MD01G1165600.v1.1

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000281
Physical Location & Seq
Reverse (-)
26953822 .. 26956641
2820 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1165600.v1.1.491

Sequence Viewer

Length: 2820 bp
ATGGAGAAGCCCATGAGACCTGTTTTGCTTCTTATTATCATGCTTTTAACTATTGCAACGTTTACTGATATCAGTTTATGCAATGGAAATCTGCGTGTGCGTTGCAGGGAAGGTGAGAAACGAGCGCTTCTGATGTTCAAGCAAGGTCTTGAGGATCCTTCAAATCGGCTCTCATCATGGATTAGTGATGGAGACTGTTGCAACTGGACTGGAGTTGTCTGTGATCCCTTAACTGGTCATGTCCGCGAGCTCCGCCTCACTAATCCCAACTTTCAGCGGGATTTCCACTACGCCATTTGGGATTCCTACAACGGTAATACTTGGTTGGGTGGTAAGATAAATACTTCTTTGCTCCATTTGAAGCATCTCAACTATTTGGACTTAAGTTACAACAATTTTCAAGGCATGCAGATTCCTAGCTTCTTGGGGTCTCTTAAAACTTTGAGATACCTTAACCTCTCAGAAGCTGGATTCCGAGGATTAATTCCTCCTCAGTTGGGAAACCTCACGAATCTACATTTTCTCAGTCTCAGTGATAACCTGAAGGTTGAGAATCTCGAATGGATTTCCAGTCTTTTCCACTTGAAATACCTAGACCTGAGTTCTGTTAATGTTAGCAAAGCATCTAATTGGTTGCAAGCAATAAACAAGCTTCCTTTTTTGGTAGAGTTACATATGGTCGACTGTCAACTTGATCACATTCCCCCTCTTCCTATCATAAATTTTACTTCGCTTTCTGTCCTCGATCTTTCCGAGAACAGTTTTGATTCTTTGATGCCTAGGTGGGTTTTCAGTCTTAGAAATTTAACTTCTCTTTATCTCAAAAATTGTGGTTTCCAAGGTACATTTTCTAGCCATCCCAAGGAACCAGATCTTTCATTAGATAATCTGTGTGAGCTGATGGATCTTGATCTGTCATATAACAAATTCAATGGAAATGCATCAGACATCTTTGAAAGCTTGTCTGTGTGTGGTCCAGACCGAATAAAGTCCTTGTCGTTATCGAAAAATAATTTTTCAGGTCATTTAACAGAGCAGGTAGGAGAGTTTAGAAACTTAAGCCACCTTGAGATTTATGCCAATTCAATATCAGGTCCCATCCCAATTTCATTAGGTAACCTATCATGCTTGGAGTTCTTAATCATTTCTGATAATCGGTTTAATGGAACTCTTCCGGAAGTGATTGGTCAACTGAAAATGCTGAGTTATCTGGAGATATCGGATAACCCATTCGAAGGTGTGGTGTCTGAAGCTCATTTTTCCCACCTCACAAAACTGAAGCATTTCATTGCAGCCAGGAACCCATTGACTTTGAAAACAAGTCGAGACTGGCTTCCTCCTTTCCAACTTGAGCGTTTATGGTTGGATTATTGGCATCTAGGGCCTGAATTTCCTGTGTGGCTTCGGACACAAACGCAATTGAAGCTTCTAAGCCTACCCAATACAGAAATTTCAGATACCATTCCGACTTGGTTTTGGAACATATCTTCACAGTTGTGGACTGTAAATCTCTCTAGTAACCAGTTGCATGGTGAGATTCAAGGAATAGTTGGGGGGAGTTTGTTTTCGGTTGACCTGAGTTTTAACCAGTTTAATGGTTCGTTACCTTTGGTTTCCTCCTCAGTATCCTCACTAGATCTTTCCGGCTCATCATTTTCTGGATCTCTCTTCCACTTCTTTTGTGATAGGATGAACGAACCAAAAAACCTTGTCAGCCTTCATCTTAGGGACAATCTTCTCACTGGAGAAATTCCTAATTGTTTGATGAACTGGAAACGGTTGTCAATTTTAAACTTAAACAGCAACAAGCTGACTGGGAACATCCCAAGCTCCATAGGGTACTTAGAGAGTTTGGTATCATTGCATTTGCGCAATAATCATCTATATGGAGAATTACCTTTGTCCATGCAAAACTGTACGGAGTTGTTAGTGGTTAACCTTGGCCAAAATAAGTTTTCCGGAAGCATTCCAACATGGATTGGGACAAGCCTTCCGAATTTGATGATTCTTAACATTCGTTCAAATAAGCTTCAAGGAGACATTCCTCATGAACTCTGTGATCGGAAAACTCTCCAAATCTTGGACCTTGCATACAATAGCCTTTCAGGAGCAATACCGACATGCTTCCAAAATTTCAGTGCCATGGCCACCACGCCAGATGTAAACAAGCCGCTGGGTTTTGCCCCTTTATTTATGGAATCTGTGATAGTGGTGACAAAAGGGAGACAAGACGAATATTATGGGATGTCAACACTTGGGTTGGTCATAGTTATGGACCTTTCAGACAACATGCTATCTGGAGAGATCCCAGAGGAACTAACCAGCCTCACTGGCTTGCAGTCCTTGAATTTATCGAACAATCTTTTGACTGGAAGAATCCCTTCAAAGATTGGTAACATGAAATGGTTACAGTCTATGGATTTATCAATGAACGAACTTGATGGTGAAATTCCCCAAAGCATGAGAAGTTTGACATTTTTGAGTCACTTAAACGTGTCCTACAATAATTTGACAGGAGAAATTCCGAAAAGCACTCAGCTTCAAAGCCTTGATCAGTCTAGCTTCATCGGCAATGAACTTTGTGGAGCTCCCCTCAACACAAATTGCAGCGCAGATAGGATGCCGCCAACAGTTGAGCAAGACGGAGGAGGAGGATACCGTTTACTCGAAGACGAGTGGTTCTGTGTGAGCTTGGGAGTTGGATTCTTCACGGGGTTTTGGATTGTGCTTGGTTCTTTGCTAGTAAACATGCCATGGAGCATTCTTCTTTCACAGTTGCTGAATAGGATAGTGCTTAAACTGTATCATGTATTCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

940

Amino Acids

105.37

Weight (kDa)

5.61

Isoelectric Point (pI)

32.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 38 - 75 2.8e-14 Leucine rich repeat N-terminal domain
LRR_14 PF23598 183 - 359 5.3e-09 Leucine-rich repeat region
LRR_8 PF13855 221 - 277 3.5e-07 Leucine rich repeat
LRR_14 PF23598 331 - 478 7.6e-07 Leucine-rich repeat region
LRR_8 PF13855 569 - 628 7.6e-06 Leucine rich repeat
LRR_14 PF23598 747 - 853 7.4e-08 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1871
Acc36I ACCTGC 1 cut(s) 1027
AccB7I CCANNNNNTGG 1 cut(s) 2080
AccI GTMKAC 1 cut(s) 681
AccII CGCG 1 cut(s) 246
AccIII TCCGGA 2 cut(s) 1174, 1958
AciI CCGC 5 cut(s) 244, 253, 277, 2171, 2624
AclI AACGTT 1 cut(s) 59
AclWI GGATC 6 cut(s) 149, 162, 218, 912, 1669, 2299
AcoI YGGCCR 2 cut(s) 1942, 2145
AcuI CTGAAG 3 cut(s) 563, 1269, 1298
AfaI GTAC 3 cut(s) 844, 1841, 1918
AfeI AGCGCT 1 cut(s) 126
AfiI CCNNNNNNNGG 5 cut(s) 233, 497, 862, 1235, 2080
AflII CTTAAG 2 cut(s) 382, 1057
AflIII ACRYGT 1 cut(s) 2493
AjnI CCWGG 1 cut(s) 1295
AleI CACNNNNGTG 1 cut(s) 1495
Alw21I GWGCWC 2 cut(s) 252, 2590
Alw26I GTCTC 7 cut(s) 10, 186, 435, 533, 1320, 2031, 2218
AlwI GGATC 6 cut(s) 149, 162, 218, 912, 1669, 2299
AlwNI CAGNNNCTG 2 cut(s) 467, 2779
Aor13HI TCCGGA 2 cut(s) 1174, 1958
