Prupe.3G019600_v2.0.a1

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000281
Physical Location & Seq
Forward (+)
1437255 .. 1437653
399 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G019600.1

Sequence Viewer

Length: 399 bp
ATGAGAATTGTTTCAGTTTTCAGATTTCTAAGCATTGCAACCATTACTACCATTAGCTTATGCAATGGAAATTTGGGTGTGGCTTGTAAACAAAATGAGAGACAAGCACTTCTAATTTTCAAGCAAGATCTTAAGGATCCTTCAAATAGGCTTTTATCTTGGGTTGGTGAGGGAGATTGTTGCAATTGGACTGGAGTTGTCTGCGACAATTTAACCGGTCATGTCCCTGAGCTGCACCTTGGAAATTATTATTCAGATGAGTATCTGAATCACAGTTTGTATCAAGAAAGCTCTTTGGGTGGCAAGGTAAATACTTCTCTACTAAATTTAAAGCATCTGAGCTACATGGATATCCAAGCAACAATGATTTTTGAGGAATACAGATTCCTAGCTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

133

Amino Acids

14.91

Weight (kDa)

5.73

Isoelectric Point (pI)

23.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 131, 144
AcsI RAATTY 2 cut(s) 70, 325
AflII CTTAAG 1 cut(s) 131
AgeI ACCGGT 1 cut(s) 215
AgsI TTSAA 2 cut(s) 121, 144
AluBI AGCT 5 cut(s) 57, 232, 291, 342, 392
AluI AGCT 5 cut(s) 57, 232, 291, 342, 392
Alw26I GTCTC 1 cut(s) 94
AlwI GGATC 2 cut(s) 131, 144
ApeKI GCWGC 1 cut(s) 232
ApoI RAATTY 2 cut(s) 70, 325
AsiGI ACCGGT 1 cut(s) 215
Asp700I GAANNNNTTC 1 cut(s) 10
AsuHPI GGTGA 1 cut(s) 179
BamHI GGATCC 1 cut(s) 136
BbvI GCAGC 1 cut(s) 219
BcoDI GTCTC 1 cut(s) 94
BfaI CTAG 1 cut(s) 389
BfrI CTTAAG 1 cut(s) 131
BglII AGATCT 1 cut(s) 127
BisI GCNGC 1 cut(s) 233
BlsI GCNGC 1 cut(s) 234
BmiI GGNNCC 1 cut(s) 138
BmsI GCATC 1 cut(s) 343
BpmI CTGGAG 1 cut(s) 213
Bpu10I CCTNAGC 1 cut(s) 228
BsaBI GATNNNNATC 1 cut(s) 261
BsaJI CCNNGG 1 cut(s) 238
BsaWI WCCGGW 1 cut(s) 215
Bse118I RCCGGY 1 cut(s) 215
Bse1I ACTGG 1 cut(s) 196
Bse3DI GCAATG 2 cut(s) 33, 70
Bse8I GATNNNNATC 1 cut(s) 261
BseDI CCNNGG 1 cut(s) 238
BseJI GATNNNNATC 1 cut(s) 261
BseMI GCAATG 2 cut(s) 33, 70
BseMII CTCAG 2 cut(s) 219, 329
BseNI ACTGG 1 cut(s) 196
BseXI GCAGC 1 cut(s) 219
BsgI GTGCAG 1 cut(s) 218
BshTI ACCGGT 1 cut(s) 215
BsiSI CCGG 1 cut(s) 216
BslFI GGGAC 1 cut(s) 209
BsmAI GTCTC 1 cut(s) 94
BsmFI GGGAC 1 cut(s) 209
Bsp143I GATC 2 cut(s) 127, 136
BspCNI CTCAG 2 cut(s) 220, 330
BspLI GGNNCC 1 cut(s) 138
BspPI GGATC 2 cut(s) 131, 144
BspTI CTTAAG 1 cut(s) 131
BsrDI GCAATG 2 cut(s) 33, 70
BsrFI RCCGGY 1 cut(s) 215
BsrI ACTGG 1 cut(s) 196
BssAI RCCGGY 1 cut(s) 215
BssECI CCNNGG 1 cut(s) 238
BssMI GATC 2 cut(s) 127, 136
BssT1I CCWWGG 1 cut(s) 238
Bst4CI ACNGT 1 cut(s) 275
BstAFI CTTAAG 1 cut(s) 131
BstDEI CTNAG 4 cut(s) 29, 228, 338, 396
BstKTI GATC 2 cut(s) 130, 139
BstMAI GTCTC 1 cut(s) 94
BstMBI GATC 2 cut(s) 127, 136
BstV1I GCAGC 1 cut(s) 219
