MD01G1179300.v1.1

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Forward (+)
27907148 .. 27910040
2893 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1179300.v1.1.491

Sequence Viewer

Length: 2808 bp
ATGGAGAGAACCATGAGAGTTGTTTTATTGCTAATCAGGTTTCTAGCCATTGCAACCATTACTTTCAGTATTGGTTTATGCAATGGAAATCCCGGTTGGCCTCCACTTTGCAAAGAAAGTGAAAGACAAGCACTTCTGATGTTCAAGCAAGATCTCAAGGACCCTACCAATCGGCTTGCATCGTGGGTTGCAGAAGAACATTCAGACTGTTGCAGTTGGACAGGAGTTGTCTATGATCACATAACCGGCCACGTCCACAAGTTGCACCTTAATAGTTCTTATCACTCTTTTTGGGATTCCAACTCTTTCTTCGGTGGTAAGATAAATCCTTCTTTGCTCAGTTTAAAGCATCTCAACCACTTGGACTTGAGTAACAATAATTTCAGTACAACACAAATTCCTAGTTTCTTTGGTTCTATGACAAGTTTAACACACCTTAACCTTGCAAACTCAGAGTTTTATGGAATAATTCCTCATAAACTGGGAAATCTTTCCAGCCTACGTTATCTCAATCTCAGTAACATCTATAGTTCCAATCTGATGGTAGAGAACCTTCAGTGGATTTCTGGTCTTTCTCTGCTGAAACACTTGGACTTGAGTTCTGTAAATCTTAATATAGCATTTGACTGGTTGCAAGTTACAAACATGCTCCCTTCTTTGGTAGAGTTAATTATGTCCGATTGTCAACTTGTTCAAATTCCCCATCTACCCACCCCAAATTTTACTTCCCTGGTCGTCCTTGATCTCTCTTTCAACAATTTTAATTCTTTGATGCCGAAGTGGGTTTTCAGTCTTAAAAATCTAGTTTCTCTTCATCTCAATGATTGTGGTTTCCAAGGTCCAATTCCTAGCATTTCACAGAATATGACTTGTCTTAAATTTCTTAGTCTCTTGGAGAACGACTTCAATTCTACCATACCTGAATGGTTGTATAGCTTGAACAATCTTGAGTCCTTACTTCTTTCTTACAATGGCTTACATGGTGAAATATCGAGTTCCATTGGAAACATGACATCCCTTGTCAATCTAGACTTAAAGTATAATCAGTTGGAAGGGAAAATACCAAATTCTTTGGGACATCTTTGTAAGTTGAAAGTTCTTGATCTGTCAAAGAACCATTTCACTGTTCAAAGACCATCCGAAATCTTTGAAAGTTTGTCCAGATGTGGTCCAGATGGAATAAAGTCATTGTCGTTGAGAAATACTAATATATCAGGTCCCATTCCAATGTCACTAGGAAATATGTCAAACTTAGAAAAATTGGATATATCTTATAATTCGTTAGAAGGTGCAGTGTCGGAAGTTTCTTTTAGCAAACTTACAAAGTTGAAGCATTTCATTGCAAAAGGAAACTCATTGACTTTGAAAACTAGTCAAGATTGGGTTCCTCCTTTTCAACTTGAAATTTTGCAGCTGGATTCCTGGCATTTGGGGCCTAAATGGCCAATGTGGTTGCGGACACAAACACAATTAAAAGAACTGAGCTTGTTTGGTACAGGAATTTCAAGTACTATTCCAACTTGGTTTTGGAACTTAACTTCCAAAGTACAGTATCTGAATCTCTCTCACAATCAATTGTATGGGGAGATTCAAACTATAGTTGTTGCTCCTTATTCATTTGTTGATCTTGGTTCTAACCAATTCATTGGTGCATTGCCTATTGTTCCCACCTCATTATTGTGGCTAGATCTTTCCAATTCATCATTTTCTGGATCTGTTTTCCACTTCTTCTGTGATAGGCCAGATGAACCACGGCTACTTTATTTTCTTCTTCTCGGGAACAATCTTCTTACTGGAAATGTACCCGACTGTTGGGTGAATTGGTCATTTTTGGAATTCCTAAATTTAGAAAACAACCACCTAACTGGGAATGTCCCAATGTCCATGGGATACTTGCCACATTTGCAATCGCTGCACTTGCGCAATAATCACCTGTACGGAGAATTGCCACATTCCCTACAGAACTGTACCGGGTTGGAAGTTGTTGACCTTAGTGGAAATGGGTTTGTCGGAAGCATACCAATATGGATGGGTAAAAGCCTTCTTGGGTTGAACCTTCTTAACCTTCGTTCGAATGAGTTTGAAGGAGACATTCCTTCGGAAATTTGTTATTTGAAAAGTCTCCAGATATTGGACCTTGCGCATAATAAACTCTCTGGAACGATACCGAGATGCTTCCACAATTTGAGCGCCATGGCTGATGTGTCAGAATTCTTTTTGCAAACATCTCGGTTTATTATTTCTGATATGGCTCATACAGTTCTAGAGAATGCAATCTTGATCCCTGAAGAACTTACCGGCCTCCTCGCATTGCAGTCACTCAATTTATCGAATAATCGCTTCACTGGAAAAATTCCTTCAAAGATTGGTAATATGGCACGGTTAGAATCTCTCGATTTTTCCATGAACCAACTTGATGGTGAAATTCCTCCAAGCACTACGAATTTGACATTTTTGAATCACTTAAACTTGTCCTACAACAATTTGACGGGAAGAATTCCGGAAGGCACTCAGTTGCAGACCCTTGATCCGTCTAGCTTCATCGGCAATGAACTCTGCGGACCTCTACTCAACAACAATTGCAGCGCAAATGGAGTGATACCGCCACCAACAGTTGAGCAAGATGGAGGAGGATACCATTTACTTGAAGATGAGTGGTTCTACGTGAGCTTGGGAGTTGGATTCTTCACGGGGTTTTGGATTGTGCTTGGTTCTTTGCTGGTAAACATGCCATGGAGCATTCTTCTTTCACAGTTGCTGAATAGGATAGTGCTTAAAATGTGTCATGTAATTGTTGAATATGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

936

Amino Acids

104.7

Weight (kDa)

5.75

Isoelectric Point (pI)

29.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 40 - 76 5e-12 Leucine rich repeat N-terminal domain
LRR_14 PF23598 114 - 273 1.9e-09 Leucine-rich repeat region
LRR_8 PF13855 117 - 174 7.8e-07 Leucine rich repeat
LRR_14 PF23598 328 - 495 3.7e-09 Leucine-rich repeat region
LRR_8 PF13855 394 - 453 5.6e-07 Leucine rich repeat
LRR_8 PF13855 658 - 718 6.1e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1275
Acc16I TGCGCA 2 cut(s) 1922, 2142
AccB7I CCANNNNNTGG 1 cut(s) 2131
AccIII TCCGGA 1 cut(s) 2500
AciI CCGC 3 cut(s) 1456, 2559, 2603
AclWI GGATC 3 cut(s) 1720, 2275, 2522
AcoI YGGCCR 2 cut(s) 247, 1442
AcuI CTGAAG 2 cut(s) 539, 2307
AfaI GTAC 7 cut(s) 388, 1495, 1510, 1548, 1803, 1937, 1969
AfiI CCNNNNNNNGG 3 cut(s) 658, 1812, 2131
AhlI ACTAGT 1 cut(s) 1370
AjiI CACGTC 1 cut(s) 253
AjnI CCWGG 2 cut(s) 729, 1421
AjuI GAANNNNNNNTTGG 8 cut(s) 79, 111, 293, 325, 709, 741, 828, 860
AloI GAACNNNNNNTCC 2 cut(s) 1523, 1555
AluBI AGCT 5 cut(s) 936, 1414, 1485, 2538, 2670
AluI AGCT 5 cut(s) 936, 1414, 1485, 2538, 2670
Alw26I GTCTC 3 cut(s) 893, 2082, 2126
AlwI GGATC 3 cut(s) 1720, 2275, 2522
AlwNI CAGNNNCTG 2 cut(s) 1555, 2758
Ama87I CYCGRG 1 cut(s) 1775
Aor13HI TCCGGA 1 cut(s) 2500
AoxI GGCC 6 cut(s) 98, 247, 1433, 1442, 1739, 2299
