MD01G1179700.v1.1

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000281
Physical Location & Seq
Forward (+)
27934168 .. 27937115
2948 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1179700.v1.1.491

Sequence Viewer

Length: 591 bp
ATGGCCATTGCAACCATTACTTTCAGTATTGGTTTATCCAATGGAAATCCAGCTTGGCCTCCACTTTGCAAAGAAAGCGAAAGACGAGCACTTCTGATGTTCAAGCAAGATCTCAACGATCCTGCCAATCGCCTTTCATCGTGGGTTGCAGAAGAAGATTCAGATTGTTGCAGTTGGACAGGAGTTGTCTGTGATCACATGACCGGCCACATCCACGAGCTGCACCTTAATAATCCCGACACTTATTTTGATTTCCAATCTTCCTTCGGTGGACGAATTCCGAAAAGCACTCAACTGCAGAGCCTTGATCAGTCGAGCTTCCTCGGCAACGAACTATGCGGAGCTCCACTCAACAAGAATTGCAGCGAGAATGGGGTGATACCGCCACCAACAGTTGAGCACGACGGAGGAGGAGGATACAGTTTACTCGAAGATGAGTGGTTCTACGTGAGCTTGGGAGTTGGATTCTTCACGGGGTTTTGGATTGTGCTTGGTTCTTTGCTGGTAAACATGCCATGGAGCATTCTTCTTTCACAGTTGTTGAATAGGATAGTGTTTAAAATGTATCATGTAATTGTTGAATATGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

197

Amino Acids

21.82

Weight (kDa)

4.76

Isoelectric Point (pI)

