MD01G1000900.v1.1

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Reverse (-)
225962 .. 226693
732 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1000900.v1.1.491

Sequence Viewer

Length: 684 bp
ATGGCCACTACCTTTTCAAGCGCCATCAGATTTACTCGTACCGGAGTTTTCAATATGGAGAATGCAATATTTGTGACCAAGGGTAGAGAAGTGAAATATGACGCAACGCTTGGGTTGATAGGTATTTCGGACCTTTCAAGCAACATGTTATCTAAAGAAATCCCTAACGAGCTAGCTAGCCTTGGTAGCATACAAACGTTGAATTTATCCAATAGTCTTCTGACCGAAAGAATCCCTTCCAAGATCGGTGATATGGGATCGTTAGAAATGCTTGATTTGTTTGTGAACCAACTTTTTGGCGAAATTTCTCCAAGTGCCTCGAATTTGACATTTCTCAATTATCTGAATTTGTCCTATAACAATCTAATCGGTTCGATTCTAAAAAGCGCTCAGCTTCAGAGCTTTGATCTACCCAGTTATGCTAGCAATAAATTGTGCAAAGGTTCTTTGGAAGAGTGTTGCAATATAAATGAGGCCATGCCACTGGTAGGCGATGAAAAGCATAGAGAAGGTCATTCACTTGAAGACGGTGGGTTCTATCTGAGCTTGGGGCTTGGATTTGCATTAGGGTTTTGGATTGTTCTTGGTTCATTGCTGTCTAATACGCCATGGAGCAATGCATTGTGTCTGTTCCAAAATCGCATTGTGAAGAAGCTCTATGCTATAATCGTTGAACATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

228

Amino Acids

24.94

Weight (kDa)

5.23

Isoelectric Point (pI)