BstX2I RGATCY 2 cut(s) 127, 136
BstYI RGATCY 2 cut(s) 127, 136
Cfr10I RCCGGY 1 cut(s) 215
CspAI ACCGGT 1 cut(s) 215
CviAII CATG 2 cut(s) 221, 346
CviJI RGCY 7 cut(s) 57, 83, 151, 232, 291, 342, 392
CviKI_1 RGCY 7 cut(s) 57, 83, 151, 232, 291, 342, 392
DdeI CTNAG 4 cut(s) 29, 228, 338, 396
DpnI GATC 2 cut(s) 129, 138
DpnII GATC 2 cut(s) 127, 136
DraI TTTAAA 1 cut(s) 330
Eco130I CCWWGG 1 cut(s) 238
Eco32I GATATC 1 cut(s) 352
EcoRV GATATC 1 cut(s) 352
EcoT14I CCWWGG 1 cut(s) 238
ErhI CCWWGG 1 cut(s) 238
FaeI CATG 2 cut(s) 224, 349
FaiI YATR 3 cut(s) 61, 222, 347
FaqI GGGAC 1 cut(s) 209
FatI CATG 2 cut(s) 220, 345
Fnu4HI GCNGC 1 cut(s) 233
Fsp4HI GCNGC 1 cut(s) 233
FspBI CTAG 1 cut(s) 389
GluI GCNGC 1 cut(s) 233
GsuI CTGGAG 1 cut(s) 213
HapII CCGG 1 cut(s) 216
Hin1II CATG 2 cut(s) 224, 349
HinfI GANTC 2 cut(s) 268, 384
HpaII CCGG 1 cut(s) 216
HphI GGTGA 1 cut(s) 179
Hpy166II GTNNAC 1 cut(s) 89
Hpy188I TCNGA 4 cut(s) 23, 256, 267, 339
Hpy188III TCNNGA 1 cut(s) 284
Hpy8I GTNNAC 1 cut(s) 89
HpyAV CCTTC 1 cut(s) 150
HpyCH4III ACNGT 1 cut(s) 275
HpyCH4V TGCA 4 cut(s) 38, 63, 183, 235
HpyF3I CTNAG 4 cut(s) 29, 228, 338, 396
Hsp92II CATG 2 cut(s) 224, 349
Kzo9I GATC 2 cut(s) 127, 136
LpnPI CCDG 3 cut(s) 177, 229, 240
Lsp1109I GCAGC 1 cut(s) 219
LweI GCATC 1 cut(s) 343
MaeI CTAG 1 cut(s) 389
MalI GATC 2 cut(s) 129, 138
MboI GATC 2 cut(s) 127, 136
MfeI CAATTG 1 cut(s) 184
MflI RGATCY 2 cut(s) 127, 136
MluCI AATT 7 cut(s) 6, 70, 114, 184, 208, 244, 325
MnlI CCTC 2 cut(s) 163, 367
MroXI GAANNNNTTC 1 cut(s) 10
MseI TTAA 3 cut(s) 132, 212, 329
MspCI CTTAAG 1 cut(s) 131
MspI CCGG 1 cut(s) 216
MunI CAATTG 1 cut(s) 184
NdeII GATC 2 cut(s) 127, 136
NlaIII CATG 2 cut(s) 224, 349
NlaIV GGNNCC 1 cut(s) 138
PdmI GAANNNNTTC 1 cut(s) 10
PfeI GAWTC 2 cut(s) 268, 384
PinAI ACCGGT 1 cut(s) 215
PkrI GCNGC 1 cut(s) 234
PspN4I GGNNCC 1 cut(s) 138
PsuI RGATCY 2 cut(s) 127, 136
SaqAI TTAA 3 cut(s) 132, 212, 329
SatI GCNGC 1 cut(s) 233
Sau3AI GATC 2 cut(s) 127, 136
SetI ASST 7 cut(s) 59, 234, 240, 293, 309, 344, 394
SfaNI GCATC 1 cut(s) 343
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 7 cut(s) 6, 70, 114, 184, 208, 244, 325
SspMI CTAG 1 cut(s) 389
StyI CCWWGG 1 cut(s) 238
TaaI ACNGT 1 cut(s) 275
TasI AATT 7 cut(s) 6, 70, 114, 184, 208, 244, 325
TfiI GAWTC 2 cut(s) 268, 384
Tru1I TTAA 3 cut(s) 132, 212, 329
Tru9I TTAA 3 cut(s) 132, 212, 329
TseI GCWGC 1 cut(s) 232
Vha464I CTTAAG 1 cut(s) 131
XapI RAATTY 2 cut(s) 70, 325
XmnI GAANNNNTTC 1 cut(s) 10
XspI CTAG 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.