MD15G1429800.v1.1

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000281
Physical Location & Seq
Forward (+)
53014121 .. 53015071
951 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1429800.v1.1.491

Sequence Viewer

Length: 951 bp
ATGATTGACTTCAGGTCGAATCAATTCAAAAGTTCATTGTCTCTTGTGTCTTCAGCAGTGTCTACACTTGATCTTTCCACTTCATCATTTTCAGGAACTCTCTCTCACTTCTTTTGTGATAGGAGTGATGTACCTAAAAACCTTCAAGTTCTTCATCTTGATAACAATTTCCTCGTTGGAGAAATTCCTGATTGTCTATTAAATTGGCCAAATTTAGATAACAACAATTTGACAGGGAAAATTCCAAGCTCTATCGGGGACTTACTTTCCCTTCAATCATTGCACTTGCGCAATAATAACCTATCTGGAGAATTACATGTGTCCCTACAAAACTGTAAGCAGCTGTTACTTCTTGACCTTGGTGGAAACAAGTTTGTTGGAAGCATTCCAATATGGTTTGGGCAAAGCTTGGTAGTTCTTAGTCTTCGTTCAAATAAGTTCCATGGCGACATTCCTGATGAACTCTGTAGTCTCATAAATCTTCGAATCTTGGACCTTGCGCATAACAATCTCTCGGGAACGATAACAAGATGTTTCCAACATTTGTCATCCATGGCCATAGCCACATCATTTGAGTTGGACAATCGGTCTGTAGGATTTGGTAGCCCTGGCATTATCCTATTTTCTGCTGGGGATAGTTATCTAGAGCATTTTGTGGAGGCCTACACAGAGAATGCAGTTTTTGTGACCAAAGGCAGAGAAATGGAATATACCACAATGCTTGGTTTGGTGGTTGGCTTGGACCTTGCAAGCAACATGTTATTTGGAGAAATCCCTCAAGAGCTGACCAGTCTCATTAGCTTACAAACATTGAATTTATCCAACTATCGTCTGACAGGAAGAATCCCTTCCAAAATCGGTGATATTGGGCTATGTCTTCCACTTCAGCTGAACTTGATTGGATACAACAACTTCTTCAATTTCTGCACATCAAACTTCCAACAGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

317

Amino Acids

34.86

Weight (kDa)

5.28

Isoelectric Point (pI)