36.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 197
AclWI GGATC 1 cut(s) 265
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 4 cut(s) 202, 303, 322, 346
AcuI CTGAAG 1 cut(s) 380
AfaI GTAC 1 cut(s) 40
AfeI AGCGCT 1 cut(s) 388
AfiI CCNNNNNNNGG 1 cut(s) 488
AflIII ACRYGT 1 cut(s) 144
AgsI TTSAA 6 cut(s) 18, 52, 138, 202, 524, 674
AluBI AGCT 6 cut(s) 172, 176, 394, 402, 546, 655
AluI AGCT 6 cut(s) 172, 176, 394, 402, 546, 655
AlwI GGATC 1 cut(s) 265
Aor51HI AGCGCT 1 cut(s) 388
AoxI GGCC 2 cut(s) 3, 474
ApoI RAATTY 4 cut(s) 202, 303, 322, 346
Asp700I GAANNNNTTC 1 cut(s) 235
AspLEI GCGC 2 cut(s) 23, 389
AspS9I GGNCC 1 cut(s) 130
AsuHPI GGTGA 1 cut(s) 260
AsuNHI GCTAGC 3 cut(s) 172, 176, 422
AvaII GGWCC 1 cut(s) 130
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 2 cut(s) 209, 531
BccI CCATC 1 cut(s) 32
BfaI CTAG 3 cut(s) 173, 177, 423
BfoI RGCGCY 2 cut(s) 24, 390
BlpI GCTNAGC 1 cut(s) 390
Bme18I GGWCC 1 cut(s) 130
BmgT120I GGNCC 1 cut(s) 130
BmrI ACTGGG 1 cut(s) 408
BmtI GCTAGC 3 cut(s) 176, 180, 426
BmuI ACTGGG 1 cut(s) 408
BpiI GAAGAC 2 cut(s) 209, 531
Bpu1102I GCTNAGC 1 cut(s) 390
BsaJI CCNNGG 3 cut(s) 78, 181, 608
BsaWI WCCGGW 1 cut(s) 41
Bsc4I CCNNNNNNNGG 1 cut(s) 488
Bse1I ACTGG 2 cut(s) 414, 489
Bse3DI GCAATG 2 cut(s) 590, 622
BseDI CCNNGG 3 cut(s) 78, 181, 608
BseLI CCNNNNNNNGG 1 cut(s) 488
BseMI GCAATG 2 cut(s) 590, 622
BseMII CTCAG 2 cut(s) 404, 533
BseNI ACTGG 2 cut(s) 414, 489
BshFI GGCC 2 cut(s) 5, 476
BsiSI CCGG 1 cut(s) 42
BslI CCNNNNNNNGG 1 cut(s) 488
BsmI GAATGC 1 cut(s) 67
BsnI GGCC 2 cut(s) 5, 476
Bsp143I GATC 3 cut(s) 243, 257, 406
Bsp1720I GCTNAGC 1 cut(s) 390
Bsp19I CCATGG 1 cut(s) 608
BspANI GGCC 2 cut(s) 5, 476
BspCNI CTCAG 2 cut(s) 403, 534
BspOI GCTAGC 3 cut(s) 176, 180, 426
BspPI GGATC 1 cut(s) 265
BsrDI GCAATG 2 cut(s) 590, 622
BsrI ACTGG 2 cut(s) 414, 489
BssECI CCNNGG 3 cut(s) 78, 181, 608
BssMI GATC 3 cut(s) 243, 257, 406
BssT1I CCWWGG 3 cut(s) 78, 181, 608
Bst4CI ACNGT 1 cut(s) 530
Bst6I CTCTTC 1 cut(s) 447
BstC8I GCNNGC 3 cut(s) 174, 178, 424
BstDEI CTNAG 2 cut(s) 390, 542
BstDSI CCRYGG 1 cut(s) 608
BstH2I RGCGCY 2 cut(s) 24, 390
BstHHI GCGC 2 cut(s) 23, 389
BstKTI GATC 3 cut(s) 246, 260, 409
BstMBI GATC 3 cut(s) 243, 257, 406
BstMWI GCNNNNNNNGC 1 cut(s) 186
BstNSI RCATGY 1 cut(s) 148
BstV2I GAAGAC 2 cut(s) 209, 531
BstXI CCANNNNNNTGG 2 cut(s) 296, 484
BsuRI GGCC 2 cut(s) 5, 476
BtgI CCRYGG 1 cut(s) 608
BtgZI GCGATG 1 cut(s) 507
BtsIMutI CAGTG 1 cut(s) 482
Cac8I GCNNGC 3 cut(s) 174, 178, 424
CfoI GCGC 2 cut(s) 23, 389
Cfr13I GGNCC 1 cut(s) 130
CseI GACGC 1 cut(s) 110
Csp6I GTAC 1 cut(s) 39
CviAII CATG 3 cut(s) 145, 478, 609
CviQI GTAC 1 cut(s) 39
DdeI CTNAG 2 cut(s) 390, 542
DpnI GATC 3 cut(s) 245, 259, 408
DpnII GATC 3 cut(s) 243, 257, 406
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 447
EarI CTCTTC 1 cut(s) 447
Eco130I CCWWGG 3 cut(s) 78, 181, 608
Eco47I GGWCC 1 cut(s) 130
Eco47III AGCGCT 1 cut(s) 388
Eco57I CTGAAG 1 cut(s) 380