Aor51HI AGCGCT 1 cut(s) 126
AoxI GGCC 3 cut(s) 1382, 1942, 2145
ApeKI GCWGC 2 cut(s) 1292, 2607
AseI ATTAAT 1 cut(s) 482
Asp700I GAANNNNTTC 2 cut(s) 1283, 2380
AspA2I CCTAGG 1 cut(s) 779
AspLEI GCGC 3 cut(s) 127, 1872, 2612
AspS9I GGNCC 5 cut(s) 974, 1094, 1382, 2083, 2275
AsuHPI GGTGA 4 cut(s) 125, 1544, 2224, 2456
AsuII TTCGAA 1 cut(s) 1233
AvaII GGWCC 4 cut(s) 974, 1094, 2083, 2275
AvrII CCTAGG 1 cut(s) 779
BalI TGGCCA 2 cut(s) 1944, 2147
BamHI GGATCC 1 cut(s) 154
BanII GRGCYC 2 cut(s) 252, 2590
BbsI GAAGAC 1 cut(s) 2676
Bbv12I GWGCWC 2 cut(s) 252, 2590
BbvI GCAGC 2 cut(s) 1304, 2619
BccI CCATC 5 cut(s) 182, 864, 895, 1106, 2435
BciT130I CCWGG 1 cut(s) 1297
BciVI GTATCC 2 cut(s) 1636, 2648
BclI TGATCA 2 cut(s) 694, 2551
BcoDI GTCTC 7 cut(s) 10, 186, 435, 533, 1320, 2031, 2218
BfaI CTAG 9 cut(s) 417, 593, 780, 852, 1379, 1515, 1634, 2559, 2741
BfoI RGCGCY 1 cut(s) 128
BfrI CTTAAG 2 cut(s) 382, 1057
BfuAI ACCTGC 1 cut(s) 1027
BfuI GTATCC 2 cut(s) 1636, 2648
BglI GCCNNNNNGGC 1 cut(s) 2331
BglII AGATCT 2 cut(s) 871, 1636
BisI GCNGC 4 cut(s) 1293, 2171, 2608, 2624
BlnI CCTAGG 1 cut(s) 779
BlsI GCNGC 4 cut(s) 1294, 2172, 2609, 2625
Bme1390I CCNGG 1 cut(s) 1297
Bme18I GGWCC 4 cut(s) 974, 1094, 2083, 2275
BmgT120I GGNCC 5 cut(s) 974, 1094, 1382, 2083, 2275
BmiI GGNNCC 4 cut(s) 156, 867, 1096, 1301
BmrFI CCNGG 1 cut(s) 1297
BmrI ACTGGG 1 cut(s) 1824
BmsI GCATC 6 cut(s) 373, 632, 765, 950, 1384, 2610
BmuI ACTGGG 1 cut(s) 1824
BpiI GAAGAC 1 cut(s) 2676
BplI GAGNNNNNCTC 2 cut(s) 2577, 2609
BpmI CTGGAG 4 cut(s) 231, 1232, 1764, 2319
Bpu14I TTCGAA 1 cut(s) 1233
BpuEI CTTGAG 3 cut(s) 170, 1088, 1370
BsaBI GATNNNNATC 1 cut(s) 909
BsaI GGTCTC 2 cut(s) 10, 435
BsaJI CCNNGG 7 cut(s) 475, 779, 838, 861, 1939, 2142, 2753
BsaWI WCCGGW 2 cut(s) 1174, 1958
Bsc4I CCNNNNNNNGG 5 cut(s) 233, 497, 862, 1235, 2080
Bse3DI GCAATG 4 cut(s) 88, 1287, 1859, 2578
Bse8I GATNNNNATC 1 cut(s) 909
BseAI TCCGGA 2 cut(s) 1174, 1958
BseBI CCWGG 1 cut(s) 1297
BseDI CCNNGG 7 cut(s) 475, 779, 838, 861, 1939, 2142, 2753
BseGI GGATG 6 cut(s) 856, 1098, 1695, 1821, 2250, 2625
BseJI GATNNNNATC 1 cut(s) 909
BseLI CCNNNNNNNGG 5 cut(s) 233, 497, 862, 1235, 2080
BseMI GCAATG 4 cut(s) 88, 1287, 1859, 2578