ApeKI GCWGC 3 cut(s) 1411, 1912, 2583
Asp700I GAANNNNTTC 4 cut(s) 490, 902, 1118, 1334
AspLEI GCGC 4 cut(s) 1923, 2143, 2192, 2588
AspS9I GGNCC 7 cut(s) 160, 839, 1169, 1217, 1433, 2134, 2561
AsuC2I CCSGG 2 cut(s) 93, 1972
AsuHPI GGTGA 4 cut(s) 995, 1828, 1922, 2432
AsuII TTCGAA 1 cut(s) 2072
AvaI CYCGRG 1 cut(s) 1775
AvaII GGWCC 6 cut(s) 160, 839, 1169, 1217, 2134, 2561
BalI TGGCCA 1 cut(s) 1444
BarI GAAGNNNNNNTAC 4 cut(s) 537, 569, 1044, 1076
BbvI GCAGC 3 cut(s) 1423, 1899, 2595
BccI CCATC 7 cut(s) 535, 711, 1144, 1169, 2023, 2411, 2618
BceAI ACGGC 1 cut(s) 1769
BcgI CGANNNNNNTGC 2 cut(s) 2210, 2244
BciT130I CCWGG 2 cut(s) 731, 1423
BciVI GTATCC 2 cut(s) 1883, 2627
BclI TGATCA 1 cut(s) 235
BcnI CCSGG 2 cut(s) 93, 1972
BcoDI GTCTC 3 cut(s) 893, 2082, 2126
BcuI ACTAGT 1 cut(s) 1370
BfmI CTRYAG 3 cut(s) 526, 1596, 1958
BfoI RGCGCY 1 cut(s) 2193
BfuI GTATCC 2 cut(s) 1883, 2627
BglI GCCNNNNNGGC 1 cut(s) 1441
BglII AGATCT 2 cut(s) 151, 1687
BisI GCNGC 3 cut(s) 1412, 1913, 2584
BlsI GCNGC 3 cut(s) 1413, 1914, 2585
BmcAI AGTACT 1 cut(s) 1510
Bme1390I CCNGG 4 cut(s) 93, 731, 1423, 1972
Bme18I GGWCC 6 cut(s) 160, 839, 1169, 1217, 2134, 2561
BmeT110I CYCGRG 1 cut(s) 1775
BmgBI CACGTC 1 cut(s) 253
BmgT120I GGNCC 7 cut(s) 160, 839, 1169, 1217, 1433, 2134, 2561
BmiI GGNNCC 4 cut(s) 162, 1219, 1386, 1434
BmrFI CCNGG 4 cut(s) 93, 731, 1423, 1972
BmrI ACTGGG 2 cut(s) 491, 1875
BmsI GCATC 4 cut(s) 188, 358, 762, 2162
BmuI ACTGGG 2 cut(s) 491, 1875
BpmI CTGGAG 1 cut(s) 2108
Bpu14I TTCGAA 1 cut(s) 2072
BpuEI CTTGAG 4 cut(s) 140, 388, 616, 968
BpuMI CCSGG 2 cut(s) 93, 1972
BsaAI YACGTR 1 cut(s) 2665
BsaJI CCNNGG 6 cut(s) 729, 835, 1751, 1884, 2193, 2732
BsaWI WCCGGW 1 cut(s) 2500
Bsc4I CCNNNNNNNGG 3 cut(s) 658, 1812, 2131
Bse118I RCCGGY 2 cut(s) 245, 2297
Bse1I ACTGG 5 cut(s) 486, 632, 1798, 1870, 2350
Bse3DI GCAATG 6 cut(s) 48, 88, 1338, 1652, 2309, 2554
BseAI TCCGGA 1 cut(s) 2500
BseBI CCWGG 2 cut(s) 731, 1423
BseDI CCNNGG 6 cut(s) 729, 835, 1751, 1884, 2193, 2732
BseGI GGATG 3 cut(s) 1013, 1136, 2034
BseLI CCNNNNNNNGG 3 cut(s) 658, 1812, 2131
BseMI GCAATG 6 cut(s) 48, 88, 1338, 1652, 2309, 2554
BseMII CTCAG 5 cut(s) 352, 465, 529, 1472, 2525