32.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 78 - 174 1.3e-06 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 290, 501
AccI GTMKAC 1 cut(s) 62
AcoI YGGCCR 2 cut(s) 206, 555
AcsI RAATTY 4 cut(s) 183, 211, 240, 814
AcuI CTGAAG 2 cut(s) 36, 869
AfaI GTAC 1 cut(s) 132
AflIII ACRYGT 2 cut(s) 316, 756
AgsI TTSAA 6 cut(s) 28, 146, 275, 432, 814, 919
AhdI GACNNNNNGTC 2 cut(s) 13, 586
AjnI CCWGG 1 cut(s) 607
AluBI AGCT 7 cut(s) 249, 343, 408, 784, 801, 889, 946
AluI AGCT 7 cut(s) 249, 343, 408, 784, 801, 889, 946
Alw26I GTCTC 3 cut(s) 45, 476, 797
Ama87I CYCGRG 1 cut(s) 514
AoxI GGCC 3 cut(s) 206, 555, 660
ApeKI GCWGC 1 cut(s) 340
ApoI RAATTY 4 cut(s) 183, 211, 240, 814
Asp700I GAANNNNTTC 2 cut(s) 23, 847
AspLEI GCGC 2 cut(s) 291, 502
AspS9I GGNCC 2 cut(s) 493, 742
AsuHPI GGTGA 1 cut(s) 872
AsuII TTCGAA 1 cut(s) 484
AvaI CYCGRG 1 cut(s) 514
AvaII GGWCC 2 cut(s) 493, 742
BalI TGGCCA 2 cut(s) 208, 557
BbsI GAAGAC 3 cut(s) 42, 416, 869
BbvI GCAGC 1 cut(s) 352
BciT130I CCWGG 1 cut(s) 609
BciVI GTATCC 1 cut(s) 896
BcoDI GTCTC 3 cut(s) 45, 476, 797
BfaI CTAG 2 cut(s) 644, 949
BfmI CTRYAG 2 cut(s) 466, 591
BfuI GTATCC 1 cut(s) 896
BisI GCNGC 1 cut(s) 341
BlsI GCNGC 1 cut(s) 342
Bme1390I CCNGG 1 cut(s) 609
Bme18I GGWCC 2 cut(s) 493, 742
BmeRI GACNNNNNGTC 2 cut(s) 13, 586
BmeT110I CYCGRG 1 cut(s) 514
BmgT120I GGNCC 2 cut(s) 493, 742
BmrFI CCNGG 1 cut(s) 609
BpiI GAAGAC 3 cut(s) 42, 416, 869
BpmI CTGGAG 1 cut(s) 327
Bpu14I TTCGAA 1 cut(s) 484
BpuEI CTTGAG 1 cut(s) 762
BsaBI GATNNNNATC 1 cut(s) 639
BsaJI CCNNGG 4 cut(s) 358, 442, 552, 607
Bse1I ACTGG 1 cut(s) 789
Bse3DI GCAATG 1 cut(s) 278
Bse8I GATNNNNATC 1 cut(s) 639
BseBI CCWGG 1 cut(s) 609
BseDI CCNNGG 4 cut(s) 358, 442, 552, 607
BseGI GGATG 1 cut(s) 548
BseJI GATNNNNATC 1 cut(s) 639
BseMI GCAATG 1 cut(s) 278
BseNI ACTGG 1 cut(s) 789
BseXI GCAGC 1 cut(s) 352
BseYI CCCAGC 1 cut(s) 629
BsgI GTGCAG 1 cut(s) 910
BshFI GGCC 3 cut(s) 208, 557, 662
BsiHKCI CYCGRG 1 cut(s) 514
BslFI GGGAC 2 cut(s) 272, 307
BsmAI GTCTC 3 cut(s) 45, 476, 797
BsmFI GGGAC 2 cut(s) 272, 307
BsmI GAATGC 2 cut(s) 384, 679
BsnI GGCC 3 cut(s) 208, 557, 662
BsoBI CYCGRG 1 cut(s) 514
Bsp119I TTCGAA 1 cut(s) 484
Bsp143I GATC 1 cut(s) 70
Bsp19I CCATGG 2 cut(s) 442, 552
BspANI GGCC 3 cut(s) 208, 557, 662
BspT104I TTCGAA 1 cut(s) 484
BsrDI GCAATG 1 cut(s) 278
