MD08G1237900.v1.1

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Forward (+)
30499795 .. 30500244
450 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1237900.v1.1.491

Sequence Viewer

Length: 450 bp
ATGTTTCCAAAATTTGACATCCATGACCTTTTCAAGCGAAGGAGATACCAGTACCGAATCTACATAGAGAATGCATTTTTGGGGACCAAAGCTAGAGAAGCGAAATATAACACAGTGCTTGGTTTGATAACGAGCTTGGACCTTTCAAGCAACATGATATTTGGAGAAATCCCTGAAGAGCTGACCAGCCTCATTTGCTTGCAATCGTTGAACTTATCCAATAATCTTCACACAGGAAGAATCCCTTTCAAGATCAATGATATGGGATCATTAGAATCACTTGATTGCTATGCGAACCAACTTTCTGGTGAAATATCTCCAAGCATCTTGAATTTGATGTTTCTCCATTATCTGAATTTGTCCTATAACAATTTGATAGTGCATATGCCAAAAAGCACTCAACTTCAAAGCTTTGATCTGTCCAGTTATGCTGGCAATAAACTTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

150

Amino Acids

17.08

Weight (kDa)

6.89

Isoelectric Point (pI)

54.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 274
AcsI RAATTY 3 cut(s) 11, 331, 355
AcuI CTGAAG 1 cut(s) 195
AfaI GTAC 1 cut(s) 53
AgsI TTSAA 6 cut(s) 34, 147, 211, 250, 331, 407
AjuI GAANNNNNNNTTGG 2 cut(s) 62, 94
AluBI AGCT 4 cut(s) 92, 135, 181, 411
AluI AGCT 4 cut(s) 92, 135, 181, 411
AlwI GGATC 1 cut(s) 274
ApoI RAATTY 3 cut(s) 11, 331, 355
AspS9I GGNCC 2 cut(s) 84, 139
AsuHPI GGTGA 1 cut(s) 320
AvaII GGWCC 2 cut(s) 84, 139
BfaI CTAG 1 cut(s) 93
Bme18I GGWCC 2 cut(s) 84, 139
BmgT120I GGNCC 2 cut(s) 84, 139
BmiI GGNNCC 1 cut(s) 85
BmsI GCATC 1 cut(s) 333
Bse1I ACTGG 2 cut(s) 49, 423
BseGI GGATG 1 cut(s) 18
BseNI ACTGG 2 cut(s) 49, 423
BslFI GGGAC 1 cut(s) 97
BsmFI GGGAC 1 cut(s) 97
BsmI GAATGC 1 cut(s) 76
Bsp143I GATC 3 cut(s) 252, 266, 415
BspLI GGNNCC 1 cut(s) 85
BspPI GGATC 1 cut(s) 274
BspQI GCTCTTC 1 cut(s) 171
BsrI ACTGG 2 cut(s) 49, 423
BssMI GATC 3 cut(s) 252, 266, 415
Bst4CI ACNGT 1 cut(s) 115
Bst6I CTCTTC 1 cut(s) 171
BstC8I GCNNGC 2 cut(s) 200, 433
BstF5I GGATG 1 cut(s) 18
BstKTI GATC 3 cut(s) 255, 269, 418
BstMBI GATC 3 cut(s) 252, 266, 415
BstMWI GCNNNNNNNGC 2 cut(s) 98, 195
BstXI CCANNNNNNTGG 1 cut(s) 305
BtsCI GGATG 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 120
Cac8I GCNNGC 2 cut(s) 200, 433
Cfr13I GGNCC 2 cut(s) 84, 139
Csp6I GTAC 1 cut(s) 52
CviAII CATG 2 cut(s) 23, 154
CviJI RGCY 5 cut(s) 92, 135, 181, 189, 411
CviKI_1 RGCY 5 cut(s) 92, 135, 181, 189, 411
CviQI GTAC 1 cut(s) 52
DpnI GATC 3 cut(s) 254, 268, 417
DpnII GATC 3 cut(s) 252, 266, 415
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
Eco47I GGWCC 2 cut(s) 84, 139
Eco57I CTGAAG 1 cut(s) 195
EcoT22I ATGCAT 1 cut(s) 76
FaeI CATG 2 cut(s) 26, 157
FalI AAGNNNNNCTT 2 cut(s) 229, 261
FaqI GGGAC 1 cut(s) 97
FatI CATG 2 cut(s) 22, 153
FauNDI CATATG 1 cut(s) 384
FokI GGATG 1 cut(s) 5
FspBI CTAG 1 cut(s) 93
Hin1II CATG 2 cut(s) 26, 157
HindIII AAGCTT 1 cut(s) 409
HinfI GANTC 3 cut(s) 57, 240, 275
HphI GGTGA 1 cut(s) 320
Hpy188I TCNGA 1 cut(s) 354
Hpy188III TCNNGA 2 cut(s) 250, 328
HpyAV CCTTC 1 cut(s) 33
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4V TGCA 3 cut(s) 74, 202, 382
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 195
Hsp92II CATG 2 cut(s) 26, 157
Kzo9I GATC 3 cut(s) 252, 266, 415
LguI GCTCTTC 1 cut(s) 171
LpnPI CCDG 7 cut(s) 62, 186, 199, 219, 291, 417, 436
LweI GCATC 1 cut(s) 333
MaeI CTAG 1 cut(s) 93
MalI GATC 3 cut(s) 254, 268, 417
MboI GATC 3 cut(s) 252, 266, 415
MboII GAAGA 3 cut(s) 188, 218, 249
MluCI AATT 4 cut(s) 11, 331, 355, 370
MnlI CCTC 1 cut(s) 200
Mph1103I ATGCAT 1 cut(s) 76
Mva1269I GAATGC 1 cut(s) 76
MwoI GCNNNNNNNGC 2 cut(s) 98, 195
NdeI CATATG 1 cut(s) 384
NdeII GATC 3 cut(s) 252, 266, 415
NlaIII CATG 2 cut(s) 26, 157
NlaIV GGNNCC 1 cut(s) 85
NsiI ATGCAT 1 cut(s) 76
PciSI GCTCTTC 1 cut(s) 171
PctI GAATGC 1 cut(s) 76
PfeI GAWTC 3 cut(s) 57, 240, 275
PspN4I GGNNCC 1 cut(s) 85
PspPI GGNCC 2 cut(s) 84, 139
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
SapI GCTCTTC 1 cut(s) 171
Sau3AI GATC 3 cut(s) 252, 266, 415
Sau96I GGNCC 2 cut(s) 84, 139
SetI ASST 6 cut(s) 30, 94, 137, 144, 183, 413
SfaNI GCATC 1 cut(s) 333
SinI GGWCC 2 cut(s) 84, 139
Sse9I AATT 4 cut(s) 11, 331, 355, 370
SspMI CTAG 1 cut(s) 93
TaaI ACNGT 1 cut(s) 115
TasI AATT 4 cut(s) 11, 331, 355, 370
TfiI GAWTC 3 cut(s) 57, 240, 275
TscAI CASTG 1 cut(s) 120
TspRI CASTG 1 cut(s) 120
VpaK11BI GGWCC 2 cut(s) 84, 139
XapI RAATTY 3 cut(s) 11, 331, 355
XspI CTAG 1 cut(s) 93
Zsp2I ATGCAT 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.