BseNI ACTGG 5 cut(s) 486, 632, 1798, 1870, 2350
BseRI GAGGAG 2 cut(s) 2294, 2643
BseXI GCAGC 3 cut(s) 1423, 1899, 2595
BsgI GTGCAG 2 cut(s) 1311, 1898
BshFI GGCC 6 cut(s) 100, 249, 1435, 1444, 1741, 2301
BsiHKCI CYCGRG 1 cut(s) 1775
BsiSI CCGG 5 cut(s) 93, 246, 1971, 2298, 2501
BslFI GGGAC 3 cut(s) 1089, 1203, 1859
BslI CCNNNNNNNGG 3 cut(s) 658, 1812, 2131
BsmAI GTCTC 3 cut(s) 893, 2082, 2126
BsmFI GGGAC 3 cut(s) 1089, 1203, 1859
BsmI GAATGC 2 cut(s) 2275, 2739
BsnI GGCC 6 cut(s) 100, 249, 1435, 1444, 1741, 2301
BsoBI CYCGRG 1 cut(s) 1775
Bsp119I TTCGAA 1 cut(s) 2072
Bsp13I TCCGGA 1 cut(s) 2500
Bsp143I GATC 9 cut(s) 151, 235, 742, 1102, 1624, 1687, 1712, 2280, 2527
Bsp19I CCATGG 3 cut(s) 1884, 2193, 2732
BspACI CCGC 3 cut(s) 1456, 2559, 2603
BspANI GGCC 6 cut(s) 100, 249, 1435, 1444, 1741, 2301
BspCNI CTCAG 5 cut(s) 351, 464, 528, 1473, 2524
BspEI TCCGGA 1 cut(s) 2500
BspLI GGNNCC 4 cut(s) 162, 1219, 1386, 1434
BspPI GGATC 3 cut(s) 1720, 2275, 2522
BspT104I TTCGAA 1 cut(s) 2072
BsrDI GCAATG 6 cut(s) 48, 88, 1338, 1652, 2309, 2554
BsrFI RCCGGY 2 cut(s) 245, 2297
BsrI ACTGG 5 cut(s) 486, 632, 1798, 1870, 2350
BssAI RCCGGY 2 cut(s) 245, 2297
BssECI CCNNGG 6 cut(s) 729, 835, 1751, 1884, 2193, 2732
BssMI GATC 9 cut(s) 151, 235, 742, 1102, 1624, 1687, 1712, 2280, 2527
BssT1I CCWWGG 4 cut(s) 835, 1884, 2193, 2732
Bst2UI CCWGG 2 cut(s) 731, 1423
Bst4CI ACNGT 9 cut(s) 209, 1126, 1551, 1811, 1967, 2260, 2382, 2614, 2754
Bst6I CTCTTC 1 cut(s) 816
BstAPI GCANNNNNTGC 1 cut(s) 1912
BstBAI YACGTR 1 cut(s) 2665
BstBI TTCGAA 1 cut(s) 2072
BstC8I GCNNGC 1 cut(s) 177
BstDEI CTNAG 8 cut(s) 338, 451, 515, 884, 1252, 1481, 1991, 2511
BstDSI CCRYGG 4 cut(s) 1751, 1884, 2193, 2732
BstF5I GGATG 3 cut(s) 1013, 1136, 2034
BstH2I RGCGCY 1 cut(s) 2193
BstHHI GCGC 4 cut(s) 1923, 2143, 2192, 2588
BstKTI GATC 9 cut(s) 154, 238, 745, 1105, 1627, 1690, 1715, 2283, 2530
BstMAI GTCTC 3 cut(s) 893, 2082, 2126
BstMBI GATC 9 cut(s) 151, 235, 742, 1102, 1624, 1687, 1712, 2280, 2527
BstMWI GCNNNNNNNGC 6 cut(s) 1432, 1441, 1903, 1912, 1918, 2544
BstNI CCWGG 2 cut(s) 731, 1423
BstNSI RCATGY 2 cut(s) 649, 2731
BstSCI CCNGG 4 cut(s) 91, 729, 1421, 1970
BstSFI CTRYAG 3 cut(s) 526, 1596, 1958
