MD08G1144400.v1.1

Leucine Rich Repeat

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Forward (+)
14354108 .. 14354557
450 bp
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UTR
Exon/CDS
Intron
MD08G1144400.v1.1.491

Sequence Viewer

Length: 450 bp
ATGAGATGGTTAGAATCTCTCGTTTTCTTGAGGAACAAACTTATCGGTCATATTTCTCCAAGCATGTCAAAGTTAACATTTCTAAGCAACTTGAACTTGTCCTACAACTATCTGACAAGACAAATTCCAGAAAGCACACAGCTTCAGAGCGTTGATCGGTCGAGTTTCTTTGGCAATAAACTTTGTGGACATCCACAAGAGAAGTGCAGCATAAAACATGTTGGAAGTCCAGTTTCATTGGGTAATCAAAGGGAGGGAATTGCTTGTTTGCTTGAAGACGGTTGGTTCGATCTAAGCTTGGGACTAGGGTTTGCATTTGGTTTTTGGAGTGTTCTTGCCACGTTGTTGTTGAACATGTCGTGGAGCACTAAGTTTTCACGGTTCCAAAATAACATTGTAAGCAAGCTCTATGCCATAATTCAAGAGAAAACTATAAGCATTCGAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

150

Amino Acids

16.91

Weight (kDa)

9.51

Isoelectric Point (pI)

