Rroxscaffold_4G00284320

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000281
Physical Location & Seq
Reverse (-)
5945181 .. 5946141
961 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00284320.1

Sequence Viewer

Length: 804 bp
ATGGGCGGTGGAGGAGACCGTTGCAAATGGACTGGAGTGGTCTGTGATAACTTAACCGGCCATATCCTCGAGCTCCATCTCGGTAAGCCTAACAATTGGGTGGATATCAACCCTATCTTGGGCGGTAAGATAAATCCTTCCTTGCTCGGTTTAAAGCATCTCAATTACTTAGATCTAAGTGAAAATGATTTTCAAGGAATTAAAATTCCCACCTGCTTTGGTTCTCTTAAAAGTTTAAGATATCTTAACCTCTCGTCTGCCGGGTTCGAGGGAACAATCCCTCATCAATCGGGAAATCTCTCCGATCTACGCGATCTGCGTCTTGATAGTTACAATGTTTTCAATAAGGTTGAAAGCCTTCAATGGATATCTGGTCTTTCTCGGTTGGAACACTTGGACATGAGTTATGTTAATATTAGCCAAGCAACCGATTGGTTGCAAGCGATTAACATGCTCCCCTCTTTGGTAGAGTTGCATTTGTCCCATTGTCCAATTCCTGGTAGTCCCCACAATATCACATCTCTTAGGGAAATTGATTTGGCAGAGAATAGTCTCACGCTTTTAATACCCAAGTGGCTGTTTAACCACAAAGACCTCACGCTTTTGAGACTAGGATACAATCAATTTGGAGGGCCGTTTCCGGGTGGTATTGTGAATATCACTAGTCTTAAGGTTCTTCATCCGGAATCGAACAATTTCCATTCTTCCATACCTAAATGGTTGTATAGCCTTAGCAATCTTGAATCCATACGCCTTTCTAACAATAAGTTGGATGGTGAAATTCGAGTGACATTGGAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

267

Amino Acids

29.75

Weight (kDa)

6.24

Isoelectric Point (pI)

