Prupe.3G019500_v2.0.a1

regulation of response to stimulus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000281
Physical Location & Seq
Forward (+)
1415879 .. 1416841
963 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G019500.1

Sequence Viewer

Length: 681 bp
ATGAGAATTGTTTCAGTTTTCAGATTTCTAAGCATTGCAACCATTACTACCATTAGCTTATGCAATAGAAATTTGGGTGTGCCTTGTAAACAAAATGAGAGACAAGCACTTCTTCTAATGTTCAAGCAAGATCTTAAGGATCCTTCAAATAGGCTTTTATCTTGGGTTGGTGAGGGAGATTGTTGCAATTGGACTGGAGTTGTCTGCGACAATTTAACCGGTCGTGTCCGTGAGCCGCACCTTGGAAATTATTATTCAGATGAGTATTTGAATTACAGTTTGTATCAAGAAAACTCTTTGGGTGGCAAGGTAAATACTTCTCTACCAAATTTAAAGCATCTGAGCTACTTGGATCTAAGCAACAATGATTTTGGAGGAATACAGATTCCTAGCTTCTTAGGACTACCTCAATGGTTGTACACTTGTAGCAATCTTGAGTCCCTATCCATTGGAAACTTGACAGCCATTGTCAATCTTGACTTGTCTGCTAATCAACTTGGAGGGAAAATCCCAAACTCATTGGGAAATCTTTGCCCAATTCCAGTGTCCTTGGGAAATCTGTTATTCCTAGAAGAGGCAAGCATTTCTGAAAATCATTTTGATAGAACTCTTCCAAAAACTACTGGTCAACTCAAAATGGTAACGGTGTCTTATGTAAAGAGTATAGCCGTCCGGCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_6 LRR_8

Protein Analysis

227

Amino Acids

25.05

Weight (kDa)

6.81

Isoelectric Point (pI)