EcoT14I CCWWGG 3 cut(s) 78, 181, 608
EcoT22I ATGCAT 1 cut(s) 622
ErhI CCWWGG 3 cut(s) 78, 181, 608
FaeI CATG 3 cut(s) 148, 481, 612
FalI AAGNNNNNCTT 2 cut(s) 220, 252
FatI CATG 3 cut(s) 144, 477, 608
FspBI CTAG 3 cut(s) 173, 177, 423
GlaI GCGC 2 cut(s) 22, 388
HaeII RGCGCY 2 cut(s) 24, 390
HaeIII GGCC 2 cut(s) 5, 476
HapII CCGG 1 cut(s) 42
HgaI GACGC 1 cut(s) 110
HhaI GCGC 2 cut(s) 23, 389
Hin1II CATG 3 cut(s) 148, 481, 612
Hin6I GCGC 2 cut(s) 21, 387
HinP1I GCGC 2 cut(s) 21, 387
HinfI GANTC 2 cut(s) 231, 376
HpaII CCGG 1 cut(s) 42
HphI GGTGA 1 cut(s) 260
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 6 cut(s) 29, 130, 222, 345, 399, 543
Hpy8I GTNNAC 1 cut(s) 286
HpyAV CCTTC 2 cut(s) 246, 503
HpyCH4III ACNGT 1 cut(s) 530
HpyCH4IV ACGT 1 cut(s) 197
HpyCH4V TGCA 5 cut(s) 65, 438, 462, 563, 620
HpyF10VI GCNNNNNNNGC 1 cut(s) 186
HpyF3I CTNAG 2 cut(s) 390, 542
HpySE526I ACGT 1 cut(s) 197
Hsp92II CATG 3 cut(s) 148, 481, 612
HspAI GCGC 2 cut(s) 21, 387
Kzo9I GATC 3 cut(s) 243, 257, 406
LmnI GCTCC 1 cut(s) 612
LpnPI CCDG 3 cut(s) 55, 427, 470
MaeI CTAG 3 cut(s) 173, 177, 423
MaeII ACGT 1 cut(s) 197
MaeIII GTNAC 1 cut(s) 73
MalI GATC 3 cut(s) 245, 259, 408
MboI GATC 3 cut(s) 243, 257, 406
MboII GAAGA 4 cut(s) 209, 464, 536, 661
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 6 cut(s) 202, 303, 322, 337, 346, 431
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 2 cut(s) 328, 466
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 622
MroXI GAANNNNTTC 1 cut(s) 235
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 682
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 42
Mva1269I GAATGC 1 cut(s) 67
MwoI GCNNNNNNNGC 1 cut(s) 186
NcoI CCATGG 1 cut(s) 608
NdeII GATC 3 cut(s) 243, 257, 406
NheI GCTAGC 3 cut(s) 172, 176, 422
NlaIII CATG 3 cut(s) 148, 481, 612
NmuCI GTSAC 1 cut(s) 73
NsiI ATGCAT 1 cut(s) 622
NspI RCATGY 1 cut(s) 148
PciI ACATGT 1 cut(s) 144
PctI GAATGC 1 cut(s) 67
PdmI GAANNNNTTC 1 cut(s) 235
PfeI GAWTC 2 cut(s) 231, 376
PscI ACATGT 1 cut(s) 144
Psp1406I AACGTT 1 cut(s) 197
PspPI GGNCC 1 cut(s) 130
RsaI GTAC 1 cut(s) 40
RsaNI GTAC 1 cut(s) 39
SaqAI TTAA 1 cut(s) 682
Sau3AI GATC 3 cut(s) 243, 257, 406
Sau96I GGNCC 1 cut(s) 130
SinI GGWCC 1 cut(s) 130
Sse9I AATT 6 cut(s) 202, 303, 322, 337, 346, 431
SspI AATATT 1 cut(s) 69
SspMI CTAG 3 cut(s) 173, 177, 423
StyI CCWWGG 3 cut(s) 78, 181, 608
TaaI ACNGT 1 cut(s) 530
TaiI ACGT 1 cut(s) 200
TaqI TCGA 2 cut(s) 320, 374
TaqII GACCGA 1 cut(s) 239
TasI AATT 6 cut(s) 202, 303, 322, 337, 346, 431
TfiI GAWTC 2 cut(s) 231, 376
Tru1I TTAA 1 cut(s) 682
Tru9I TTAA 1 cut(s) 682
TscAI CASTG 1 cut(s) 489
TseFI GTSAC 1 cut(s) 73
Tsp45I GTSAC 1 cut(s) 73
TspDTI ATGAA 2 cut(s) 510, 579
TspRI CASTG 1 cut(s) 489
VpaK11BI GGWCC 1 cut(s) 130
XapI RAATTY 4 cut(s) 202, 303, 322, 346
XceI RCATGY 1 cut(s) 148
XmnI GAANNNNTTC 1 cut(s) 235
XspI CTAG 3 cut(s) 173, 177, 423
Zsp2I ATGCAT 1 cut(s) 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.