FvH4_5g27300

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000281
Physical Location & Seq
Forward (+)
18548988 .. 18549689
702 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g27300.t1

Sequence Viewer

Length: 285 bp
ATGGAAATTTCGGTGTGCGGAGACTGTTGCTACTGGACTGGAGTTGTCTGTGATGATGCAGCAGATCACATCCTGGAGCTCCACCTCAGTGATTCTTATTACAGCTCTAGATTGAGTGGAGCAGAGTTCGGAGGAATGATTCCTTATCAACTGAGGAATCTCTCCAATCTGCTCGATCTCCGTCTGGATGAGATGATTTTTGGCCTCGAGAAGCAAAGAGCAGAAAGTTTCATGTACTCGGTCCAGAAGCTGATATTCCGGAGGTTGAACAGTTCAGTGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

95

Amino Acids

10.74

Weight (kDa)

4.77

Isoelectric Point (pI)

43.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 258
AciI CCGC 1 cut(s) 18
AcsI RAATTY 1 cut(s) 6
AfaI GTAC 1 cut(s) 236
AgsI TTSAA 1 cut(s) 268
AjnI CCWGG 1 cut(s) 72
AleI CACNNNNGTG 1 cut(s) 87
AluBI AGCT 3 cut(s) 79, 105, 250
AluI AGCT 3 cut(s) 79, 105, 250
Alw21I GWGCWC 1 cut(s) 81
Alw26I GTCTC 1 cut(s) 15
AlwNI CAGNNNCTG 1 cut(s) 250
Ama87I CYCGRG 1 cut(s) 206
Aor13HI TCCGGA 1 cut(s) 258
AoxI GGCC 1 cut(s) 202
ApeKI GCWGC 1 cut(s) 59
ApoI RAATTY 1 cut(s) 6
AspS9I GGNCC 1 cut(s) 241
AvaI CYCGRG 1 cut(s) 206
AvaII GGWCC 1 cut(s) 241
BanII GRGCYC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 71
BciT130I CCWGG 1 cut(s) 74
BcoDI GTCTC 1 cut(s) 15
BfaI CTAG 1 cut(s) 108
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
Bme1390I CCNGG 1 cut(s) 74
Bme18I GGWCC 1 cut(s) 241
BmeT110I CYCGRG 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 241
BmrFI CCNGG 1 cut(s) 74
BmsI GCATC 1 cut(s) 46
BpmI CTGGAG 2 cut(s) 60, 95
BsaWI WCCGGW 1 cut(s) 258
Bse1I ACTGG 2 cut(s) 38, 43
BseAI TCCGGA 1 cut(s) 258
BseBI CCWGG 1 cut(s) 74
BseGI GGATG 2 cut(s) 69, 193
BseMII CTCAG 2 cut(s) 100, 143
BseNI ACTGG 2 cut(s) 38, 43
BseXI GCAGC 1 cut(s) 71
BshFI GGCC 1 cut(s) 204
BsiHKAI GWGCWC 1 cut(s) 81
BsiHKCI CYCGRG 1 cut(s) 206
BsiSI CCGG 1 cut(s) 259
BsmAI GTCTC 1 cut(s) 15
BsnI GGCC 1 cut(s) 204
BsoBI CYCGRG 1 cut(s) 206
Bsp1286I GDGCHC 1 cut(s) 81
Bsp13I TCCGGA 1 cut(s) 258
Bsp143I GATC 2 cut(s) 64, 175
BspACI CCGC 1 cut(s) 18
BspANI GGCC 1 cut(s) 204
BspCNI CTCAG 2 cut(s) 99, 144
BspEI TCCGGA 1 cut(s) 258
BsrI ACTGG 2 cut(s) 38, 43
BssMI GATC 2 cut(s) 64, 175
Bst2UI CCWGG 1 cut(s) 74
Bst4CI ACNGT 2 cut(s) 26, 272
BstDEI CTNAG 2 cut(s) 86, 152
BstF5I GGATG 2 cut(s) 69, 193
BstKTI GATC 2 cut(s) 67, 178
BstMAI GTCTC 1 cut(s) 15
BstMBI GATC 2 cut(s) 64, 175
BstNI CCWGG 1 cut(s) 74
BstSCI CCNGG 1 cut(s) 72
BstV1I GCAGC 1 cut(s) 71
BsuRI GGCC 1 cut(s) 204
BtsCI GGATG 2 cut(s) 69, 193
BtsIMutI CAGTG 2 cut(s) 94, 282
CaiI CAGNNNCTG 1 cut(s) 250
Cfr13I GGNCC 1 cut(s) 241
Csp6I GTAC 1 cut(s) 235
CviAII CATG 1 cut(s) 232
CviJI RGCY 4 cut(s) 79, 105, 204, 250
CviKI_1 RGCY 4 cut(s) 79, 105, 204, 250
CviQI GTAC 1 cut(s) 235