BseMII CTCAG 9 cut(s) 474, 506, 538, 544, 590, 1193, 1568, 1635, 2549
BseRI GAGGAG 4 cut(s) 480, 1609, 2661, 2664
BseXI GCAGC 2 cut(s) 1304, 2619
BseYI CCCAGC 1 cut(s) 2173
Bsh1236I CGCG 1 cut(s) 246
BshFI GGCC 3 cut(s) 1384, 1944, 2147
BsiHKAI GWGCWC 2 cut(s) 252, 2590
BsiSI CCGG 3 cut(s) 1175, 1644, 1959
BslFI GGGAC 3 cut(s) 1080, 1742, 1996
BslI CCNNNNNNNGG 5 cut(s) 233, 497, 862, 1235, 2080
BsmAI GTCTC 7 cut(s) 10, 186, 435, 533, 1320, 2031, 2218
BsmFI GGGAC 3 cut(s) 1080, 1742, 1996
BsmI GAATGC 2 cut(s) 1965, 2760
BsnI GGCC 3 cut(s) 1384, 1944, 2147
Bso31I GGTCTC 2 cut(s) 10, 435
Bsp119I TTCGAA 1 cut(s) 1233
Bsp1286I GDGCHC 2 cut(s) 252, 2590
Bsp13I TCCGGA 2 cut(s) 1174, 1958
Bsp19I CCATGG 2 cut(s) 2142, 2753
BspACI CCGC 5 cut(s) 244, 253, 277, 2171, 2624
BspANI GGCC 3 cut(s) 1384, 1944, 2147
BspCNI CTCAG 9 cut(s) 473, 505, 537, 543, 591, 1194, 1569, 1634, 2548
BspEI TCCGGA 2 cut(s) 1174, 1958
BspFNI CGCG 1 cut(s) 246
BspHI TCATGA 1 cut(s) 2047
BspLI GGNNCC 4 cut(s) 156, 867, 1096, 1301
BspMI ACCTGC 1 cut(s) 1027
BspPI GGATC 6 cut(s) 149, 162, 218, 912, 1669, 2299
BspT104I TTCGAA 1 cut(s) 1233
BspTI CTTAAG 2 cut(s) 382, 1057
BspTNI GGTCTC 2 cut(s) 10, 435
BsrDI GCAATG 4 cut(s) 88, 1287, 1859, 2578
BssECI CCNNGG 7 cut(s) 475, 779, 838, 861, 1939, 2142, 2753
BssT1I CCWWGG 6 cut(s) 779, 838, 861, 1939, 2142, 2753
Bst2UI CCWGG 1 cut(s) 1297
Bst6I CTCTTC 3 cut(s) 714, 1176, 1673
BstAFI CTTAAG 2 cut(s) 382, 1057
BstBI TTCGAA 1 cut(s) 1233
BstC8I GCNNGC 4 cut(s) 248, 407, 639, 2336
BstDSI CCRYGG 2 cut(s) 2142, 2753
BstEII GGTNACC 1 cut(s) 1115
BstF5I GGATG 6 cut(s) 856, 1098, 1695, 1821, 2250, 2625
BstFNI CGCG 1 cut(s) 246
BstH2I RGCGCY 1 cut(s) 128
BstHHI GCGC 3 cut(s) 127, 1872, 2612
BstMAI GTCTC 7 cut(s) 10, 186, 435, 533, 1320, 2031, 2218
BstMWI GCNNNNNNNGC 5 cut(s) 252, 1381, 1423, 2331, 2568
BstNI CCWGG 1 cut(s) 1297
BstNSI RCATGY 4 cut(s) 409, 2124, 2293, 2752
BstPI GGTNACC 1 cut(s) 1115
BstSCI CCNGG 1 cut(s) 1295
BstUI CGCG 1 cut(s) 246
BstV1I GCAGC 2 cut(s) 1304, 2619
BstV2I GAAGAC 1 cut(s) 2676
BstX2I RGATCY 6 cut(s) 154, 871, 904, 1636, 1661, 2304
BstXI CCANNNNNNTGG 2 cut(s) 1529, 1595
BstYI RGATCY 6 cut(s) 154, 871, 904, 1636, 1661, 2304
BsuI GTATCC 2 cut(s) 1636, 2648
