pycom420g00410

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_420
OG0000281
Physical Location & Seq
Reverse (-)
514179 .. 515346
1168 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom420g00410.1

Sequence Viewer

Length: 1128 bp
ATGACAGTCATGAGACTTGTTTACCTACTCACCTTTCTTCTATCCATTGCGTCTTTTACACTTACCTTATGCAATGGAAACCTGGTCCATTTGCCTTGCAAAGAAAATGAGAGACAAACACTTCTTATGTTCAAGAAAGATCTCAATGATTCTTCAAATATGCTTTCCTCTTGGGATGGTGAAGGCGATTGTTGCAACTGGACTGGTGTTGCCTGCAGTAATTTAACCGGTCATGTCCGTGAGCTCCACCTTGCTGGTTATTTGGATGAAGTGACTGGTGAGAACCGTAAGCTGGGTGGCAAGGTAAATCCTTCTCTACTCAATTTAAAGCATCTCAGCCACTTGGACTTAAGCTCCAACAATTTTGAAGGACCACAGATTCCCAGCTTTTTGGGTTCTCTTAAACGTTTAAGGTATCTTGATCTCTCGAATGCAGGGTTCAACGGAAACATTCCTCATCAGTTGGGAAATCTCTCAAGTCTACGTTATCTCGACCTTTCTTACAACGTGTTGATGGTCGAGAATCTTGAATGGCTCTCTGGTCTTTCTCTGTTGAAACATCTTGACATGAATGATGTAGATCCCAACGCATCTCGTTGGTTACAAGTAAACACACTCCCTTCTCCGCTGGTAGAGTTACATTTTTCTGACTGCGAACTTCATCACTTGCCAAGTGGTATTGCGAACTTGACAAATCTTAAAGTTCTTGATCTTTCTCTCAATGATGTCAACTCTACCATACCTACATGGTTGTACAGTTTGGGCAATCTTGAGTCCCTCATTCTTTCTTCCAATGCTTTCCATGGTGAAATTTCGAGTTCCCTTGGAACTGACAGGGAAATCCCAAACTCCTTGGGAAATCTTTGTAGGTTGACTTTTGTTGGTCTAGGTAATAACAATTTTAGGGGAAGGGTATCAGAAATCTTAGAAAGTTTGTCTCGGTGTAGTTCTGATCAAATAGATTATTTAGATTTTTCGAATAATAATTTTTCAGGTCATTTATCTGGTATGCTAGGAATTTTTAAAAATTTAAATTCTCTTTATCTTTCGTATAATTCTATATCAAGTCTCATTCCGATGTCCTTAGGAAATCTATCACGCTTAGAATCCTTGGGCATTGATCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

376

Amino Acids

41.55

Weight (kDa)

5.5

Isoelectric Point (pI)

