RLG00000026840

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
6456969 .. 6457607
639 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026840

Sequence Viewer

Length: 450 bp
ATGGGAACTTGTGATGAAGAATACTTTATTGCCTTGTTGGTTTTGTGTACATGGTCTGCTATTTATATTACAATCGATGAACCTCTAGGAGAACTATCAGACAATAAGTTAATTGAAATGAGTGGGCACGCATGCCTTTGTGTTGCTCGTGATACCTATTCTGTTGCTAATTGTGTGGTTATGTTGTTGATGAGACTCATTACTGCTATTACACTCAGCAAGAATTGCAGTGCAAACAAGGCGGTGCCACCAACACTTGATCGGCAAGACAAAGGATATGATTTACTGGAAGATGAGTGGTTCTACCTGAGCTTGGGATTGGGATTCATGGTTGGTTTCTGGTGTATACTTGGTTCTTTGCTGGTAAACATGCCATGGAGCTTTGCTTTTTCGCGATTCCTCAATAGCATTGTGCTTAAACTTTATGCTGTAATTGTTGAATACGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

150

Amino Acids

16.76

Weight (kDa)

4.49

Isoelectric Point (pI)

35.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 244
AccI GTMKAC 1 cut(s) 346
AccII CGCG 1 cut(s) 394
AciI CCGC 1 cut(s) 242
AfaI GTAC 1 cut(s) 49
AfiI CCNNNNNNNGG 1 cut(s) 313
AgsI TTSAA 2 cut(s) 116, 440
AluBI AGCT 2 cut(s) 312, 381
AluI AGCT 2 cut(s) 312, 381
Alw26I GTCTC 1 cut(s) 187
BaeGI GKGCMC 1 cut(s) 129
BanI GGYRCC 1 cut(s) 244
BauI CACGAG 1 cut(s) 147
BcoDI GTCTC 1 cut(s) 187
BfaI CTAG 1 cut(s) 86
BmiI GGNNCC 1 cut(s) 246
Bpu10I CCTNAGC 1 cut(s) 308
Bsa29I ATCGAT 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 374
Bsc4I CCNNNNNNNGG 1 cut(s) 313
Bse1I ACTGG 1 cut(s) 291
BseCI ATCGAT 1 cut(s) 75
BseDI CCNNGG 1 cut(s) 374
BseLI CCNNNNNNNGG 1 cut(s) 313
BseMII CTCAG 2 cut(s) 229, 299
BseNI ACTGG 1 cut(s) 291
BseSI GKGCMC 1 cut(s) 129
Bsh1236I CGCG 1 cut(s) 394
BshNI GGYRCC 1 cut(s) 244
BshVI ATCGAT 1 cut(s) 75
BslI CCNNNNNNNGG 1 cut(s) 313
BsmAI GTCTC 1 cut(s) 187
Bsp1286I GDGCHC 1 cut(s) 129
Bsp1407I TGTACA 1 cut(s) 47
Bsp143I GATC 1 cut(s) 259
Bsp19I CCATGG 1 cut(s) 374
Bsp68I TCGCGA 1 cut(s) 394
BspACI CCGC 1 cut(s) 242
BspCNI CTCAG 2 cut(s) 228, 300
BspDI ATCGAT 1 cut(s) 75
BspFNI CGCG 1 cut(s) 394
BspLI GGNNCC 1 cut(s) 246
BspT107I GGYRCC 1 cut(s) 244
BsrGI TGTACA 1 cut(s) 47
BsrI ACTGG 1 cut(s) 291
BssECI CCNNGG 1 cut(s) 374
BssMI GATC 1 cut(s) 259
BssNAI GTATAC 1 cut(s) 347
BssSI CACGAG 1 cut(s) 147
BssT1I CCWWGG 1 cut(s) 374
Bst1107I GTATAC 1 cut(s) 347
Bst2BI CACGAG 1 cut(s) 147
BstAPI GCANNNNNTGC 1 cut(s) 225
BstAUI TGTACA 1 cut(s) 47
BstC8I GCNNGC 2 cut(s) 129, 133
BstDEI CTNAG 2 cut(s) 215, 308
BstDSI CCRYGG 1 cut(s) 374
BstFNI CGCG 1 cut(s) 394
BstKTI GATC 1 cut(s) 262
BstMAI GTCTC 1 cut(s) 187
BstMBI GATC 1 cut(s) 259
BstMWI GCNNNNNNNGC 2 cut(s) 225, 239
BstNSI RCATGY 2 cut(s) 135, 373
BstSLI GKGCMC 1 cut(s) 129
BstUI CGCG 1 cut(s) 394
BstZ17I GTATAC 1 cut(s) 347