BsuRI GGCC 3 cut(s) 1384, 1944, 2147
BtgI CCRYGG 2 cut(s) 2142, 2753
BtsCI GGATG 6 cut(s) 856, 1098, 1695, 1821, 2250, 2625
BtsIMutI CAGTG 4 cut(s) 538, 1740, 2143, 2328
BveI ACCTGC 1 cut(s) 1027
Cac8I GCNNGC 4 cut(s) 248, 407, 639, 2336
CaiI CAGNNNCTG 2 cut(s) 467, 2779
CciI TCATGA 1 cut(s) 2047
CfoI GCGC 3 cut(s) 127, 1872, 2612
Cfr13I GGNCC 5 cut(s) 974, 1094, 1382, 2083, 2275
Csp6I GTAC 3 cut(s) 843, 1840, 1917
CspCI CAANNNNNGTGG 4 cut(s) 811, 846, 1661, 1696
CviQI GTAC 3 cut(s) 843, 1840, 1917
DraI TTTAAA 1 cut(s) 1791
EaeI YGGCCR 2 cut(s) 1942, 2145
Eam1104I CTCTTC 3 cut(s) 714, 1176, 1673
EarI CTCTTC 3 cut(s) 714, 1176, 1673
EciI GGCGGA 1 cut(s) 242
Ecl136II GAGCTC 2 cut(s) 250, 2588
Eco130I CCWWGG 6 cut(s) 779, 838, 861, 1939, 2142, 2753
Eco24I GRGCYC 2 cut(s) 252, 2590
Eco31I GGTCTC 2 cut(s) 10, 435
Eco32I GATATC 2 cut(s) 70, 1218
Eco47I GGWCC 4 cut(s) 974, 1094, 2083, 2275
Eco47III AGCGCT 1 cut(s) 126
Eco53kI GAGCTC 2 cut(s) 250, 2588
Eco57I CTGAAG 3 cut(s) 563, 1269, 1298
Eco91I GGTNACC 1 cut(s) 1115
EcoICRI GAGCTC 2 cut(s) 250, 2588
EcoO109I RGGNCCY 2 cut(s) 1094, 1382
EcoO65I GGTNACC 1 cut(s) 1115
EcoRII CCWGG 1 cut(s) 1295
EcoRV GATATC 2 cut(s) 70, 1218
EcoT14I CCWWGG 6 cut(s) 779, 838, 861, 1939, 2142, 2753
EcoT22I ATGCAT 1 cut(s) 943
EcoT38I GRGCYC 2 cut(s) 252, 2590
ErhI CCWWGG 6 cut(s) 779, 838, 861, 1939, 2142, 2753
FalI AAGNNNNNCTT 2 cut(s) 2365, 2397
FaqI GGGAC 3 cut(s) 1080, 1742, 1996
FauI CCCGC 1 cut(s) 270
FauNDI CATATG 1 cut(s) 675
FbaI TGATCA 2 cut(s) 694, 2551
FblI GTMKAC 1 cut(s) 681
Fnu4HI GCNGC 4 cut(s) 1293, 2171, 2608, 2624
FokI GGATG 6 cut(s) 843, 1085, 1702, 1808, 2257, 2632
FriOI GRGCYC 2 cut(s) 252, 2590
Fsp4HI GCNGC 4 cut(s) 1293, 2171, 2608, 2624
FspBI CTAG 9 cut(s) 417, 593, 780, 852, 1379, 1515, 1634, 2559, 2741
FspI TGCGCA 1 cut(s) 1871
GlaI GCGC 3 cut(s) 126, 1871, 2611
GluI GCNGC 4 cut(s) 1293, 2171, 2608, 2624
GsaI CCCAGC 1 cut(s) 2177
GsuI CTGGAG 4 cut(s) 231, 1232, 1764, 2319
HaeII RGCGCY 1 cut(s) 128
HaeIII GGCC 3 cut(s) 1384, 1944, 2147
HapII CCGG 3 cut(s) 1175, 1644, 1959
HhaI GCGC 3 cut(s) 127, 1872, 2612
Hin6I GCGC 3 cut(s) 125, 1870, 2610
HinP1I GCGC 3 cut(s) 125, 1870, 2610
