Prupe.3G055300_v2.0.a1

regulation of response to stimulus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000281
Physical Location & Seq
Reverse (-)
3899479 .. 3901913
2435 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G055300.1

Sequence Viewer

Length: 747 bp
ATGTACTTTGTGGTTTACGAGTTTGAGCTAATGCCTTCTACTCTTCGTAGTGCTACCAGTGTTAGTTTTGTCTTGTGTCTTACTGATATTTCAATTGTATTGCTTCAATTTATCGTTTTTAATGGATTAGTGCTTTTATCTTGGGTTGGTGAGGGAGATTGTTGCAATTGGACTGGAGTTGTCTGCGACAATTTAACAGGTCATGTCCGTGAGCTCCACCTTGGAAATTATTATTCAGATGAGTATCTGAATTACAGTTTGTATCAAGAAAACTCTTTGGGTGGCAAGGTGACAAACACACTCCCCTCTATGCTGGTAGAGTTGCATATGTCCGGTTGTGAACTCAATCAAATACCAGTTGGTGTTGCAAACACGACAAGGCTTAAAGTTGTTAATCTCAGGTGGAACATCATATGGGGTACCATACCTCAATGGTTGTACACTTGTAGCAATCTTGAGTCCCTATCCCTTTATTTGAATCTCTTGCGAGGTGAAATTTCAAGTTCCATTGGAAACTTGACAGCCATTGTCAATCTTGACTTGTCTGCTAATCAAATTGAAGAGAAAATGCCAAACTCATTGGGAAATCTTTGTCAAATGGAGTCACTGAAGCTGTCAACAAATGATTTTTCAGGTCCACTATCCTATCAGCTAGGAAATTTCAGACATTTCCGCCTCCTTGCACTTTCGAGTAATTCAATATCAGGTCCAATTCCAGTGTCCTTGGGAAATCTGTCATTCCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_6 LRR_8

Protein Analysis

249

Amino Acids

27.56

Weight (kDa)

4.88

Isoelectric Point (pI)