DdeI CTNAG 2 cut(s) 86, 152
DpnI GATC 2 cut(s) 66, 177
DpnII GATC 2 cut(s) 64, 175
Ecl136II GAGCTC 1 cut(s) 79
Eco24I GRGCYC 1 cut(s) 81
Eco47I GGWCC 1 cut(s) 241
Eco53kI GAGCTC 1 cut(s) 79
Eco88I CYCGRG 1 cut(s) 206
EcoICRI GAGCTC 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 72
EcoT38I GRGCYC 1 cut(s) 81
FaeI CATG 1 cut(s) 235
FaiI YATR 1 cut(s) 233
FatI CATG 1 cut(s) 231
Fnu4HI GCNGC 1 cut(s) 60
FokI GGATG 2 cut(s) 56, 200
FriOI GRGCYC 1 cut(s) 81
Fsp4HI GCNGC 1 cut(s) 60
FspBI CTAG 1 cut(s) 108
GluI GCNGC 1 cut(s) 60
GsuI CTGGAG 2 cut(s) 60, 95
HaeIII GGCC 1 cut(s) 204
HapII CCGG 1 cut(s) 259
Hin1II CATG 1 cut(s) 235
HinfI GANTC 3 cut(s) 92, 139, 157
HpaII CCGG 1 cut(s) 259
Hpy188I TCNGA 1 cut(s) 131
Hpy188III TCNNGA 5 cut(s) 108, 185, 208, 244, 259
HpyCH4III ACNGT 2 cut(s) 26, 272
HpyCH4V TGCA 1 cut(s) 59
HpyF3I CTNAG 2 cut(s) 86, 152
Hsp92II CATG 1 cut(s) 235
Kpn2I TCCGGA 1 cut(s) 258
Kzo9I GATC 2 cut(s) 64, 175
LmnI GCTCC 3 cut(s) 76, 84, 119
LpnPI CCDG 7 cut(s) 19, 24, 59, 86, 170, 257, 272
Lsp1109I GCAGC 1 cut(s) 71
LweI GCATC 1 cut(s) 46
MaeI CTAG 1 cut(s) 108
MalI GATC 2 cut(s) 66, 177
MboI GATC 2 cut(s) 64, 175
MhlI GDGCHC 1 cut(s) 81
MluCI AATT 1 cut(s) 6
MnlI CCTC 5 cut(s) 95, 125, 147, 215, 255
MroI TCCGGA 1 cut(s) 258
MseI TTAA 1 cut(s) 283
MslI CAYNNNNRTG 1 cut(s) 87
MspI CCGG 1 cut(s) 259
MspR9I CCNGG 1 cut(s) 74
MvaI CCWGG 1 cut(s) 74
NdeII GATC 2 cut(s) 64, 175
NlaIII CATG 1 cut(s) 235
OliI CACNNNNGTG 1 cut(s) 87
PaeR7I CTCGAG 1 cut(s) 206
PfeI GAWTC 3 cut(s) 92, 139, 157
PfoI TCCNGGA 1 cut(s) 72
PkrI GCNGC 1 cut(s) 61
Psp124BI GAGCTC 1 cut(s) 81
Psp6I CCWGG 1 cut(s) 72
PspGI CCWGG 1 cut(s) 72
PspPI GGNCC 1 cut(s) 241
PstNI CAGNNNCTG 1 cut(s) 250
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
RseI CAYNNNNRTG 1 cut(s) 87
SacI GAGCTC 1 cut(s) 81
SaqAI TTAA 1 cut(s) 283
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 2 cut(s) 64, 175
Sau96I GGNCC 1 cut(s) 241
ScrFI CCNGG 1 cut(s) 74
SduI GDGCHC 1 cut(s) 81
SetI ASST 5 cut(s) 81, 87, 107, 252, 266
SfaNI GCATC 1 cut(s) 46
Sfr274I CTCGAG 1 cut(s) 206
SinI GGWCC 1 cut(s) 241
SlaI CTCGAG 1 cut(s) 206
SmiMI CAYNNNNRTG 1 cut(s) 87
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 1 cut(s) 6
SsiI CCGC 1 cut(s) 18
SspMI CTAG 1 cut(s) 108
SstI GAGCTC 1 cut(s) 81
StyD4I CCNGG 1 cut(s) 72
TaaI ACNGT 2 cut(s) 26, 272
TaqI TCGA 2 cut(s) 174, 207
TaqII GACCGA 1 cut(s) 229
TasI AATT 1 cut(s) 6
TatI WGTACW 1 cut(s) 234
TfiI GAWTC 3 cut(s) 92, 139, 157
Tru1I TTAA 1 cut(s) 283
Tru9I TTAA 1 cut(s) 283
TscAI CASTG 2 cut(s) 94, 282
TseI GCWGC 1 cut(s) 59
TspDTI ATGAA 1 cut(s) 220
TspGWI ACGGA 1 cut(s) 170
TspRI CASTG 2 cut(s) 94, 282
VpaK11BI GGWCC 1 cut(s) 241
XapI RAATTY 1 cut(s) 6
XbaI TCTAGA 1 cut(s) 107
XhoI CTCGAG 1 cut(s) 206
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.