BstV1I GCAGC 3 cut(s) 1423, 1899, 2595
BstX2I RGATCY 3 cut(s) 151, 1687, 1712
BstXI CCANNNNNNTGG 4 cut(s) 541, 1646, 1865, 2417
BstYI RGATCY 3 cut(s) 151, 1687, 1712
BsuI GTATCC 2 cut(s) 1883, 2627
BsuRI GGCC 6 cut(s) 100, 249, 1435, 1444, 1741, 2301
BtgI CCRYGG 4 cut(s) 1751, 1884, 2193, 2732
BtrI CACGTC 1 cut(s) 253
BtsCI GGATG 3 cut(s) 1013, 1136, 2034
BtsI GCAGTG 1 cut(s) 1299
BtsIMutI CAGTG 4 cut(s) 563, 1122, 1299, 2343
Cac8I GCNNGC 1 cut(s) 177
CaiI CAGNNNCTG 2 cut(s) 1555, 2758
CfoI GCGC 4 cut(s) 1923, 2143, 2192, 2588
Cfr10I RCCGGY 2 cut(s) 245, 2297
Cfr13I GGNCC 7 cut(s) 160, 839, 1169, 1217, 1433, 2134, 2561
Csp6I GTAC 7 cut(s) 387, 1494, 1509, 1547, 1802, 1936, 1968
CspCI CAANNNNNGTGG 2 cut(s) 808, 843
CviQI GTAC 7 cut(s) 387, 1494, 1509, 1547, 1802, 1936, 1968
DdeI CTNAG 8 cut(s) 338, 451, 515, 884, 1252, 1481, 1991, 2511
DpnI GATC 9 cut(s) 153, 237, 744, 1104, 1626, 1689, 1714, 2282, 2529
DpnII GATC 9 cut(s) 151, 235, 742, 1102, 1624, 1687, 1712, 2280, 2527
DraI TTTAAA 1 cut(s) 345
EaeI YGGCCR 2 cut(s) 247, 1442
Eam1104I CTCTTC 1 cut(s) 816
EarI CTCTTC 1 cut(s) 816
Eco130I CCWWGG 4 cut(s) 835, 1884, 2193, 2732
Eco47I GGWCC 6 cut(s) 160, 839, 1169, 1217, 2134, 2561
Eco57I CTGAAG 2 cut(s) 539, 2307
Eco88I CYCGRG 1 cut(s) 1775
EcoO109I RGGNCCY 3 cut(s) 160, 1217, 1433
EcoRI GAATTC 3 cut(s) 1835, 2210, 2496
EcoRII CCWGG 2 cut(s) 729, 1421
EcoT14I CCWWGG 4 cut(s) 835, 1884, 2193, 2732
ErhI CCWWGG 4 cut(s) 835, 1884, 2193, 2732
FaqI GGGAC 3 cut(s) 1089, 1203, 1859
FbaI TGATCA 1 cut(s) 235
Fnu4HI GCNGC 3 cut(s) 1412, 1913, 2584
FokI GGATG 3 cut(s) 1000, 1123, 2041
Fsp4HI GCNGC 3 cut(s) 1412, 1913, 2584
FspI TGCGCA 2 cut(s) 1922, 2142
GlaI GCGC 4 cut(s) 1922, 2142, 2191, 2587
GluI GCNGC 3 cut(s) 1412, 1913, 2584
GsuI CTGGAG 1 cut(s) 2108
HaeII RGCGCY 1 cut(s) 2193
HaeIII GGCC 6 cut(s) 100, 249, 1435, 1444, 1741, 2301
HapII CCGG 5 cut(s) 93, 246, 1971, 2298, 2501
HhaI GCGC 4 cut(s) 1923, 2143, 2192, 2588
Hin6I GCGC 4 cut(s) 1921, 2141, 2190, 2586
HinP1I GCGC 4 cut(s) 1921, 2141, 2190, 2586
HincII GTYRAC 2 cut(s) 686, 1987
HindII GTYRAC 2 cut(s) 686, 1987
HinfI GANTC 8 cut(s) 296, 950, 1418, 1558, 1588, 2387, 2458, 2682
HpaII CCGG 5 cut(s) 93, 246, 1971, 2298, 2501