28.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 419
AccB1I GGYRCC 1 cut(s) 419
AciI CCGC 1 cut(s) 673
AcsI RAATTY 2 cut(s) 495, 658
AcuI CTGAAG 1 cut(s) 629
AfaI GTAC 3 cut(s) 5, 421, 440
AgsI TTSAA 6 cut(s) 93, 107, 478, 501, 560, 699
AluBI AGCT 4 cut(s) 28, 214, 613, 652
AluI AGCT 4 cut(s) 28, 214, 613, 652
Alw21I GWGCWC 1 cut(s) 216
ApoI RAATTY 2 cut(s) 495, 658
Asp718I GGTACC 1 cut(s) 419
AspS9I GGNCC 2 cut(s) 635, 707
AsuHPI GGTGA 3 cut(s) 161, 301, 503
AvaII GGWCC 2 cut(s) 635, 707
BanI GGYRCC 1 cut(s) 419
BanII GRGCYC 1 cut(s) 216
Bbv12I GWGCWC 1 cut(s) 216
BfaI CTAG 1 cut(s) 653
Bme18I GGWCC 2 cut(s) 635, 707
BmgT120I GGNCC 2 cut(s) 635, 707
BmiI GGNNCC 1 cut(s) 421
BpmI CTGGAG 1 cut(s) 195
BpuEI CTTGAG 1 cut(s) 476
BsaBI GATNNNNATC 1 cut(s) 243
BsaJI CCNNGG 2 cut(s) 220, 723
BsaWI WCCGGW 1 cut(s) 332
Bse1I ACTGG 4 cut(s) 57, 178, 356, 716
Bse8I GATNNNNATC 1 cut(s) 243
BseDI CCNNGG 2 cut(s) 220, 723
BseJI GATNNNNATC 1 cut(s) 243
BseMII CTCAG 1 cut(s) 412
BseNI ACTGG 4 cut(s) 57, 178, 356, 716
BshNI GGYRCC 1 cut(s) 419
BsiHKAI GWGCWC 1 cut(s) 216
BsiSI CCGG 1 cut(s) 333
BslFI GGGAC 1 cut(s) 445
BsmFI GGGAC 1 cut(s) 445
Bsp1286I GDGCHC 1 cut(s) 216
Bsp1407I TGTACA 1 cut(s) 438
BspACI CCGC 1 cut(s) 673
BspCNI CTCAG 1 cut(s) 411
BspLI GGNNCC 1 cut(s) 421
BspT107I GGYRCC 1 cut(s) 419
BsrGI TGTACA 1 cut(s) 438
BsrI ACTGG 4 cut(s) 57, 178, 356, 716
BssECI CCNNGG 2 cut(s) 220, 723
BssT1I CCWWGG 2 cut(s) 220, 723
Bst4CI ACNGT 1 cut(s) 257
Bst6I CTCTTC 2 cut(s) 48, 555
BstAUI TGTACA 1 cut(s) 438
BstDEI CTNAG 1 cut(s) 398
BtsIMutI CAGTG 3 cut(s) 64, 605, 723
Cfr13I GGNCC 2 cut(s) 635, 707
Csp6I GTAC 3 cut(s) 4, 420, 439
CviAII CATG 1 cut(s) 203
CviJI RGCY 6 cut(s) 28, 214, 382, 524, 613, 652
CviKI_1 RGCY 6 cut(s) 28, 214, 382, 524, 613, 652
CviQI GTAC 3 cut(s) 4, 420, 439
DdeI CTNAG 1 cut(s) 398
Eam1104I CTCTTC 2 cut(s) 48, 555
EarI CTCTTC 2 cut(s) 48, 555
EciI GGCGGA 1 cut(s) 662
Ecl136II GAGCTC 1 cut(s) 214
Eco130I CCWWGG 2 cut(s) 220, 723
Eco24I GRGCYC 1 cut(s) 216
Eco47I GGWCC 2 cut(s) 635, 707
Eco53kI GAGCTC 1 cut(s) 214
Eco57I CTGAAG 1 cut(s) 629
EcoICRI GAGCTC 1 cut(s) 214
EcoT14I CCWWGG 2 cut(s) 220, 723
EcoT38I GRGCYC 1 cut(s) 216
ErhI CCWWGG 2 cut(s) 220, 723
FaeI CATG 1 cut(s) 206
FaiI YATR 8 cut(s) 204, 311, 327, 329, 413, 415, 425, 745
FaqI GGGAC 1 cut(s) 445
FatI CATG 1 cut(s) 202
FauNDI CATATG 2 cut(s) 327, 413
FriOI GRGCYC 1 cut(s) 216
FspBI CTAG 1 cut(s) 653
GsuI CTGGAG 1 cut(s) 195
HapII CCGG 1 cut(s) 333
Hin1II CATG 1 cut(s) 206
HincII GTYRAC 1 cut(s) 618
HindII GTYRAC 1 cut(s) 618
HinfI GANTC 3 cut(s) 458, 478, 602
HpaII CCGG 1 cut(s) 333
HphI GGTGA 3 cut(s) 161, 301, 503
Hpy166II GTNNAC 5 cut(s) 16, 341, 441, 618, 638
Hpy188I TCNGA 3 cut(s) 238, 249, 665
Hpy188III TCNNGA 3 cut(s) 266, 455, 536
Hpy8I GTNNAC 5 cut(s) 16, 341, 441, 618, 638
HpyAV CCTTC 1 cut(s) 45
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4V TGCA 4 cut(s) 165, 325, 368, 683
HpyF3I CTNAG 1 cut(s) 398
Hsp92II CATG 1 cut(s) 206
KpnI GGTACC 1 cut(s) 423
LmnI GCTCC 1 cut(s) 219
MaeI CTAG 1 cut(s) 653
MaeIII GTNAC 2 cut(s) 289, 603
MboII GAAGA 2 cut(s) 35, 572
MfeI CAATTG 2 cut(s) 93, 166
MhlI GDGCHC 1 cut(s) 216
MlyI GAGTC 2 cut(s) 467, 611
MnlI CCTC 5 cut(s) 145, 316, 438, 482, 686
MseI TTAA 4 cut(s) 120, 194, 384, 393
MslI CAYNNNNRTG 1 cut(s) 207
MspI CCGG 1 cut(s) 333
MunI CAATTG 2 cut(s) 93, 166
NdeI CATATG 2 cut(s) 327, 413
NlaIII CATG 1 cut(s) 206
NlaIV GGNNCC 1 cut(s) 421
NmuCI GTSAC 2 cut(s) 289, 603
PfeI GAWTC 1 cut(s) 478
PleI GAGTC 2 cut(s) 466, 610
PpsI GAGTC 2 cut(s) 466, 610
Psp124BI GAGCTC 1 cut(s) 216
PspN4I GGNNCC 1 cut(s) 421
PspPI GGNCC 2 cut(s) 635, 707
RsaI GTAC 3 cut(s) 5, 421, 440
RsaNI GTAC 3 cut(s) 4, 420, 439
RseI CAYNNNNRTG 1 cut(s) 207
SacI GAGCTC 1 cut(s) 216
SaqAI TTAA 4 cut(s) 120, 194, 384, 393
Sau96I GGNCC 2 cut(s) 635, 707
SchI GAGTC 2 cut(s) 467, 611
SduI GDGCHC 1 cut(s) 216
SinI GGWCC 2 cut(s) 635, 707
SmiMI CAYNNNNRTG 1 cut(s) 207
SmlI CTYRAG 1 cut(s) 455
SmoI CTYRAG 1 cut(s) 455
SsiI CCGC 1 cut(s) 673
SspMI CTAG 1 cut(s) 653
SstI GAGCTC 1 cut(s) 216
StyI CCWWGG 2 cut(s) 220, 723
TaaI ACNGT 1 cut(s) 257
TaqI TCGA 1 cut(s) 689
TatI WGTACW 2 cut(s) 3, 438
TfiI GAWTC 1 cut(s) 478
Tru1I TTAA 4 cut(s) 120, 194, 384, 393
Tru9I TTAA 4 cut(s) 120, 194, 384, 393
TscAI CASTG 3 cut(s) 64, 612, 723
TseFI GTSAC 2 cut(s) 289, 603
Tsp45I GTSAC 2 cut(s) 289, 603
TspGWI ACGGA 1 cut(s) 197
TspRI CASTG 3 cut(s) 64, 612, 723
VpaK11BI GGWCC 2 cut(s) 635, 707
XapI RAATTY 2 cut(s) 495, 658
XspI CTAG 1 cut(s) 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.