BsrI ACTGG 1 cut(s) 789
BssECI CCNNGG 4 cut(s) 358, 442, 552, 607
BssMI GATC 1 cut(s) 70
BssT1I CCWWGG 3 cut(s) 358, 442, 552
Bst2UI CCWGG 1 cut(s) 609
Bst4CI ACNGT 1 cut(s) 335
BstBI TTCGAA 1 cut(s) 484
BstC8I GCNNGC 1 cut(s) 751
BstDEI CTNAG 1 cut(s) 419
BstDSI CCRYGG 2 cut(s) 442, 552
BstF5I GGATG 1 cut(s) 548
BstHHI GCGC 2 cut(s) 291, 502
BstKTI GATC 1 cut(s) 73
BstMAI GTCTC 3 cut(s) 45, 476, 797
BstMBI GATC 1 cut(s) 70
BstNI CCWGG 1 cut(s) 609
BstNSI RCATGY 2 cut(s) 320, 760
BstSCI CCNGG 1 cut(s) 607
BstSFI CTRYAG 2 cut(s) 466, 591
BstV1I GCAGC 1 cut(s) 352
BstV2I GAAGAC 3 cut(s) 42, 416, 869
BsuI GTATCC 1 cut(s) 896
BsuRI GGCC 3 cut(s) 208, 557, 662
BtgI CCRYGG 2 cut(s) 442, 552
BtsCI GGATG 1 cut(s) 548
BtsI GCAGTG 1 cut(s) 63
BtsIMutI CAGTG 1 cut(s) 63
Cac8I GCNNGC 1 cut(s) 751
CfoI GCGC 2 cut(s) 291, 502
Cfr13I GGNCC 2 cut(s) 493, 742
Csp6I GTAC 1 cut(s) 131
CspCI CAANNNNNGTGG 4 cut(s) 553, 588, 703, 738
CviAII CATG 4 cut(s) 317, 443, 553, 757
CviQI GTAC 1 cut(s) 131
DdeI CTNAG 1 cut(s) 419
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
DriI GACNNNNNGTC 2 cut(s) 13, 586
EaeI YGGCCR 2 cut(s) 206, 555
Eam1105I GACNNNNNGTC 2 cut(s) 13, 586
Eco130I CCWWGG 3 cut(s) 358, 442, 552
Eco147I AGGCCT 1 cut(s) 662
Eco47I GGWCC 2 cut(s) 493, 742
Eco57I CTGAAG 2 cut(s) 36, 869
Eco88I CYCGRG 1 cut(s) 514
EcoRII CCWGG 1 cut(s) 607
EcoT14I CCWWGG 3 cut(s) 358, 442, 552
ErhI CCWWGG 3 cut(s) 358, 442, 552
FaeI CATG 4 cut(s) 320, 446, 556, 760
FalI AAGNNNNNCTT 2 cut(s) 832, 864
FaqI GGGAC 2 cut(s) 272, 307
FatI CATG 4 cut(s) 316, 442, 552, 756
FblI GTMKAC 1 cut(s) 62
Fnu4HI GCNGC 1 cut(s) 341
FokI GGATG 1 cut(s) 535
Fsp4HI GCNGC 1 cut(s) 341
FspBI CTAG 2 cut(s) 644, 949
FspI TGCGCA 2 cut(s) 290, 501
GlaI GCGC 2 cut(s) 290, 501
GluI GCNGC 1 cut(s) 341
GsaI CCCAGC 1 cut(s) 633
GsuI CTGGAG 1 cut(s) 327
HaeIII GGCC 3 cut(s) 208, 557, 662
HhaI GCGC 2 cut(s) 291, 502
Hin1II CATG 4 cut(s) 320, 446, 556, 760
Hin6I GCGC 2 cut(s) 289, 500
HinP1I GCGC 2 cut(s) 289, 500
HindIII AAGCTT 1 cut(s) 406
HinfI GANTC 3 cut(s) 19, 486, 843
HphI GGTGA 1 cut(s) 872
Hpy166II GTNNAC 1 cut(s) 63
Hpy188I TCNGA 1 cut(s) 834
Hpy188III TCNNGA 9 cut(s) 93, 158, 188, 306, 353, 455, 516, 644, 779
Hpy8I GTNNAC 1 cut(s) 63
HpyAV CCTTC 3 cut(s) 152, 281, 858
HpyCH4III ACNGT 1 cut(s) 335
HpyCH4V TGCA 4 cut(s) 283, 677, 749, 927