38.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 49 - 86 3.8e-06 Leucine rich repeat
LRR_14 PF23598 50 - 160 1.9e-07 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 221
Acc36I ACCTGC 1 cut(s) 221
AccB7I CCANNNNNTGG 1 cut(s) 497
AccII CGCG 1 cut(s) 312
AccIII TCCGGA 1 cut(s) 682
AciI CCGC 2 cut(s) 6, 123
AcoI YGGCCR 1 cut(s) 58
AcsI RAATTY 2 cut(s) 204, 780
AfiI CCNNNNNNNGG 5 cut(s) 118, 119, 463, 497, 641
AflII CTTAAG 1 cut(s) 668
AgsI TTSAA 5 cut(s) 194, 343, 353, 362, 743
AhlI ACTAGT 1 cut(s) 662
AjnI CCWGG 1 cut(s) 496
AluBI AGCT 1 cut(s) 73
AluI AGCT 1 cut(s) 73
Alw21I GWGCWC 1 cut(s) 75
Alw26I GTCTC 3 cut(s) 9, 557, 601
Ama87I CYCGRG 1 cut(s) 68
Aor13HI TCCGGA 1 cut(s) 682
AoxI GGCC 2 cut(s) 58, 632
ApoI RAATTY 2 cut(s) 204, 780
Asp700I GAANNNNTTC 2 cut(s) 357, 695
AspS9I GGNCC 1 cut(s) 632
AsuC2I CCSGG 2 cut(s) 262, 642
AsuHPI GGTGA 1 cut(s) 788
AvaI CYCGRG 1 cut(s) 68
BanII GRGCYC 1 cut(s) 75
Bbv12I GWGCWC 1 cut(s) 75
BccI CCATC 2 cut(s) 84, 767
BceAI ACGGC 1 cut(s) 619
BcgI CGANNNNNNTGC 2 cut(s) 433, 467
BciT130I CCWGG 1 cut(s) 498
BciVI GTATCC 1 cut(s) 608
BcnI CCSGG 2 cut(s) 262, 642
BcoDI GTCTC 3 cut(s) 9, 557, 601
BcuI ACTAGT 1 cut(s) 662
BfaI CTAG 2 cut(s) 611, 663
BfrI CTTAAG 1 cut(s) 668
BfuAI ACCTGC 1 cut(s) 221
BfuI GTATCC 1 cut(s) 608
BglII AGATCT 1 cut(s) 172
Bme1390I CCNGG 3 cut(s) 262, 498, 642
BmeT110I CYCGRG 1 cut(s) 68
BmgT120I GGNCC 1 cut(s) 632
BmrFI CCNGG 3 cut(s) 262, 498, 642
BmsI GCATC 1 cut(s) 166
BpmI CTGGAG 1 cut(s) 54
Bpu10I CCTNAGC 1 cut(s) 731
BpuMI CCSGG 2 cut(s) 262, 642
BsaI GGTCTC 1 cut(s) 9
BsaWI WCCGGW 1 cut(s) 682
Bsc4I CCNNNNNNNGG 5 cut(s) 118, 119, 463, 497, 641
Bse118I RCCGGY 1 cut(s) 56
Bse1I ACTGG 1 cut(s) 37
BseAI TCCGGA 1 cut(s) 682
BseBI CCWGG 1 cut(s) 498
BseGI GGATG 2 cut(s) 679, 778
BseLI CCNNNNNNNGG 5 cut(s) 118, 119, 463, 497, 641
BseNI ACTGG 1 cut(s) 37
BseRI GAGGAG 1 cut(s) 27
Bsh1236I CGCG 1 cut(s) 312
BshFI GGCC 2 cut(s) 60, 634
BsiHKAI GWGCWC 1 cut(s) 75
BsiHKCI CYCGRG 1 cut(s) 68
BsiSI CCGG 4 cut(s) 57, 261, 641, 683
BslFI GGGAC 2 cut(s) 466, 489
BslI CCNNNNNNNGG 5 cut(s) 118, 119, 463, 497, 641
BsmAI GTCTC 3 cut(s) 9, 557, 601
BsmFI GGGAC 2 cut(s) 466, 489
BsnI GGCC 2 cut(s) 60, 634
Bso31I GGTCTC 1 cut(s) 9
BsoBI CYCGRG 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 75
Bsp13I TCCGGA 1 cut(s) 682
Bsp143I GATC 3 cut(s) 172, 304, 313
BspACI CCGC 2 cut(s) 6, 123
BspANI GGCC 2 cut(s) 60, 634
BspEI TCCGGA 1 cut(s) 682
BspFNI CGCG 1 cut(s) 312
BspMI ACCTGC 1 cut(s) 221
BspTI CTTAAG 1 cut(s) 668
BspTNI GGTCTC 1 cut(s) 9
BsrFI RCCGGY 1 cut(s) 56
BsrI ACTGG 1 cut(s) 37
BssAI RCCGGY 1 cut(s) 56
BssMI GATC 3 cut(s) 172, 304, 313
Bst2UI CCWGG 1 cut(s) 498
Bst4CI ACNGT 1 cut(s) 20
BstAFI CTTAAG 1 cut(s) 668
BstC8I GCNNGC 1 cut(s) 441
BstDEI CTNAG 4 cut(s) 169, 176, 524, 731
BstF5I GGATG 2 cut(s) 679, 778
BstFNI CGCG 1 cut(s) 312
BstKTI GATC 3 cut(s) 175, 307, 316
BstMAI GTCTC 3 cut(s) 9, 557, 601
BstMBI GATC 3 cut(s) 172, 304, 313
BstNI CCWGG 1 cut(s) 498
BstNSI RCATGY 1 cut(s) 454
BstSCI CCNGG 3 cut(s) 260, 496, 640
BstUI CGCG 1 cut(s) 312
BstX2I RGATCY 1 cut(s) 172
BstYI RGATCY 1 cut(s) 172
BsuI GTATCC 1 cut(s) 608
BsuRI GGCC 2 cut(s) 60, 634
BtsCI GGATG 2 cut(s) 679, 778
BveI ACCTGC 1 cut(s) 221
Cac8I GCNNGC 1 cut(s) 441
Cfr10I RCCGGY 1 cut(s) 56
Cfr13I GGNCC 1 cut(s) 632
CseI GACGC 1 cut(s) 308
CspCI CAANNNNNGTGG 2 cut(s) 199, 234
CviAII CATG 2 cut(s) 400, 451
CviJI RGCY 8 cut(s) 60, 73, 88, 357, 420, 577, 634, 729