HphI GGTGA 4 cut(s) 995, 1828, 1922, 2432
Hpy166II GTNNAC 4 cut(s) 256, 686, 1987, 2725
Hpy8I GTNNAC 4 cut(s) 256, 686, 1987, 2725
HpyCH4III ACNGT 9 cut(s) 209, 1126, 1551, 1811, 1967, 2260, 2382, 2614, 2754
HpyCH4IV ACGT 3 cut(s) 252, 502, 2664
HpyF10VI GCNNNNNNNGC 6 cut(s) 1432, 1441, 1903, 1912, 1918, 2544
HpyF3I CTNAG 8 cut(s) 338, 451, 515, 884, 1252, 1481, 1991, 2511
HpySE526I ACGT 3 cut(s) 252, 502, 2664
HspAI GCGC 4 cut(s) 1921, 2141, 2190, 2586
Kpn2I TCCGGA 1 cut(s) 2500
Ksp22I TGATCA 1 cut(s) 235
Kzo9I GATC 9 cut(s) 151, 235, 742, 1102, 1624, 1687, 1712, 2280, 2527
LmnI GCTCC 3 cut(s) 654, 1612, 2736
Lsp1109I GCAGC 3 cut(s) 1423, 1899, 2595
LweI GCATC 4 cut(s) 188, 358, 762, 2162
MaeII ACGT 3 cut(s) 252, 502, 2664
MaeIII GTNAC 5 cut(s) 371, 518, 637, 1230, 2316
MalI GATC 9 cut(s) 153, 237, 744, 1104, 1626, 1689, 1714, 2282, 2529
MboI GATC 9 cut(s) 151, 235, 742, 1102, 1624, 1687, 1712, 2280, 2527
MfeI CAATTG 2 cut(s) 1574, 2578
MflI RGATCY 3 cut(s) 151, 1687, 1712
MlsI TGGCCA 1 cut(s) 1444
MluNI TGGCCA 1 cut(s) 1444
MlyI GAGTC 1 cut(s) 959
MmeI TCCRAC 8 cut(s) 197, 324, 1029, 1278, 1541, 1956, 1990, 2659
Mox20I TGGCCA 1 cut(s) 1444
MroI TCCGGA 1 cut(s) 2500
MroXI GAANNNNTTC 4 cut(s) 490, 902, 1118, 1334
MscI TGGCCA 1 cut(s) 1444
MslI CAYNNNNRTG 3 cut(s) 819, 1226, 1678
Msp20I TGGCCA 1 cut(s) 1444
MspA1I CMGCKG 1 cut(s) 1414
MspI CCGG 5 cut(s) 93, 246, 1971, 2298, 2501
MspR9I CCNGG 4 cut(s) 93, 731, 1423, 1972
MunI CAATTG 2 cut(s) 1574, 2578
Mva1269I GAATGC 2 cut(s) 2275, 2739
MvaI CCWGG 2 cut(s) 731, 1423
MwoI GCNNNNNNNGC 6 cut(s) 1432, 1441, 1903, 1912, 1918, 2544
NciI CCSGG 2 cut(s) 93, 1972
NcoI CCATGG 3 cut(s) 1884, 2193, 2732
NdeII GATC 9 cut(s) 151, 235, 742, 1102, 1624, 1687, 1712, 2280, 2527
NlaIV GGNNCC 4 cut(s) 162, 1219, 1386, 1434
NmuCI GTSAC 2 cut(s) 1230, 2316
NsbI TGCGCA 2 cut(s) 1922, 2142
NspI RCATGY 2 cut(s) 649, 2731
NspV TTCGAA 1 cut(s) 2072
PctI GAATGC 2 cut(s) 2275, 2739
PdmI GAANNNNTTC 4 cut(s) 490, 902, 1118, 1334
PfeI GAWTC 7 cut(s) 296, 1418, 1558, 1588, 2387, 2458, 2682
PflMI CCANNNNNTGG 1 cut(s) 2131
PkrI GCNGC 3 cut(s) 1413, 1914, 2585
PleI GAGTC 1 cut(s) 958
PpsI GAGTC 1 cut(s) 958
