MD08G1239200.v1.1

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0000281
Physical Location & Seq
Forward (+)
30592681 .. 30593115
435 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1239200.v1.1.491

Sequence Viewer

Length: 435 bp
ATGGTAATGTTAGAGTCTCTTGATCTTTCCATGAACAAACTTTCTGGTGAAATTTCTCCAAACATGTCGAGGTTGACATATCTTGGTACCTTGAATTTGTCTTATAACAATTTGACCGGACAGATTCCCCAATGCACACAGCTCGGGGGCTTTGATCAGAACAGCTATATTGGCAATGAACTTTGCGGATTTCCACTCAACGTGAGCTGCAAGGAAAAGCGGACAATGCAGCCAGTAGTTGTTCAAAAACACATGGGAAGCCATTTACTCGAAGACGGTTGGTTCTATCTGAGCTTGGGACTAGGCTTTCTGTTCGGTTTTTGGAGTGTTCTTGGTTCGTTGCTTCTCAACATGCCATGGAGCTTTCGCTTTTCTCAGTTCCAGAATAGCATTGTTCGTAGACTATATGGTATAATTGTGGAATATTGTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

145

Amino Acids

16.34

Weight (kDa)

6.7

Isoelectric Point (pI)

40.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 105
Acc65I GGTACC 1 cut(s) 86
AccB1I GGYRCC 1 cut(s) 86
AccI GTMKAC 1 cut(s) 400
AciI CCGC 2 cut(s) 186, 220
AcsI RAATTY 2 cut(s) 51, 94
AfaI GTAC 1 cut(s) 88
AflIII ACRYGT 1 cut(s) 63
AgsI TTSAA 2 cut(s) 94, 245
AluBI AGCT 5 cut(s) 142, 165, 207, 294, 363
AluI AGCT 5 cut(s) 142, 165, 207, 294, 363
Alw26I GTCTC 1 cut(s) 21
Ama87I CYCGRG 1 cut(s) 143
ApeKI GCWGC 2 cut(s) 207, 229
ApoI RAATTY 2 cut(s) 51, 94
Asp718I GGTACC 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 59
AvaI CYCGRG 1 cut(s) 143
BanI GGYRCC 1 cut(s) 86
BbsI GAAGAC 1 cut(s) 279
BbvI GCAGC 2 cut(s) 194, 241
BcgI CGANNNNNNTGC 2 cut(s) 124, 158
BclI TGATCA 1 cut(s) 154
BcoDI GTCTC 1 cut(s) 21
BfaI CTAG 1 cut(s) 302
BisI GCNGC 2 cut(s) 208, 230
BlsI GCNGC 2 cut(s) 209, 231
BmeT110I CYCGRG 1 cut(s) 143
BmiI GGNNCC 1 cut(s) 88
BpiI GAAGAC 1 cut(s) 279
BsaJI CCNNGG 1 cut(s) 356
BsaWI WCCGGW 1 cut(s) 116
Bse1I ACTGG 1 cut(s) 233
Bse3DI GCAATG 1 cut(s) 181
BseDI CCNNGG 1 cut(s) 356
BseMI GCAATG 1 cut(s) 181
BseMII CTCAG 2 cut(s) 281, 389
BseNI ACTGG 1 cut(s) 233
BseXI GCAGC 2 cut(s) 194, 241
BshNI GGYRCC 1 cut(s) 86
BsiHKCI CYCGRG 1 cut(s) 143
BsiSI CCGG 1 cut(s) 117
BslFI GGGAC 1 cut(s) 312
BsmAI GTCTC 1 cut(s) 21
BsmFI GGGAC 1 cut(s) 312
BsoBI CYCGRG 1 cut(s) 143
Bsp143I GATC 2 cut(s) 22, 154
Bsp19I CCATGG 1 cut(s) 356
BspACI CCGC 2 cut(s) 186, 220
BspCNI CTCAG 2 cut(s) 282, 388
BspLI GGNNCC 1 cut(s) 88
BspT107I GGYRCC 1 cut(s) 86
BsrDI GCAATG 1 cut(s) 181
BsrI ACTGG 1 cut(s) 233
BssECI CCNNGG 1 cut(s) 356
BssMI GATC 2 cut(s) 22, 154
BssT1I CCWWGG 1 cut(s) 356
Bst4CI ACNGT 1 cut(s) 278
BstDEI CTNAG 2 cut(s) 290, 375
BstDSI CCRYGG 1 cut(s) 356
BstKTI GATC 2 cut(s) 25, 157
BstMAI GTCTC 1 cut(s) 21
BstMBI GATC 2 cut(s) 22, 154
BstMWI GCNNNNNNNGC 2 cut(s) 171, 226
BstNSI RCATGY 2 cut(s) 67, 355
BstV1I GCAGC 2 cut(s) 194, 241
BstV2I GAAGAC 1 cut(s) 279
BtgI CCRYGG 1 cut(s) 356