HincII GTYRAC 6 cut(s) 682, 689, 1190, 1573, 1936, 2250
HindII GTYRAC 6 cut(s) 682, 689, 1190, 1573, 1936, 2250
HindIII AAGCTT 4 cut(s) 650, 958, 1424, 2027
HpaI GTTAAC 1 cut(s) 1936
HpaII CCGG 3 cut(s) 1175, 1644, 1959
HphI GGTGA 4 cut(s) 125, 1544, 2224, 2456
HpyAV CCTTC 7 cut(s) 104, 168, 538, 1229, 1727, 2000, 2391
HpyCH4IV ACGT 2 cut(s) 59, 2493
HpyF10VI GCNNNNNNNGC 5 cut(s) 252, 1381, 1423, 2331, 2568
HpySE526I ACGT 2 cut(s) 59, 2493
HspAI GCGC 3 cut(s) 125, 1870, 2610
Kpn2I TCCGGA 2 cut(s) 1174, 1958
Ksp22I TGATCA 2 cut(s) 694, 2551
KspAI GTTAAC 1 cut(s) 1936
LmnI GCTCC 7 cut(s) 255, 357, 1835, 2108, 2585, 2593, 2757
Lsp1109I GCAGC 2 cut(s) 1304, 2619
LweI GCATC 6 cut(s) 373, 632, 765, 950, 1384, 2610
MaeI CTAG 9 cut(s) 417, 593, 780, 852, 1379, 1515, 1634, 2559, 2741
MaeII ACGT 2 cut(s) 59, 2493
MaeIII GTNAC 9 cut(s) 386, 669, 1115, 1517, 1602, 2212, 2393, 2406, 2483
MboII GAAGA 9 cut(s) 701, 1163, 1479, 1660, 1727, 2385, 2681, 2698, 2756
MfeI CAATTG 1 cut(s) 1418
MflI RGATCY 6 cut(s) 154, 871, 904, 1636, 1661, 2304
MhlI GDGCHC 2 cut(s) 252, 2590
MlsI TGGCCA 2 cut(s) 1944, 2147
MluNI TGGCCA 2 cut(s) 1944, 2147
MlyI GAGTC 1 cut(s) 2491
MmeI TCCRAC 5 cut(s) 1344, 1369, 1490, 1994, 2680
Mox20I TGGCCA 2 cut(s) 1944, 2147
Mph1103I ATGCAT 1 cut(s) 943
MroI TCCGGA 2 cut(s) 1174, 1958
MroXI GAANNNNTTC 2 cut(s) 1283, 2380
MscI TGGCCA 2 cut(s) 1944, 2147
MslI CAYNNNNRTG 3 cut(s) 1495, 1884, 2270
Msp20I TGGCCA 2 cut(s) 1944, 2147
MspA1I CMGCKG 2 cut(s) 277, 2173
MspCI CTTAAG 2 cut(s) 382, 1057
MspI CCGG 3 cut(s) 1175, 1644, 1959
MspR9I CCNGG 1 cut(s) 1297
MunI CAATTG 1 cut(s) 1418
Mva1269I GAATGC 2 cut(s) 1965, 2760
MvaI CCWGG 1 cut(s) 1297
MvnI CGCG 1 cut(s) 246
MwoI GCNNNNNNNGC 5 cut(s) 252, 1381, 1423, 2331, 2568
NcoI CCATGG 2 cut(s) 2142, 2753
NdeI CATATG 1 cut(s) 675
NlaIV GGNNCC 4 cut(s) 156, 867, 1096, 1301
NmuCI GTSAC 2 cut(s) 2212, 2483
NsbI TGCGCA 1 cut(s) 1871
NsiI ATGCAT 1 cut(s) 943
NspI RCATGY 4 cut(s) 409, 2124, 2293, 2752
NspV TTCGAA 1 cut(s) 1233
OliI CACNNNNGTG 1 cut(s) 1495
PaeI GCATGC 1 cut(s) 409
PagI TCATGA 1 cut(s) 2047
PcsI WCGNNNNNNNCGW 1 cut(s) 750
PctI GAATGC 2 cut(s) 1965, 2760
PdmI GAANNNNTTC 2 cut(s) 1283, 2380
PflMI CCANNNNNTGG 1 cut(s) 2080