45.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 26 - 65 2.9e-15 Leucine rich repeat N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 339, 383
AclWI GGATC 1 cut(s) 113
AcoI YGGCCR 2 cut(s) 3, 205
AcsI RAATTY 1 cut(s) 276
AgsI TTSAA 3 cut(s) 103, 544, 581
AjuI GAANNNNNNNTTGG 2 cut(s) 37, 69
AluBI AGCT 5 cut(s) 53, 220, 318, 344, 453
AluI AGCT 5 cut(s) 53, 220, 318, 344, 453
Alw21I GWGCWC 3 cut(s) 91, 346, 402
AlwI GGATC 1 cut(s) 113
AoxI GGCC 3 cut(s) 3, 56, 205
ApeKI GCWGC 2 cut(s) 220, 363
ApoI RAATTY 1 cut(s) 276
ArsI GACNNNNNNTTYG 2 cut(s) 230, 262
AsuHPI GGTGA 1 cut(s) 388
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 346
BauI CACGAG 1 cut(s) 215
Bbv12I GWGCWC 3 cut(s) 91, 346, 402
BbvI GCAGC 2 cut(s) 207, 375
BciVI GTATCC 1 cut(s) 410
BclI TGATCA 2 cut(s) 193, 307
BfmI CTRYAG 1 cut(s) 296
BfuI GTATCC 1 cut(s) 410
BglII AGATCT 1 cut(s) 109
BisI GCNGC 2 cut(s) 221, 364
BlsI GCNGC 2 cut(s) 222, 365
BplI GAGNNNNNCTC 2 cut(s) 333, 365
BsaAI YACGTR 1 cut(s) 448
BsaJI CCNNGG 2 cut(s) 322, 515
Bse118I RCCGGY 1 cut(s) 203
Bse3DI GCAATG 1 cut(s) 6
BseDI CCNNGG 2 cut(s) 322, 515
BseGI GGATG 1 cut(s) 210
BseMI GCAATG 1 cut(s) 6
BseRI GAGGAG 2 cut(s) 423, 426
BseXI GCAGC 2 cut(s) 207, 375
BsgI GTGCAG 1 cut(s) 206
BshFI GGCC 3 cut(s) 5, 58, 207
BsiHKAI GWGCWC 3 cut(s) 91, 346, 402
BsiSI CCGG 1 cut(s) 204
BsmI GAATGC 1 cut(s) 522
BsnI GGCC 3 cut(s) 5, 58, 207
Bsp1286I GDGCHC 3 cut(s) 91, 346, 402
Bsp143I GATC 4 cut(s) 109, 118, 193, 307
Bsp19I CCATGG 1 cut(s) 515
BspACI CCGC 2 cut(s) 339, 383
BspANI GGCC 3 cut(s) 5, 58, 207
BspMAI CTGCAG 1 cut(s) 300
BspPI GGATC 1 cut(s) 113
BsrDI GCAATG 1 cut(s) 6
BsrFI RCCGGY 1 cut(s) 203
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 2 cut(s) 322, 515
BssMI GATC 4 cut(s) 109, 118, 193, 307
BssSI CACGAG 1 cut(s) 215
BssT1I CCWWGG 1 cut(s) 515
Bst2BI CACGAG 1 cut(s) 215
Bst4CI ACNGT 3 cut(s) 394, 422, 537
BstBAI YACGTR 1 cut(s) 448
BstDSI CCRYGG 1 cut(s) 515
BstF5I GGATG 1 cut(s) 210
BstKTI GATC 4 cut(s) 112, 121, 196, 310
BstMBI GATC 4 cut(s) 109, 118, 193, 307
BstMWI GCNNNNNNNGC 2 cut(s) 75, 324
BstNSI RCATGY 1 cut(s) 514
BstSFI CTRYAG 1 cut(s) 296
BstV1I GCAGC 2 cut(s) 207, 375
BstX2I RGATCY 1 cut(s) 109
BstYI RGATCY 1 cut(s) 109
BsuI GTATCC 1 cut(s) 410
BsuRI GGCC 3 cut(s) 5, 58, 207
BtgI CCRYGG 1 cut(s) 515
BtsCI GGATG 1 cut(s) 210
Cfr10I RCCGGY 1 cut(s) 203
CviAII CATG 4 cut(s) 199, 511, 516, 569
CviJI RGCY 9 cut(s) 5, 53, 58, 207, 220, 303, 318, 344, 453
CviKI_1 RGCY 9 cut(s) 5, 53, 58, 207, 220, 303, 318, 344, 453
DpnI GATC 4 cut(s) 111, 120, 195, 309
DpnII GATC 4 cut(s) 109, 118, 193, 307
DraI TTTAAA 1 cut(s) 559
EaeI YGGCCR 2 cut(s) 3, 205
Ecl136II GAGCTC 1 cut(s) 344
Eco130I CCWWGG 1 cut(s) 515
Eco24I GRGCYC 1 cut(s) 346
Eco53kI GAGCTC 1 cut(s) 344
EcoICRI GAGCTC 1 cut(s) 344
EcoRI GAATTC 1 cut(s) 276
