 129, 209, 311, 335, 387, 395, 405
MslI CAYNNNNRTG 2 cut(s) 222, 237
MspCI CTTAAG 1 cut(s) 334
MspI CCGG 2 cut(s) 189, 213
MwoI GCNNNNNNNGC 1 cut(s) 177
NdeI CATATG 1 cut(s) 415
NdeII GATC 1 cut(s) 124
NlaIII CATG 4 cut(s) 221, 227, 275, 556
NlaIV GGNNCC 1 cut(s) 433
NmuCI GTSAC 1 cut(s) 256
NsiI ATGCAT 1 cut(s) 35
OliI CACNNNNGTG 1 cut(s) 237
PdmI GAANNNNTTC 1 cut(s) 457
PfeI GAWTC 2 cut(s) 134, 508
PinAI ACCGGT 2 cut(s) 188, 212
PleI GAGTC 2 cut(s) 471, 564
PpsI GAGTC 2 cut(s) 471, 564
PshAI GACNNNNGTC 1 cut(s) 555
Psp124BI GAGCTC 1 cut(s) 231
PspN4I GGNNCC 1 cut(s) 433
PspPI GGNCC 2 cut(s) 186, 478
PsuI RGATCY 1 cut(s) 124
RseI CAYNNNNRTG 2 cut(s) 222, 237
SacI GAGCTC 1 cut(s) 231
SaqAI TTAA 7 cut(s) 129, 209, 311, 335, 387, 395, 405
Sau3AI GATC 1 cut(s) 124
Sau96I GGNCC 2 cut(s) 186, 478
SchI GAGTC 2 cut(s) 472, 565
SduI GDGCHC 1 cut(s) 231
SinI GGWCC 2 cut(s) 186, 478
SmiMI CAYNNNNRTG 2 cut(s) 222, 237
SmlI CTYRAG 1 cut(s) 334
SmoI CTYRAG 1 cut(s) 334
SpeI ACTAGT 1 cut(s) 16
Sse9I AATT 8 cut(s) 205, 244, 307, 346, 363, 536, 581, 642
SspMI CTAG 3 cut(s) 17, 369, 377
SstI GAGCTC 1 cut(s) 231
StyI CCWWGG 1 cut(s) 235
TaaI ACNGT 1 cut(s) 49
TaqI TCGA 1 cut(s) 461
TasI AATT 8 cut(s) 205, 244, 307, 346, 363, 536, 581, 642
TfiI GAWTC 2 cut(s) 134, 508
Tru1I TTAA 7 cut(s) 129, 209, 311, 335, 387, 395, 405
Tru9I TTAA 7 cut(s) 129, 209, 311, 335, 387, 395, 405
TseFI GTSAC 1 cut(s) 256
Tsp45I GTSAC 1 cut(s) 256
TspGWI ACGGA 1 cut(s) 444
Vha464I CTTAAG 1 cut(s) 334
VpaK11BI GGWCC 2 cut(s) 186, 478
XapI RAATTY 1 cut(s) 363
XmnI GAANNNNTTC 1 cut(s) 457
XspI CTAG 3 cut(s) 17, 369, 377
Zsp2I ATGCAT 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.