19.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 236
AclWI GGATC 3 cut(s) 134, 147, 360
AcsI RAATTY 2 cut(s) 70, 328
AfaI GTAC 1 cut(s) 419
AfiI CCNNNNNNNGG 2 cut(s) 242, 574
AflII CTTAAG 1 cut(s) 134
AgeI ACCGGT 1 cut(s) 218
AgsI TTSAA 3 cut(s) 124, 147, 271
AluBI AGCT 3 cut(s) 57, 345, 393
AluI AGCT 3 cut(s) 57, 345, 393
Alw26I GTCTC 1 cut(s) 94
AlwI GGATC 3 cut(s) 134, 147, 360
ApoI RAATTY 2 cut(s) 70, 328
AsiGI ACCGGT 1 cut(s) 218
Asp700I GAANNNNTTC 1 cut(s) 10
AsuHPI GGTGA 1 cut(s) 182
BamHI GGATCC 1 cut(s) 139
BceAI ACGGC 1 cut(s) 653
BcoDI GTCTC 1 cut(s) 94
BfaI CTAG 2 cut(s) 390, 569
BfrI CTTAAG 1 cut(s) 134
BglII AGATCT 1 cut(s) 130
BisI GCNGC 1 cut(s) 236
BlsI GCNGC 1 cut(s) 237
BmiI GGNNCC 1 cut(s) 141
BmsI GCATC 1 cut(s) 346
BpmI CTGGAG 1 cut(s) 216
BpuEI CTTGAG 1 cut(s) 455
BsaJI CCNNGG 2 cut(s) 241, 549
BsaWI WCCGGW 1 cut(s) 218
Bsc4I CCNNNNNNNGG 2 cut(s) 242, 574
Bse118I RCCGGY 1 cut(s) 218
Bse1I ACTGG 3 cut(s) 199, 542, 628
Bse3DI GCAATG 1 cut(s) 33
BseDI CCNNGG 2 cut(s) 241, 549
BseLI CCNNNNNNNGG 2 cut(s) 242, 574
BseMI GCAATG 1 cut(s) 33
BseMII CTCAG 1 cut(s) 332
BseNI ACTGG 3 cut(s) 199, 542, 628
Bsh1285I CGRYCG 1 cut(s) 223
BshTI ACCGGT 1 cut(s) 218
BsiEI CGRYCG 1 cut(s) 223
BsiSI CCGG 2 cut(s) 219, 673
BslFI GGGAC 1 cut(s) 424
BslI CCNNNNNNNGG 2 cut(s) 242, 574
BsmAI GTCTC 1 cut(s) 94
BsmFI GGGAC 1 cut(s) 424
Bsp1407I TGTACA 1 cut(s) 417
Bsp143I GATC 3 cut(s) 130, 139, 352
BspACI CCGC 1 cut(s) 236
BspCNI CTCAG 1 cut(s) 333
BspLI GGNNCC 1 cut(s) 141
BspPI GGATC 3 cut(s) 134, 147, 360
BspTI CTTAAG 1 cut(s) 134
BsrDI GCAATG 1 cut(s) 33
BsrFI RCCGGY 1 cut(s) 218
BsrGI TGTACA 1 cut(s) 417
BsrI ACTGG 3 cut(s) 199, 542, 628
BssAI RCCGGY 1 cut(s) 218
BssECI CCNNGG 2 cut(s) 241, 549
BssMI GATC 3 cut(s) 130, 139, 352
BssT1I CCWWGG 2 cut(s) 241, 549
Bst4CI ACNGT 2 cut(s) 278, 646
Bst6I CTCTTC 2 cut(s) 567, 615
BstAFI CTTAAG 1 cut(s) 134
BstAUI TGTACA 1 cut(s) 417
BstC8I GCNNGC 1 cut(s) 580
BstDEI CTNAG 4 cut(s) 29, 341, 356, 397
BstENI CCTNNNNNAGG 1 cut(s) 572
BstKTI GATC 3 cut(s) 133, 142, 355
BstMAI GTCTC 1 cut(s) 94
BstMBI GATC 3 cut(s) 130, 139, 352
BstMCI CGRYCG 1 cut(s) 223
BstX2I RGATCY 3 cut(s) 130, 139, 352
BstYI RGATCY 3 cut(s) 130, 139, 352
BtsIMutI CAGTG 1 cut(s) 549
Cac8I GCNNGC 1 cut(s) 580
Cfr10I RCCGGY 1 cut(s) 218
Csp6I GTAC 1 cut(s) 418
CspAI ACCGGT 1 cut(s) 218
CviJI RGCY 8 cut(s) 57, 154, 235, 345, 393, 464, 668, 676
CviKI_1 RGCY 8 cut(s) 57, 154, 235, 345, 393, 464, 668, 676
CviQI GTAC 1 cut(s) 418
DdeI CTNAG 4 cut(s) 29, 341, 356, 397
DpnI GATC 3 cut(s) 132, 141, 354
DpnII GATC 3 cut(s) 130, 139, 352
DraI TTTAAA 1 cut(s) 333