CviKI_1 RGCY 8 cut(s) 60, 73, 88, 357, 420, 577, 634, 729
DdeI CTNAG 4 cut(s) 169, 176, 524, 731
DpnI GATC 3 cut(s) 174, 306, 315
DpnII GATC 3 cut(s) 172, 304, 313
DraI TTTAAA 1 cut(s) 153
EaeI YGGCCR 1 cut(s) 58
Ecl136II GAGCTC 1 cut(s) 73
Eco24I GRGCYC 1 cut(s) 75
Eco31I GGTCTC 1 cut(s) 9
Eco32I GATATC 3 cut(s) 106, 242, 369
Eco53kI GAGCTC 1 cut(s) 73
Eco88I CYCGRG 1 cut(s) 68
EcoICRI GAGCTC 1 cut(s) 73
EcoRII CCWGG 1 cut(s) 496
EcoRV GATATC 3 cut(s) 106, 242, 369
EcoT38I GRGCYC 1 cut(s) 75
FaeI CATG 2 cut(s) 403, 454
FaiI YATR 7 cut(s) 63, 401, 408, 452, 710, 726, 749
FaqI GGGAC 2 cut(s) 466, 489
FatI CATG 2 cut(s) 399, 450
FokI GGATG 2 cut(s) 666, 785
FriOI GRGCYC 1 cut(s) 75
FspBI CTAG 2 cut(s) 611, 663
GsuI CTGGAG 1 cut(s) 54
HaeIII GGCC 2 cut(s) 60, 634
HapII CCGG 4 cut(s) 57, 261, 641, 683
HgaI GACGC 1 cut(s) 308
Hin1II CATG 2 cut(s) 403, 454
HinfI GANTC 2 cut(s) 686, 743
HpaII CCGG 4 cut(s) 57, 261, 641, 683
HphI GGTGA 1 cut(s) 788
Hpy188I TCNGA 1 cut(s) 304
Hpy188III TCNNGA 4 cut(s) 291, 323, 683, 740
HpyAV CCTTC 2 cut(s) 147, 368
HpyCH4III ACNGT 1 cut(s) 20
HpyCH4V TGCA 3 cut(s) 24, 439, 475
HpyF3I CTNAG 4 cut(s) 169, 176, 524, 731
Hsp92II CATG 2 cut(s) 403, 454
Kpn2I TCCGGA 1 cut(s) 682
Kzo9I GATC 3 cut(s) 172, 304, 313
LmnI GCTCC 2 cut(s) 78, 459
LpnPI CCDG 9 cut(s) 18, 70, 226, 274, 357, 483, 510, 654, 696
LweI GCATC 1 cut(s) 166
MaeI CTAG 2 cut(s) 611, 663
MaeIII GTNAC 2 cut(s) 329, 787
MalI GATC 3 cut(s) 174, 306, 315
MboI GATC 3 cut(s) 172, 304, 313
MboII GAAGA 2 cut(s) 668, 696
MfeI CAATTG 1 cut(s) 94
MflI RGATCY 1 cut(s) 172
MhlI GDGCHC 1 cut(s) 75
MluCI AATT 9 cut(s) 94, 163, 198, 204, 492, 531, 623, 694, 780
MmeI TCCRAC 2 cut(s) 366, 750
MnlI CCTC 8 cut(s) 5, 77, 260, 262, 291, 469, 605, 623
MroI TCCGGA 1 cut(s) 682
MroXI GAANNNNTTC 2 cut(s) 357, 695
MspCI CTTAAG 1 cut(s) 668
MspI CCGG 4 cut(s) 57, 261, 641, 683
MspR9I CCNGG 3 cut(s) 262, 498, 642
MunI CAATTG 1 cut(s) 94
MvaI CCWGG 1 cut(s) 498
MvnI CGCG 1 cut(s) 312
NciI CCSGG 2 cut(s) 262, 642
NdeII GATC 3 cut(s) 172, 304, 313
NlaIII CATG 2 cut(s) 403, 454
NmuCI GTSAC 1 cut(s) 787
NspI RCATGY 1 cut(s) 454
PaeR7I CTCGAG 1 cut(s) 68
PaqCI CACCTGC 1 cut(s) 221
PcsI WCGNNNNNNNCGW 1 cut(s) 316
PdmI GAANNNNTTC 2 cut(s) 357, 695
PfeI GAWTC 2 cut(s) 686, 743
PflMI CCANNNNNTGG 1 cut(s) 497
Psp124BI GAGCTC 1 cut(s) 75
Psp6I CCWGG 1 cut(s) 496
PspGI CCWGG 1 cut(s) 496
PspPI GGNCC 1 cut(s) 632
PspXI VCTCGAGB 1 cut(s) 68
PsuI RGATCY 1 cut(s) 172
SacI GAGCTC 1 cut(s) 75
Sau3AI GATC 3 cut(s) 172, 304, 313
Sau96I GGNCC 1 cut(s) 632
ScrFI CCNGG 3 cut(s) 262, 498, 642
SduI GDGCHC 1 cut(s) 75
SetI ASST 7 cut(s) 75, 215, 252, 351, 597, 675, 715
SfaNI GCATC 1 cut(s) 166
Sfr274I CTCGAG 1 cut(s) 68
SlaI CTCGAG 1 cut(s) 68
SmlI CTYRAG 2 cut(s) 68, 668
SmoI CTYRAG 2 cut(s) 68, 668
SpeI ACTAGT 1 cut(s) 662
Sse9I AATT 9 cut(s) 94, 163, 198, 204, 492, 531, 623, 694, 780
SsiI CCGC 2 cut(s) 6, 123
SspI AATATT 1 cut(s) 415
SspMI CTAG 2 cut(s) 611, 663
SstI GAGCTC 1 cut(s) 75
StyD4I CCNGG 3 cut(s) 260, 496, 640
TaaI ACNGT 1 cut(s) 20
TaqI TCGA 4 cut(s) 69, 267, 689, 784
TasI AATT 9 cut(s) 94, 163, 198, 204, 492, 531, 623, 694, 780
TfiI GAWTC 2 cut(s) 686, 743
TseFI GTSAC 1 cut(s) 787
Tsp45I GTSAC 1 cut(s) 787
TspDTI ATGAA 1 cut(s) 668
Van91I CCANNNNNTGG 1 cut(s) 497
Vha464I CTTAAG 1 cut(s) 668
XapI RAATTY 2 cut(s) 204, 780
XceI RCATGY 1 cut(s) 454
XhoI CTCGAG 1 cut(s) 68
XmnI GAANNNNTTC 2 cut(s) 357, 695
XspI CTAG 2 cut(s) 611, 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.