MD08G1239000.v1.1

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0000281
Physical Location & Seq
Reverse (-)
30581187 .. 30582143
957 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1239000.v1.1.491

Sequence Viewer

Length: 957 bp
ATGACTTGCATGGTCCAATTTCAACGTGTGAAAGCCATCGTCAATCTTGACTTGAGTCATAATCAACTTGGAGGGAAAATCCCAAATTCATTTGAAAATCTCTGTAAGTTGATGTTTCTTGATCTGTCGTGGAACCATGTTAGTGGAAGGGCGTCAGAAATCTTCAAAAGTCTATCTCGGTGTACTACTTCAAGTCAACTAGAGTCCATCAGCTTATCTTATAATGATCTTTCCGGTCAGTTAACAGATGAGCTCGGAAATTTTCAAAATCTAAGCTACCTTAATCTTTCCAGTAATTCAATATCTGGTCCCATTCCAAAGTCGATACAAAATCTGTCACTCTTGAAAATATTAGACATTTCTAATAATTCAATGAAGGGTGATGTCACTGAAGTTCATTTTACTAATCTTTCACGATTGCAGGAGCTTTTTGCAAATGGAAATTCATTGACTCTCAAAACCAGTAGAGAGTGGCTTCCTCCTTTTCGACTTCATGTGTTGTTCTTAGATTCTTGGAATCTGGGGCCAGAGTTGCCTAGTTGGATTCGGAGTCAAAAGTACTTGGAACAGCTAAGCATATCAAATACAGGAATTTCTGGTACCATTCCGATATGGTTTTGGAATTTTTCTTATCTGGGATTAAGTTTGGTGGATCTCTCTGGCAATCAATTGTATGGTCAGGTTCCAAGAATAGTTACTGCTCCTTCAGCTGTAATCGACTTAAGTTCCAACAAGTTCACTGGTTCTTTACCTCTTGTATCGTCTACAGTAGCTGTGCTCGATCTTTCCAATTCATCTTTTTCAGGGTCCCTCTTTCACTTCTTTTGTGACAGGATGGATGAATCAAAGCAAATGACAAACCTTTATCTTCGCAACAATCATCTCACAGGAGAACTTCCTGAATGTTGGATGAATTGGAAAAACTTGATCGTCATCAATTTAGATGACAACCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

319

Amino Acids

35.74

Weight (kDa)

5.96

Isoelectric Point (pI)