Eam1104I CTCTTC 2 cut(s) 567, 615
EarI CTCTTC 2 cut(s) 567, 615
Eco130I CCWWGG 2 cut(s) 241, 549
EcoNI CCTNNNNNAGG 1 cut(s) 572
EcoT14I CCWWGG 2 cut(s) 241, 549
ErhI CCWWGG 2 cut(s) 241, 549
FaiI YATR 4 cut(s) 61, 654, 665, 679
FalI AAGNNNNNCTT 2 cut(s) 96, 128
FaqI GGGAC 1 cut(s) 424
Fnu4HI GCNGC 1 cut(s) 236
Fsp4HI GCNGC 1 cut(s) 236
FspBI CTAG 2 cut(s) 390, 569
GluI GCNGC 1 cut(s) 236
GsuI CTGGAG 1 cut(s) 216
HapII CCGG 2 cut(s) 219, 673
HincII GTYRAC 1 cut(s) 629
HindII GTYRAC 1 cut(s) 629
HinfI GANTC 2 cut(s) 385, 437
HpaII CCGG 2 cut(s) 219, 673
HphI GGTGA 1 cut(s) 182
Hpy166II GTNNAC 3 cut(s) 89, 420, 629
Hpy188I TCNGA 4 cut(s) 23, 259, 342, 589
Hpy188III TCNNGA 3 cut(s) 287, 434, 476
Hpy8I GTNNAC 3 cut(s) 89, 420, 629
HpyAV CCTTC 1 cut(s) 153
HpyCH4III ACNGT 2 cut(s) 278, 646
HpyCH4V TGCA 3 cut(s) 38, 63, 186
HpyF3I CTNAG 4 cut(s) 29, 341, 356, 397
Kzo9I GATC 3 cut(s) 130, 139, 352
LpnPI CCDG 4 cut(s) 180, 232, 555, 609
LweI GCATC 1 cut(s) 346
MaeI CTAG 2 cut(s) 390, 569
MaeIII GTNAC 1 cut(s) 640
MalI GATC 3 cut(s) 132, 141, 354
MboI GATC 3 cut(s) 130, 139, 352
MboII GAAGA 3 cut(s) 104, 584, 602
MfeI CAATTG 1 cut(s) 187
MflI RGATCY 3 cut(s) 130, 139, 352
MluCI AATT 8 cut(s) 6, 70, 187, 211, 247, 271, 328, 537
MlyI GAGTC 1 cut(s) 446
MnlI CCTC 5 cut(s) 166, 368, 417, 494, 568
MroXI GAANNNNTTC 1 cut(s) 10
MseI TTAA 3 cut(s) 135, 215, 332
MspCI CTTAAG 1 cut(s) 134
MspI CCGG 2 cut(s) 219, 673
MunI CAATTG 1 cut(s) 187
NdeII GATC 3 cut(s) 130, 139, 352
NlaIV GGNNCC 1 cut(s) 141
PdmI GAANNNNTTC 1 cut(s) 10
PfeI GAWTC 1 cut(s) 385
PinAI ACCGGT 1 cut(s) 218
PkrI GCNGC 1 cut(s) 237
PleI GAGTC 1 cut(s) 445
PpsI GAGTC 1 cut(s) 445
PspN4I GGNNCC 1 cut(s) 141
PsuI RGATCY 3 cut(s) 130, 139, 352
RsaI GTAC 1 cut(s) 419
RsaNI GTAC 1 cut(s) 418
SaqAI TTAA 3 cut(s) 135, 215, 332
SatI GCNGC 1 cut(s) 236
Sau3AI GATC 3 cut(s) 130, 139, 352
SchI GAGTC 1 cut(s) 446
SetI ASST 6 cut(s) 59, 243, 312, 347, 395, 409
SfaNI GCATC 1 cut(s) 346
SmlI CTYRAG 2 cut(s) 134, 434
SmoI CTYRAG 2 cut(s) 134, 434
Sse9I AATT 8 cut(s) 6, 70, 187, 211, 247, 271, 328, 537
SsiI CCGC 1 cut(s) 236
SspMI CTAG 2 cut(s) 390, 569
StyI CCWWGG 2 cut(s) 241, 549
TaaI ACNGT 2 cut(s) 278, 646
TasI AATT 8 cut(s) 6, 70, 187, 211, 247, 271, 328, 537
TatI WGTACW 1 cut(s) 417
TauI GCSGC 1 cut(s) 238
TfiI GAWTC 1 cut(s) 385
Tru1I TTAA 3 cut(s) 135, 215, 332
Tru9I TTAA 3 cut(s) 135, 215, 332
TscAI CASTG 1 cut(s) 549
TspGWI ACGGA 1 cut(s) 218
TspRI CASTG 1 cut(s) 549
Vha464I CTTAAG 1 cut(s) 134
XagI CCTNNNNNAGG 1 cut(s) 572
XapI RAATTY 2 cut(s) 70, 328
XmnI GAANNNNTTC 1 cut(s) 10
XspI CTAG 2 cut(s) 390, 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.