Bsu15I ATCGAT 1 cut(s) 75
BsuTUI ATCGAT 1 cut(s) 75
BtgI CCRYGG 1 cut(s) 374
BtsI GCAGTG 1 cut(s) 235
BtsIMutI CAGTG 1 cut(s) 235
BtuMI TCGCGA 1 cut(s) 394
Cac8I GCNNGC 2 cut(s) 129, 133
ClaI ATCGAT 1 cut(s) 75
Csp6I GTAC 1 cut(s) 48
CviAII CATG 5 cut(s) 51, 132, 328, 370, 375
CviJI RGCY 2 cut(s) 312, 381
CviKI_1 RGCY 2 cut(s) 312, 381
CviQI GTAC 1 cut(s) 48
DdeI CTNAG 2 cut(s) 215, 308
DpnI GATC 1 cut(s) 261
DpnII GATC 1 cut(s) 259
Eco130I CCWWGG 1 cut(s) 374
EcoT14I CCWWGG 1 cut(s) 374
ErhI CCWWGG 1 cut(s) 374
FaeI CATG 5 cut(s) 54, 135, 331, 373, 378
FatI CATG 5 cut(s) 50, 131, 327, 369, 374
FblI GTMKAC 1 cut(s) 346
FspBI CTAG 1 cut(s) 86
Hin1II CATG 5 cut(s) 54, 135, 331, 373, 378
HinfI GANTC 3 cut(s) 195, 324, 396
Hpy166II GTNNAC 3 cut(s) 48, 347, 367
Hpy188I TCNGA 1 cut(s) 100
Hpy188III TCNNGA 2 cut(s) 149, 393
Hpy8I GTNNAC 3 cut(s) 48, 347, 367
HpyCH4IV ACGT 1 cut(s) 444
HpyCH4V TGCA 2 cut(s) 228, 233
HpyF10VI GCNNNNNNNGC 2 cut(s) 225, 239
HpyF3I CTNAG 2 cut(s) 215, 308
HpySE526I ACGT 1 cut(s) 444
Hsp92II CATG 5 cut(s) 54, 135, 331, 373, 378
Kzo9I GATC 1 cut(s) 259
LmnI GCTCC 1 cut(s) 378
LpnPI CCDG 4 cut(s) 272, 320, 325, 347
MaeI CTAG 1 cut(s) 86
MaeII ACGT 1 cut(s) 444
MalI GATC 1 cut(s) 261
MboI GATC 1 cut(s) 259
MboII GAAGA 2 cut(s) 29, 302
MhlI GDGCHC 1 cut(s) 129
MluCI AATT 4 cut(s) 111, 169, 223, 432
MlyI GAGTC 1 cut(s) 189
MnlI CCTC 2 cut(s) 93, 410
MseI TTAA 2 cut(s) 110, 417
MvnI CGCG 1 cut(s) 394
MwoI GCNNNNNNNGC 2 cut(s) 225, 239
NcoI CCATGG 1 cut(s) 374
NdeII GATC 1 cut(s) 259
NlaIII CATG 5 cut(s) 54, 135, 331, 373, 378
NlaIV GGNNCC 1 cut(s) 246
NruI TCGCGA 1 cut(s) 394
NspI RCATGY 2 cut(s) 135, 373
PaeI GCATGC 1 cut(s) 135
PfeI GAWTC 2 cut(s) 324, 396
PleI GAGTC 1 cut(s) 189
PpsI GAGTC 1 cut(s) 189
PspN4I GGNNCC 1 cut(s) 246
PsrI GAACNNNNNNTAC 2 cut(s) 337, 369
RruI TCGCGA 1 cut(s) 394
RsaI GTAC 1 cut(s) 49
RsaNI GTAC 1 cut(s) 48
SaqAI TTAA 2 cut(s) 110, 417
Sau3AI GATC 1 cut(s) 259
SchI GAGTC 1 cut(s) 189
SduI GDGCHC 1 cut(s) 129
SetI ASST 6 cut(s) 85, 158, 309, 314, 383, 447
SphI GCATGC 1 cut(s) 135
Sse9I AATT 4 cut(s) 111, 169, 223, 432
SsiI CCGC 1 cut(s) 242
SspMI CTAG 1 cut(s) 86
StyI CCWWGG 1 cut(s) 374
TaiI ACGT 1 cut(s) 447
TaqI TCGA 1 cut(s) 75
TasI AATT 4 cut(s) 111, 169, 223, 432
TatI WGTACW 1 cut(s) 47
TfiI GAWTC 2 cut(s) 324, 396
Tru1I TTAA 2 cut(s) 110, 417
Tru9I TTAA 2 cut(s) 110, 417
TscAI CASTG 1 cut(s) 235
TspDTI ATGAA 3 cut(s) 30, 93, 316
TspRI CASTG 1 cut(s) 235
XceI RCATGY 2 cut(s) 135, 373
XmiI GTMKAC 1 cut(s) 346
XspI CTAG 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.