28.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 16 - 193 1.9e-08 Leucine-rich repeat region
LRR_8 PF13855 90 - 150 6.9e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 222
Acc65I GGTACC 1 cut(s) 599
AccB1I GGYRCC 1 cut(s) 599
AccI GTMKAC 1 cut(s) 764
AclWI GGATC 1 cut(s) 660
AcsI RAATTY 5 cut(s) 85, 259, 442, 591, 622
AcuI CTGAAG 2 cut(s) 411, 690
AcyI GRCGYC 1 cut(s) 152
AfaI GTAC 3 cut(s) 184, 560, 601
AflII CTTAAG 1 cut(s) 721
AflIII ACRYGT 1 cut(s) 25
AgsI TTSAA 8 cut(s) 23, 95, 166, 192, 266, 300, 346, 372
AluBI AGCT 7 cut(s) 213, 253, 276, 427, 571, 710, 773
AluI AGCT 7 cut(s) 213, 253, 276, 427, 571, 710, 773
Alw21I GWGCWC 2 cut(s) 255, 780
AlwI GGATC 1 cut(s) 660
AlwNI CAGNNNCTG 1 cut(s) 773
AoxI GGCC 1 cut(s) 524
ApoI RAATTY 5 cut(s) 85, 259, 442, 591, 622
Asp718I GGTACC 1 cut(s) 599
AspS9I GGNCC 4 cut(s) 13, 308, 524, 807
AsuHPI GGTGA 1 cut(s) 392
AvaII GGWCC 3 cut(s) 13, 308, 807
BanI GGYRCC 1 cut(s) 599
BanII GRGCYC 1 cut(s) 255
Bbv12I GWGCWC 2 cut(s) 255, 780
BccI CCATC 3 cut(s) 44, 215, 829
BfaI CTAG 2 cut(s) 200, 537
BfmI CTRYAG 1 cut(s) 765
BfrI CTTAAG 1 cut(s) 721
BlpI GCTNAGC 1 cut(s) 572
BmcAI AGTACT 1 cut(s) 560
Bme18I GGWCC 3 cut(s) 13, 308, 807
BmgT120I GGNCC 4 cut(s) 13, 308, 524, 807
BmiI GGNNCC 7 cut(s) 134, 310, 525, 601, 684, 808, 809
BoxI GACNNNNGTC 1 cut(s) 54
Bpu1102I GCTNAGC 1 cut(s) 572
BpuEI CTTGAG 1 cut(s) 73
BsaBI GATNNNNATC 1 cut(s) 932
BsaHI GRCGYC 1 cut(s) 152
BsaWI WCCGGW 1 cut(s) 233
Bse1I ACTGG 3 cut(s) 291, 462, 745
Bse8I GATNNNNATC 1 cut(s) 932
BseGI GGATG 3 cut(s) 840, 844, 915
BseJI GATNNNNATC 1 cut(s) 932
BseNI ACTGG 3 cut(s) 291, 462, 745
BshFI GGCC 1 cut(s) 526
BshNI GGYRCC 1 cut(s) 599
BsiHKAI GWGCWC 2 cut(s) 255, 780
BsiSI CCGG 1 cut(s) 234
BslFI GGGAC 2 cut(s) 294, 793
BsmFI GGGAC 2 cut(s) 294, 793
BsnI GGCC 1 cut(s) 526
Bsp1286I GDGCHC 2 cut(s) 255, 780
Bsp143I GATC 5 cut(s) 121, 226, 652, 781, 927
Bsp1720I GCTNAGC 1 cut(s) 572
BspANI GGCC 1 cut(s) 526
BspLI GGNNCC 7 cut(s) 134, 310, 525, 601, 684, 808, 809
BspPI GGATC 1 cut(s) 660
BspT107I GGYRCC 1 cut(s) 599
BspTI CTTAAG 1 cut(s) 721
BsrI ACTGG 3 cut(s) 291, 462, 745
BssMI GATC 5 cut(s) 121, 226, 652, 781, 927
BssNI GRCGYC 1 cut(s) 152
Bst4CI ACNGT 1 cut(s) 769
BstACI GRCGYC 1 cut(s) 152
BstAFI CTTAAG 1 cut(s) 721
BstDEI CTNAG 3 cut(s) 272, 505, 572
BstF5I GGATG 3 cut(s) 840, 844, 915
BstKTI GATC 5 cut(s) 124, 229, 655, 784, 930
BstMBI GATC 5 cut(s) 121, 226, 652, 781, 927
BstMWI GCNNNNNNNGC 2 cut(s) 532, 707
BstPAI GACNNNNGTC 1 cut(s) 54
BstSFI CTRYAG 1 cut(s) 765
BstX2I RGATCY 1 cut(s) 652
BstXI CCANNNNNNTGG 1 cut(s) 143
BstYI RGATCY 1 cut(s) 652
BsuRI GGCC 1 cut(s) 526
BtsCI GGATG 3 cut(s) 840, 844, 915
BtsIMutI CAGTG 2 cut(s) 387, 738
CaiI CAGNNNCTG 1 cut(s) 773
Cfr13I GGNCC 4 cut(s) 13, 308, 524, 807
CseI GACGC 1 cut(s) 141
Csp6I GTAC 3 cut(s) 183, 559, 600
CviAII CATG 3 cut(s) 10, 137, 494
CviQI GTAC 3 cut(s) 183, 559, 600
DdeI CTNAG 3 cut(s) 272, 505, 572
DpnI GATC 5 cut(s) 123, 228, 654, 783, 929
DpnII GATC 5 cut(s) 121, 226, 652, 781, 927
Ecl136II GAGCTC 1 cut(s) 253
Eco24I GRGCYC 1 cut(s) 255
Eco47I GGWCC 3 cut(s) 13, 308, 807
Eco53kI GAGCTC 1 cut(s) 253
Eco57I CTGAAG 2 cut(s) 411, 690
EcoICRI GAGCTC 1 cut(s) 253
EcoO109I RGGNCCY 1 cut(s) 807
EcoT38I GRGCYC 1 cut(s) 255
FaeI CATG 3 cut(s) 13, 140, 497
FaiI YATR 8 cut(s) 11, 60, 138, 222, 495, 578, 613, 675
FaqI GGGAC 2 cut(s) 294, 793
FatI CATG 3 cut(s) 9, 136, 493
FblI GTMKAC 1 cut(s) 764
FokI GGATG 3 cut(s) 847, 851, 922