60.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 123
AcuI CTGAAG 1 cut(s) 128
AflIII ACRYGT 2 cut(s) 217, 354
AgsI TTSAA 4 cut(s) 94, 275, 352, 422
AluBI AGCT 3 cut(s) 142, 297, 406
AluI AGCT 3 cut(s) 142, 297, 406
Alw21I GWGCWC 1 cut(s) 368
ApeKI GCWGC 1 cut(s) 207
ApoI RAATTY 1 cut(s) 123
ArsI GACNNNNNNTTYG 2 cut(s) 269, 301
AsuII TTCGAA 1 cut(s) 442
BbsI GAAGAC 1 cut(s) 282
Bbv12I GWGCWC 1 cut(s) 368
BbvI GCAGC 1 cut(s) 219
BfaI CTAG 1 cut(s) 305
BisI GCNGC 1 cut(s) 208
BlsI GCNGC 1 cut(s) 209
BmiI GGNNCC 1 cut(s) 383
BpiI GAAGAC 1 cut(s) 282
Bpu14I TTCGAA 1 cut(s) 442
BpuEI CTTGAG 1 cut(s) 49
Bse1I ACTGG 1 cut(s) 230
BseGI GGATG 1 cut(s) 190
BseNI ACTGG 1 cut(s) 230
BseXI GCAGC 1 cut(s) 219
BsgI GTGCAG 1 cut(s) 226
Bsh1285I CGRYCG 1 cut(s) 161
BsiEI CGRYCG 1 cut(s) 161
BsiHKAI GWGCWC 1 cut(s) 368
BslFI GGGAC 1 cut(s) 315
BsmFI GGGAC 1 cut(s) 315
BsmI GAATGC 1 cut(s) 438
Bsp119I TTCGAA 1 cut(s) 442
Bsp1286I GDGCHC 1 cut(s) 368
Bsp143I GATC 2 cut(s) 154, 289
BspLI GGNNCC 1 cut(s) 383
BspT104I TTCGAA 1 cut(s) 442
BsrI ACTGG 1 cut(s) 230
BssMI GATC 2 cut(s) 154, 289
Bst4CI ACNGT 2 cut(s) 281, 381
BstBI TTCGAA 1 cut(s) 442
BstC8I GCNNGC 1 cut(s) 404
BstDEI CTNAG 3 cut(s) 83, 293, 369
BstF5I GGATG 1 cut(s) 190
BstKTI GATC 2 cut(s) 157, 292
BstMBI GATC 2 cut(s) 154, 289
BstMCI CGRYCG 1 cut(s) 161
BstNSI RCATGY 3 cut(s) 67, 221, 358
BstV1I GCAGC 1 cut(s) 219
BstV2I GAAGAC 1 cut(s) 282
BtsCI GGATG 1 cut(s) 190
Cac8I GCNNGC 1 cut(s) 404
CviAII CATG 3 cut(s) 64, 218, 355
CviJI RGCY 3 cut(s) 142, 297, 406
CviKI_1 RGCY 3 cut(s) 142, 297, 406
DdeI CTNAG 3 cut(s) 83, 293, 369
DpnI GATC 2 cut(s) 156, 291
DpnII GATC 2 cut(s) 154, 289
Eco57I CTGAAG 1 cut(s) 128
FaeI CATG 3 cut(s) 67, 221, 358
FaiI YATR 8 cut(s) 51, 65, 212, 219, 356, 411, 416, 434
FaqI GGGAC 1 cut(s) 315
FatI CATG 3 cut(s) 63, 217, 354
Fnu4HI GCNGC 1 cut(s) 208
FokI GGATG 1 cut(s) 177
Fsp4HI GCNGC 1 cut(s) 208
FspBI CTAG 1 cut(s) 305
GluI GCNGC 1 cut(s) 208
Hin1II CATG 3 cut(s) 67, 221, 358
HincII GTYRAC 1 cut(s) 75
HindII GTYRAC 1 cut(s) 75
HindIII AAGCTT 1 cut(s) 295
HinfI GANTC 1 cut(s) 14
HpaI GTTAAC 1 cut(s) 75
Hpy166II GTNNAC 2 cut(s) 75, 188
Hpy188I TCNGA 2 cut(s) 114, 147
Hpy188III TCNNGA 3 cut(s) 28, 128, 422
Hpy8I GTNNAC 2 cut(s) 75, 188
HpyCH4III ACNGT 2 cut(s) 281, 381
HpyCH4IV ACGT 1 cut(s) 341
HpyCH4V TGCA 2 cut(s) 207, 314
HpyF3I CTNAG 3 cut(s) 83, 293, 369
HpySE526I ACGT 1 cut(s) 341
Hsp92II CATG 3 cut(s) 67, 221, 358
KspAI GTTAAC 1 cut(s) 75
Kzo9I GATC 2 cut(s) 154, 289
LmnI GCTCC 1 cut(s) 363
LpnPI CCDG 2 cut(s) 141, 243
Lsp1109I GCAGC 1 cut(s) 219
MaeI CTAG 1 cut(s) 305
MaeII ACGT 1 cut(s) 341
MalI GATC 2 cut(s) 156, 291
MboI GATC 2 cut(s) 154, 289
MboII GAAGA 1 cut(s) 287
MhlI GDGCHC 1 cut(s) 368
MluCI AATT 3 cut(s) 123, 258, 417
MmeI TCCRAC 1 cut(s) 202
MnlI CCTC 2 cut(s) 24, 247
MseI TTAA 1 cut(s) 74
Mva1269I GAATGC 1 cut(s) 438
NdeII GATC 2 cut(s) 154, 289
NlaIII CATG 3 cut(s) 67, 221, 358
NlaIV GGNNCC 1 cut(s) 383
NspI RCATGY 3 cut(s) 67, 221, 358
NspV TTCGAA 1 cut(s) 442
PciI ACATGT 2 cut(s) 217, 354
PcsI WCGNNNNNNNCGW 1 cut(s) 285
PctI GAATGC 1 cut(s) 438
PfeI GAWTC 1 cut(s) 14
PkrI GCNGC 1 cut(s) 209
PscI ACATGT 2 cut(s) 217, 354
PspN4I GGNNCC 1 cut(s) 383
PsrI GAACNNNNNNTAC 2 cut(s) 86, 118
SaqAI TTAA 1 cut(s) 74
SatI GCNGC 1 cut(s) 208
Sau3AI GATC 2 cut(s) 154, 289
SduI GDGCHC 1 cut(s) 368
SetI ASST 4 cut(s) 144, 299, 344, 408
SfuI TTCGAA 1 cut(s) 442
SmlI CTYRAG 1 cut(s) 28
SmoI CTYRAG 1 cut(s) 28
Sse9I AATT 3 cut(s) 123, 258, 417
SspMI CTAG 1 cut(s) 305
TaaI ACNGT 2 cut(s) 281, 381
TaiI ACGT 1 cut(s) 344
TaqI TCGA 3 cut(s) 161, 288, 442
TaqII GACCGA 2 cut(s) 35, 147
TasI AATT 3 cut(s) 123, 258, 417
TfiI GAWTC 1 cut(s) 14
Tru1I TTAA 1 cut(s) 74
Tru9I TTAA 1 cut(s) 74
TseI GCWGC 1 cut(s) 207
TspDTI ATGAA 1 cut(s) 225
XapI RAATTY 1 cut(s) 123
XceI RCATGY 3 cut(s) 67, 221, 358
XspI CTAG 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.