Ppu21I YACGTR 1 cut(s) 2665
PpuMI RGGWCCY 2 cut(s) 160, 1217
PsiI TTATAA 1 cut(s) 1275
Psp5II RGGWCCY 2 cut(s) 160, 1217
Psp6I CCWGG 2 cut(s) 729, 1421
PspGI CCWGG 2 cut(s) 729, 1421
PspN4I GGNNCC 4 cut(s) 162, 1219, 1386, 1434
PspPI GGNCC 7 cut(s) 160, 839, 1169, 1217, 1433, 2134, 2561
PspPPI RGGWCCY 2 cut(s) 160, 1217
PsrI GAACNNNNNNTAC 2 cut(s) 1740, 1772
PstNI CAGNNNCTG 2 cut(s) 1555, 2758
PsuI RGATCY 3 cut(s) 151, 1687, 1712
PvuII CAGCTG 1 cut(s) 1414
RsaI GTAC 7 cut(s) 388, 1495, 1510, 1548, 1803, 1937, 1969
RsaNI GTAC 7 cut(s) 387, 1494, 1509, 1547, 1802, 1936, 1968
RseI CAYNNNNRTG 3 cut(s) 819, 1226, 1678
SatI GCNGC 3 cut(s) 1412, 1913, 2584
Sau3AI GATC 9 cut(s) 151, 235, 742, 1102, 1624, 1687, 1712, 2280, 2527
Sau96I GGNCC 7 cut(s) 160, 839, 1169, 1217, 1433, 2134, 2561
ScaI AGTACT 1 cut(s) 1510
SchI GAGTC 1 cut(s) 959
ScrFI CCNGG 4 cut(s) 93, 731, 1423, 1972
SfaNI GCATC 4 cut(s) 188, 358, 762, 2162
SfcI CTRYAG 3 cut(s) 526, 1596, 1958
SfiI GGCCNNNNNGGCC 1 cut(s) 1441
SfuI TTCGAA 1 cut(s) 2072
SinI GGWCC 6 cut(s) 160, 839, 1169, 1217, 2134, 2561
SmiMI CAYNNNNRTG 3 cut(s) 819, 1226, 1678
SmlI CTYRAG 4 cut(s) 155, 367, 595, 947
SmoI CTYRAG 4 cut(s) 155, 367, 595, 947
SpeI ACTAGT 1 cut(s) 1370
SsiI CCGC 3 cut(s) 1456, 2559, 2603
StyD4I CCNGG 4 cut(s) 91, 729, 1421, 1970
StyI CCWWGG 4 cut(s) 835, 1884, 2193, 2732
TaaI ACNGT 9 cut(s) 209, 1126, 1551, 1811, 1967, 2260, 2382, 2614, 2754
TaiI ACGT 3 cut(s) 255, 505, 2667
TaqI TCGA 4 cut(s) 992, 2072, 2330, 2394
TatI WGTACW 3 cut(s) 386, 1508, 1546
TfiI GAWTC 7 cut(s) 296, 1418, 1558, 1588, 2387, 2458, 2682
TscAI CASTG 4 cut(s) 563, 1129, 1299, 2350
TseFI GTSAC 2 cut(s) 1230, 2316
TseI GCWGC 3 cut(s) 1411, 1912, 2583
Tsp45I GTSAC 2 cut(s) 1230, 2316
TspDTI ATGAA 9 cut(s) 803, 1327, 1605, 1633, 1689, 1761, 2420, 2530, 2565
TspGWI ACGGA 2 cut(s) 1953, 2520
TspRI CASTG 4 cut(s) 563, 1129, 1299, 2350
Van91I CCANNNNNTGG 1 cut(s) 2131
VpaK11BI GGWCC 6 cut(s) 160, 839, 1169, 1217, 2134, 2561
XbaI TCTAGA 2 cut(s) 1027, 2263
XceI RCATGY 2 cut(s) 649, 2731
XcmI CCANNNNNNNNNTGG 1 cut(s) 1524
XmnI GAANNNNTTC 4 cut(s) 490, 902, 1118, 1334
ZrmI AGTACT 1 cut(s) 1510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.