PkrI GCNGC 4 cut(s) 1294, 2172, 2609, 2625
PleI GAGTC 1 cut(s) 2490
PpsI GAGTC 1 cut(s) 2490
PpuMI RGGWCCY 1 cut(s) 1094
PshBI ATTAAT 1 cut(s) 482
Psp124BI GAGCTC 2 cut(s) 252, 2590
Psp1406I AACGTT 1 cut(s) 59
Psp5II RGGWCCY 1 cut(s) 1094
Psp6I CCWGG 1 cut(s) 1295
PspEI GGTNACC 1 cut(s) 1115
PspFI CCCAGC 1 cut(s) 2173
PspGI CCWGG 1 cut(s) 1295
PspN4I GGNNCC 4 cut(s) 156, 867, 1096, 1301
PspPI GGNCC 5 cut(s) 974, 1094, 1382, 2083, 2275
PspPPI RGGWCCY 1 cut(s) 1094
PstNI CAGNNNCTG 2 cut(s) 467, 2779
PsuI RGATCY 6 cut(s) 154, 871, 904, 1636, 1661, 2304
RsaI GTAC 3 cut(s) 844, 1841, 1918
RsaNI GTAC 3 cut(s) 843, 1840, 1917
RseI CAYNNNNRTG 3 cut(s) 1495, 1884, 2270
SacI GAGCTC 2 cut(s) 252, 2590
SalI GTCGAC 1 cut(s) 680
SatI GCNGC 4 cut(s) 1293, 2171, 2608, 2624
Sau96I GGNCC 5 cut(s) 974, 1094, 1382, 2083, 2275
SchI GAGTC 1 cut(s) 2491
ScrFI CCNGG 1 cut(s) 1297
SduI GDGCHC 2 cut(s) 252, 2590
SfaNI GCATC 6 cut(s) 373, 632, 765, 950, 1384, 2610
SfuI TTCGAA 1 cut(s) 1233
SinI GGWCC 4 cut(s) 974, 1094, 2083, 2275
SmiMI CAYNNNNRTG 3 cut(s) 1495, 1884, 2270
SmlI CTYRAG 5 cut(s) 149, 382, 1057, 1067, 1349
SmoI CTYRAG 5 cut(s) 149, 382, 1057, 1067, 1349
SphI GCATGC 1 cut(s) 409
SsiI CCGC 5 cut(s) 244, 253, 277, 2171, 2624
SspI AATATT 1 cut(s) 2237
SspMI CTAG 9 cut(s) 417, 593, 780, 852, 1379, 1515, 1634, 2559, 2741
SstI GAGCTC 2 cut(s) 252, 2590
StyD4I CCNGG 1 cut(s) 1295
StyI CCWWGG 6 cut(s) 779, 838, 861, 1939, 2142, 2753
TaiI ACGT 2 cut(s) 62, 2496
TaqI TCGA 8 cut(s) 558, 681, 744, 1004, 1233, 1324, 2354, 2667
TaqII GACCGA 1 cut(s) 996
TauI GCSGC 2 cut(s) 2173, 2626
TscAI CASTG 4 cut(s) 538, 1747, 2143, 2335
TseFI GTSAC 2 cut(s) 2212, 2483
TseI GCWGC 2 cut(s) 1292, 2607
Tsp45I GTSAC 2 cut(s) 2212, 2483
TspGWI ACGGA 2 cut(s) 1934, 2658
TspRI CASTG 4 cut(s) 538, 1747, 2143, 2335
Van91I CCANNNNNTGG 1 cut(s) 2080
Vha464I CTTAAG 2 cut(s) 382, 1057
VpaK11BI GGWCC 4 cut(s) 974, 1094, 2083, 2275
VspI ATTAAT 1 cut(s) 482
XceI RCATGY 4 cut(s) 409, 2124, 2293, 2752
XmaJI CCTAGG 1 cut(s) 779
XmiI GTMKAC 1 cut(s) 681
XmnI GAANNNNTTC 2 cut(s) 1283, 2380
XspI CTAG 9 cut(s) 417, 593, 780, 852, 1379, 1515, 1634, 2559, 2741
Zsp2I ATGCAT 1 cut(s) 943
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.