FriOI GRGCYC 1 cut(s) 255
FspBI CTAG 2 cut(s) 200, 537
HaeIII GGCC 1 cut(s) 526
HapII CCGG 1 cut(s) 234
HgaI GACGC 1 cut(s) 141
Hin1I GRCGYC 1 cut(s) 152
Hin1II CATG 3 cut(s) 13, 140, 497
HincII GTYRAC 2 cut(s) 197, 243
HindII GTYRAC 2 cut(s) 197, 243
HinfI GANTC 8 cut(s) 55, 203, 451, 509, 517, 544, 550, 842
HpaI GTTAAC 1 cut(s) 243
HpaII CCGG 1 cut(s) 234
HphI GGTGA 1 cut(s) 392
Hpy166II GTNNAC 5 cut(s) 183, 197, 243, 738, 765
Hpy188I TCNGA 4 cut(s) 157, 257, 549, 609
Hpy188III TCNNGA 5 cut(s) 47, 119, 343, 414, 899
Hpy8I GTNNAC 5 cut(s) 183, 197, 243, 738, 765
HpyAV CCTTC 3 cut(s) 141, 370, 714
HpyCH4III ACNGT 1 cut(s) 769
HpyCH4IV ACGT 1 cut(s) 25
HpyCH4V TGCA 3 cut(s) 9, 421, 434
HpyF10VI GCNNNNNNNGC 2 cut(s) 532, 707
HpyF3I CTNAG 3 cut(s) 272, 505, 572
HpySE526I ACGT 1 cut(s) 25
Hsp92I GRCGYC 1 cut(s) 152
Hsp92II CATG 3 cut(s) 13, 140, 497
KflI GGGWCCC 1 cut(s) 807
KpnI GGTACC 1 cut(s) 603
KspAI GTTAAC 1 cut(s) 243
Kzo9I GATC 5 cut(s) 121, 226, 652, 781, 927
LmnI GCTCC 2 cut(s) 424, 706
MaeI CTAG 2 cut(s) 200, 537
MaeII ACGT 1 cut(s) 25
MaeIII GTNAC 4 cut(s) 336, 385, 694, 827
MalI GATC 5 cut(s) 123, 228, 654, 783, 929
MboI GATC 5 cut(s) 121, 226, 652, 781, 927
MboII GAAGA 2 cut(s) 154, 860
MfeI CAATTG 1 cut(s) 668
MflI RGATCY 1 cut(s) 652
MhlI GDGCHC 2 cut(s) 255, 780
MlyI GAGTC 4 cut(s) 64, 212, 445, 559
MmeI TCCRAC 3 cut(s) 521, 753, 887
MnlI CCTC 4 cut(s) 65, 489, 762, 821
MseI TTAA 4 cut(s) 242, 282, 641, 722
MslI CAYNNNNRTG 1 cut(s) 141
MspA1I CMGCKG 1 cut(s) 710
MspCI CTTAAG 1 cut(s) 721
MspI CCGG 1 cut(s) 234
MunI CAATTG 1 cut(s) 668
MwoI GCNNNNNNNGC 2 cut(s) 532, 707
NdeII GATC 5 cut(s) 121, 226, 652, 781, 927
NlaIII CATG 3 cut(s) 13, 140, 497
NlaIV GGNNCC 7 cut(s) 134, 310, 525, 601, 684, 808, 809
NmuCI GTSAC 3 cut(s) 336, 385, 827
PfeI GAWTC 4 cut(s) 509, 517, 544, 842
PleI GAGTC 4 cut(s) 63, 211, 445, 558
PpsI GAGTC 4 cut(s) 63, 211, 445, 558
PpuMI RGGWCCY 1 cut(s) 807
PshAI GACNNNNGTC 1 cut(s) 54
PsiI TTATAA 1 cut(s) 222
Psp124BI GAGCTC 1 cut(s) 255
Psp5II RGGWCCY 1 cut(s) 807
PspN4I GGNNCC 7 cut(s) 134, 310, 525, 601, 684, 808, 809
PspPI GGNCC 4 cut(s) 13, 308, 524, 807
PspPPI RGGWCCY 1 cut(s) 807
PstNI CAGNNNCTG 1 cut(s) 773
PsuI RGATCY 1 cut(s) 652
PvuII CAGCTG 1 cut(s) 710
RsaI GTAC 3 cut(s) 184, 560, 601
RsaNI GTAC 3 cut(s) 183, 559, 600
RseI CAYNNNNRTG 1 cut(s) 141
SacI GAGCTC 1 cut(s) 255
SaqAI TTAA 4 cut(s) 242, 282, 641, 722
Sau3AI GATC 5 cut(s) 121, 226, 652, 781, 927
Sau96I GGNCC 4 cut(s) 13, 308, 524, 807
ScaI AGTACT 1 cut(s) 560
SchI GAGTC 4 cut(s) 64, 212, 445, 559
SduI GDGCHC 2 cut(s) 255, 780
SfcI CTRYAG 1 cut(s) 765
SinI GGWCC 3 cut(s) 13, 308, 807
SmiMI CAYNNNNRTG 1 cut(s) 141
SmlI CTYRAG 2 cut(s) 52, 721
SmoI CTYRAG 2 cut(s) 52, 721
SspI AATATT 1 cut(s) 351
SspMI CTAG 2 cut(s) 200, 537
SstI GAGCTC 1 cut(s) 255
TaaI ACNGT 1 cut(s) 769
TaiI ACGT 1 cut(s) 28
TaqI TCGA 4 cut(s) 323, 487, 717, 780
TatI WGTACW 2 cut(s) 182, 558
TfiI GAWTC 4 cut(s) 509, 517, 544, 842
Tru1I TTAA 4 cut(s) 242, 282, 641, 722
Tru9I TTAA 4 cut(s) 242, 282, 641, 722
TscAI CASTG 2 cut(s) 394, 745
TseFI GTSAC 3 cut(s) 336, 385, 827
Tsp45I GTSAC 3 cut(s) 336, 385, 827
TspDTI ATGAA 8 cut(s) 78, 386, 389, 435, 482, 783, 855, 926
TspRI CASTG 2 cut(s) 394, 745
Vha464I CTTAAG 1 cut(s) 721
VpaK11BI GGWCC 3 cut(s) 13, 308, 807
XapI RAATTY 5 cut(s) 85, 259, 442, 591, 622
XmiI GTMKAC 1 cut(s) 764
XspI CTAG 2 cut(s) 200, 537
ZrmI AGTACT 1 cut(s) 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.