HpyF3I CTNAG 1 cut(s) 419
Hsp92II CATG 4 cut(s) 320, 446, 556, 760
HspAI GCGC 2 cut(s) 289, 500
Kzo9I GATC 1 cut(s) 70
Lsp1109I GCAGC 1 cut(s) 352
MaeI CTAG 2 cut(s) 644, 949
MaeIII GTNAC 2 cut(s) 345, 685
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MboII GAAGA 7 cut(s) 42, 143, 416, 473, 852, 869, 907
MlsI TGGCCA 2 cut(s) 208, 557
MluNI TGGCCA 2 cut(s) 208, 557
MmeI TCCRAC 5 cut(s) 157, 358, 558, 562, 846
MnlI CCTC 3 cut(s) 182, 652, 786
Mox20I TGGCCA 2 cut(s) 208, 557
MroXI GAANNNNTTC 2 cut(s) 23, 847
MscI TGGCCA 2 cut(s) 208, 557
MseI TTAA 1 cut(s) 200
Msp20I TGGCCA 2 cut(s) 208, 557
MspA1I CMGCKG 2 cut(s) 343, 889
MspR9I CCNGG 1 cut(s) 609
Mva1269I GAATGC 2 cut(s) 384, 679
MvaI CCWGG 1 cut(s) 609
NcoI CCATGG 2 cut(s) 442, 552
NdeII GATC 1 cut(s) 70
NlaIII CATG 4 cut(s) 320, 446, 556, 760
NmuCI GTSAC 1 cut(s) 685
NsbI TGCGCA 2 cut(s) 290, 501
NspI RCATGY 2 cut(s) 320, 760
NspV TTCGAA 1 cut(s) 484
PceI AGGCCT 1 cut(s) 662
PciI ACATGT 2 cut(s) 316, 756
PctI GAATGC 2 cut(s) 384, 679
PdmI GAANNNNTTC 2 cut(s) 23, 847
PfeI GAWTC 3 cut(s) 19, 486, 843
PkrI GCNGC 1 cut(s) 342
PscI ACATGT 2 cut(s) 316, 756
Psp6I CCWGG 1 cut(s) 607
PspFI CCCAGC 1 cut(s) 629
PspGI CCWGG 1 cut(s) 607
PspPI GGNCC 2 cut(s) 493, 742
PvuII CAGCTG 2 cut(s) 343, 889
RsaI GTAC 1 cut(s) 132
RsaNI GTAC 1 cut(s) 131
SaqAI TTAA 1 cut(s) 200
SatI GCNGC 1 cut(s) 341
Sau3AI GATC 1 cut(s) 70
Sau96I GGNCC 2 cut(s) 493, 742
ScrFI CCNGG 1 cut(s) 609
SfcI CTRYAG 2 cut(s) 466, 591
SfuI TTCGAA 1 cut(s) 484
SinI GGWCC 2 cut(s) 493, 742
SmlI CTYRAG 1 cut(s) 777
SmoI CTYRAG 1 cut(s) 777
SseBI AGGCCT 1 cut(s) 662
SspMI CTAG 2 cut(s) 644, 949
StuI AGGCCT 1 cut(s) 662
StyD4I CCNGG 1 cut(s) 607
StyI CCWWGG 3 cut(s) 358, 442, 552
TaaI ACNGT 1 cut(s) 335
TaqI TCGA 2 cut(s) 17, 484
TaqII GACCGA 1 cut(s) 576
TfiI GAWTC 3 cut(s) 19, 486, 843
Tru1I TTAA 1 cut(s) 200
Tru9I TTAA 1 cut(s) 200
TscAI CASTG 1 cut(s) 63
TseFI GTSAC 1 cut(s) 685
TseI GCWGC 1 cut(s) 340
Tsp45I GTSAC 1 cut(s) 685
TspDTI ATGAA 4 cut(s) 24, 72, 143, 474
TspRI CASTG 1 cut(s) 63
VpaK11BI GGWCC 2 cut(s) 493, 742
XapI RAATTY 4 cut(s) 183, 211, 240, 814
XbaI TCTAGA 1 cut(s) 643
XceI RCATGY 2 cut(s) 320, 760
XmiI GTMKAC 1 cut(s) 62
XmnI GAANNNNTTC 2 cut(s) 23, 847
XspI CTAG 2 cut(s) 644, 949
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.