Csp6I GTAC 1 cut(s) 87
CviAII CATG 5 cut(s) 31, 64, 253, 352, 357
CviJI RGCY 9 cut(s) 142, 150, 165, 207, 232, 261, 294, 306, 363
CviKI_1 RGCY 9 cut(s) 142, 150, 165, 207, 232, 261, 294, 306, 363
CviQI GTAC 1 cut(s) 87
DdeI CTNAG 2 cut(s) 290, 375
DpnI GATC 2 cut(s) 24, 156
DpnII GATC 2 cut(s) 22, 154
Eco130I CCWWGG 1 cut(s) 356
Eco88I CYCGRG 1 cut(s) 143
EcoT14I CCWWGG 1 cut(s) 356
ErhI CCWWGG 1 cut(s) 356
FaeI CATG 5 cut(s) 34, 67, 256, 355, 360
FaqI GGGAC 1 cut(s) 312
FatI CATG 5 cut(s) 30, 63, 252, 351, 356
FbaI TGATCA 1 cut(s) 154
FblI GTMKAC 1 cut(s) 400
Fnu4HI GCNGC 2 cut(s) 208, 230
Fsp4HI GCNGC 2 cut(s) 208, 230
FspBI CTAG 1 cut(s) 302
GluI GCNGC 2 cut(s) 208, 230
HapII CCGG 1 cut(s) 117
Hin1II CATG 5 cut(s) 34, 67, 256, 355, 360
HincII GTYRAC 1 cut(s) 75
HindII GTYRAC 1 cut(s) 75
HinfI GANTC 2 cut(s) 14, 124
HpaII CCGG 1 cut(s) 117
HphI GGTGA 1 cut(s) 59
Hpy166II GTNNAC 2 cut(s) 75, 401
Hpy188I TCNGA 2 cut(s) 159, 291
Hpy188III TCNNGA 2 cut(s) 20, 382
Hpy8I GTNNAC 2 cut(s) 75, 401
HpyCH4III ACNGT 1 cut(s) 278
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 3 cut(s) 135, 210, 229
HpyF10VI GCNNNNNNNGC 2 cut(s) 171, 226
HpyF3I CTNAG 2 cut(s) 290, 375
HpySE526I ACGT 1 cut(s) 201
Hsp92II CATG 5 cut(s) 34, 67, 256, 355, 360
KpnI GGTACC 1 cut(s) 90
Ksp22I TGATCA 1 cut(s) 154
Kzo9I GATC 2 cut(s) 22, 154
LmnI GCTCC 1 cut(s) 360
LpnPI CCDG 4 cut(s) 30, 130, 246, 395
Lsp1109I GCAGC 2 cut(s) 194, 241
MaeI CTAG 1 cut(s) 302
MaeII ACGT 1 cut(s) 201
MalI GATC 2 cut(s) 24, 156
MboI GATC 2 cut(s) 22, 154
MboII GAAGA 1 cut(s) 284
MluCI AATT 4 cut(s) 51, 94, 109, 414
MlyI GAGTC 1 cut(s) 23
MnlI CCTC 1 cut(s) 63
MspI CCGG 1 cut(s) 117
MwoI GCNNNNNNNGC 2 cut(s) 171, 226
NcoI CCATGG 1 cut(s) 356
NdeII GATC 2 cut(s) 22, 154
NlaIII CATG 5 cut(s) 34, 67, 256, 355, 360
NlaIV GGNNCC 1 cut(s) 88
NspI RCATGY 2 cut(s) 67, 355
PciI ACATGT 1 cut(s) 63
PfeI GAWTC 1 cut(s) 124
PkrI GCNGC 2 cut(s) 209, 231
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
PscI ACATGT 1 cut(s) 63
PsiI TTATAA 1 cut(s) 105
PspN4I GGNNCC 1 cut(s) 88
RsaI GTAC 1 cut(s) 88
RsaNI GTAC 1 cut(s) 87
SatI GCNGC 2 cut(s) 208, 230
Sau3AI GATC 2 cut(s) 22, 154
SchI GAGTC 1 cut(s) 23
SetI ASST 8 cut(s) 74, 92, 144, 167, 204, 209, 296, 365
Sse9I AATT 4 cut(s) 51, 94, 109, 414
SsiI CCGC 2 cut(s) 186, 220
SspI AATATT 1 cut(s) 425
SspMI CTAG 1 cut(s) 302
StyI CCWWGG 1 cut(s) 356
TaaI ACNGT 1 cut(s) 278
TaiI ACGT 1 cut(s) 204
TaqI TCGA 2 cut(s) 68, 270
TasI AATT 4 cut(s) 51, 94, 109, 414
TfiI GAWTC 1 cut(s) 124
TseI GCWGC 2 cut(s) 207, 229
TspDTI ATGAA 2 cut(s) 47, 192
XapI RAATTY 2 cut(s) 51, 94
XceI RCATGY 2 cut(s) 67, 355
XmiI GTMKAC 1 cut(s) 400
XspI CTAG 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.