EcoT14I CCWWGG 1 cut(s) 515
EcoT38I GRGCYC 1 cut(s) 346
ErhI CCWWGG 1 cut(s) 515
FaeI CATG 4 cut(s) 202, 514, 519, 572
FaiI YATR 6 cut(s) 200, 337, 512, 517, 570, 585
FatI CATG 4 cut(s) 198, 510, 515, 568
FbaI TGATCA 2 cut(s) 193, 307
Fnu4HI GCNGC 2 cut(s) 221, 364
FokI GGATG 1 cut(s) 197
FriOI GRGCYC 1 cut(s) 346
Fsp4HI GCNGC 2 cut(s) 221, 364
GluI GCNGC 2 cut(s) 221, 364
HaeIII GGCC 3 cut(s) 5, 58, 207
HapII CCGG 1 cut(s) 204
Hin1II CATG 4 cut(s) 202, 514, 519, 572
HinfI GANTC 2 cut(s) 158, 465
HpaII CCGG 1 cut(s) 204
HphI GGTGA 1 cut(s) 388
Hpy166II GTNNAC 3 cut(s) 272, 425, 508
Hpy188I TCNGA 3 cut(s) 96, 163, 282
Hpy188III TCNNGA 1 cut(s) 236
Hpy8I GTNNAC 3 cut(s) 272, 425, 508
Hpy99I CGWCG 1 cut(s) 407
HpyAV CCTTC 1 cut(s) 274
HpyCH4III ACNGT 3 cut(s) 394, 422, 537
HpyCH4IV ACGT 1 cut(s) 447
HpyCH4V TGCA 7 cut(s) 11, 69, 149, 171, 223, 298, 363
HpyF10VI GCNNNNNNNGC 2 cut(s) 75, 324
HpySE526I ACGT 1 cut(s) 447
Hsp92II CATG 4 cut(s) 202, 514, 519, 572
Ksp22I TGATCA 2 cut(s) 193, 307
Kzo9I GATC 4 cut(s) 109, 118, 193, 307
LmnI GCTCC 3 cut(s) 341, 349, 519
LpnPI CCDG 5 cut(s) 63, 135, 165, 217, 488
Lsp1109I GCAGC 2 cut(s) 207, 375
MaeII ACGT 1 cut(s) 447
MalI GATC 4 cut(s) 111, 120, 195, 309
MboI GATC 4 cut(s) 109, 118, 193, 307
MboII GAAGA 6 cut(s) 164, 167, 252, 443, 460, 518
MflI RGATCY 1 cut(s) 109
MhlI GDGCHC 3 cut(s) 91, 346, 402
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 276, 358, 573
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 2 cut(s) 155, 442
MnlI CCTC 5 cut(s) 69, 332, 401, 404, 407
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 228, 558
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 204
Mva1269I GAATGC 1 cut(s) 522
MwoI GCNNNNNNNGC 2 cut(s) 75, 324
NcoI CCATGG 1 cut(s) 515
NdeII GATC 4 cut(s) 109, 118, 193, 307
NlaIII CATG 4 cut(s) 202, 514, 519, 572
NmeAIII GCCGAG 1 cut(s) 303
NspI RCATGY 1 cut(s) 514
PctI GAATGC 1 cut(s) 522
PfeI GAWTC 2 cut(s) 158, 465
PkrI GCNGC 2 cut(s) 222, 365
Ppu21I YACGTR 1 cut(s) 448
Psp124BI GAGCTC 1 cut(s) 346
PstI CTGCAG 1 cut(s) 300
PsuI RGATCY 1 cut(s) 109
SacI GAGCTC 1 cut(s) 346
SaqAI TTAA 2 cut(s) 228, 558
SatI GCNGC 2 cut(s) 221, 364
Sau3AI GATC 4 cut(s) 109, 118, 193, 307
SduI GDGCHC 3 cut(s) 91, 346, 402
SetI ASST 7 cut(s) 55, 222, 228, 320, 346, 450, 455
SfcI CTRYAG 1 cut(s) 296
Sse9I AATT 3 cut(s) 276, 358, 573
SsiI CCGC 2 cut(s) 339, 383
SstI GAGCTC 1 cut(s) 346
StyI CCWWGG 1 cut(s) 515
TaaI ACNGT 3 cut(s) 394, 422, 537
TaiI ACGT 1 cut(s) 450
TaqI TCGA 2 cut(s) 314, 429
TasI AATT 3 cut(s) 276, 358, 573
TfiI GAWTC 2 cut(s) 158, 465
Tru1I TTAA 2 cut(s) 228, 558
Tru9I TTAA 2 cut(s) 228, 558
TseI GCWGC 2 cut(s) 220, 363
TspDTI ATGAA 1 cut(s) 126
TspGWI ACGGA 1 cut(s) 420
XapI RAATTY 1 cut(s) 276
XceI RCATGY 1 cut(s) 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.