21.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 36 - 73 4.4e-13 Leucine rich repeat N-terminal domain
LRR_14 PF23598 101 - 169 4.3e-07 Leucine-rich repeat region
LRR_8 PF13855 136 - 191 3.5e-06 Leucine rich repeat
LRR_8 PF13855 210 - 266 1.3e-06 Leucine rich repeat
LRR_14 PF23598 212 - 365 8.7e-06 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 481
AciI CCGC 1 cut(s) 626
AclI AACGTT 1 cut(s) 406
AclWI GGATC 1 cut(s) 575
AcsI RAATTY 4 cut(s) 810, 1017, 1027, 1033
AfaI GTAC 1 cut(s) 755
AfiI CCNNNNNNNGG 1 cut(s) 292
AflII CTTAAG 1 cut(s) 349
AflIII ACRYGT 1 cut(s) 507
AgeI ACCGGT 1 cut(s) 227
AgsI TTSAA 6 cut(s) 133, 156, 368, 442, 530, 556
AjnI CCWGG 1 cut(s) 81
AluBI AGCT 4 cut(s) 244, 292, 354, 387
AluI AGCT 4 cut(s) 244, 292, 354, 387
Alw21I GWGCWC 1 cut(s) 246
Alw26I GTCTC 4 cut(s) 7, 106, 942, 1073
AlwI GGATC 1 cut(s) 575
ApoI RAATTY 4 cut(s) 810, 1017, 1027, 1033
AsiGI ACCGGT 1 cut(s) 227
AspS9I GGNCC 2 cut(s) 85, 371
AsuHPI GGTGA 4 cut(s) 22, 191, 290, 818
AsuII TTCGAA 1 cut(s) 977
AvaII GGWCC 2 cut(s) 85, 371
AxyI CCTNAGG 1 cut(s) 1084
BanII GRGCYC 1 cut(s) 246
Bbv12I GWGCWC 1 cut(s) 246
BccI CCATC 2 cut(s) 170, 508
BciT130I CCWGG 1 cut(s) 83
BclI TGATCA 1 cut(s) 952
BcoDI GTCTC 4 cut(s) 7, 106, 942, 1073
BfaI CTAG 2 cut(s) 887, 1013
BfmI CTRYAG 1 cut(s) 214
BfrI CTTAAG 1 cut(s) 349
BglII AGATCT 1 cut(s) 139
Bme1390I CCNGG 1 cut(s) 83
Bme18I GGWCC 2 cut(s) 85, 371
BmgT120I GGNCC 2 cut(s) 85, 371
BmrFI CCNGG 1 cut(s) 83
BmsI GCATC 2 cut(s) 340, 599
Bpu14I TTCGAA 1 cut(s) 977
BpuEI CTTGAG 2 cut(s) 460, 791
Bsa29I ATCGAT 1 cut(s) 1123
BsaBI GATNNNNATC 1 cut(s) 579
BsaJI CCNNGG 4 cut(s) 802, 823, 852, 1110
BsaWI WCCGGW 1 cut(s) 227
BsaXI ACNNNNNCTCC 2 cut(s) 338, 368
Bsc4I CCNNNNNNNGG 1 cut(s) 292
Bse118I RCCGGY 1 cut(s) 227
Bse1I ACTGG 3 cut(s) 203, 208, 280
Bse21I CCTNAGG 1 cut(s) 1084
Bse3DI GCAATG 2 cut(s) 45, 79
Bse8I GATNNNNATC 1 cut(s) 579
BseBI CCWGG 1 cut(s) 83
BseCI ATCGAT 1 cut(s) 1123
BseDI CCNNGG 4 cut(s) 802, 823, 852, 1110
BseGI GGATG 2 cut(s) 181, 271
BseJI GATNNNNATC 1 cut(s) 579
BseLI CCNNNNNNNGG 1 cut(s) 292
BseMI GCAATG 2 cut(s) 45, 79
BseMII CTCAG 1 cut(s) 349
BseNI ACTGG 3 cut(s) 203, 208, 280
BseYI CCCAGC 2 cut(s) 292, 383
BshTI ACCGGT 1 cut(s) 227
BshVI ATCGAT 1 cut(s) 1123
BsiHKAI GWGCWC 1 cut(s) 246
BsiSI CCGG 1 cut(s) 228
BslFI GGGAC 1 cut(s) 760
BslI CCNNNNNNNGG 1 cut(s) 292
BsmAI GTCTC 4 cut(s) 7, 106, 942, 1073
BsmFI GGGAC 1 cut(s) 760
BsmI GAATGC 1 cut(s) 436
Bsp119I TTCGAA 1 cut(s) 977
Bsp1286I GDGCHC 1 cut(s) 246
Bsp1407I TGTACA 1 cut(s) 753
Bsp143I GATC 6 cut(s) 139, 421, 580, 709, 952, 1120
Bsp19I CCATGG 1 cut(s) 802
BspACI CCGC 1 cut(s) 626
BspCNI CTCAG 1 cut(s) 348
BspDI ATCGAT 1 cut(s) 1123
BspHI TCATGA 1 cut(s) 9
BspMAI CTGCAG 1 cut(s) 218
BspPI GGATC 1 cut(s) 575
BspT104I TTCGAA 1 cut(s) 977
BspTI CTTAAG 1 cut(s) 349
BsrDI GCAATG 2 cut(s) 45, 79
BsrFI RCCGGY 1 cut(s) 227
BsrGI TGTACA 1 cut(s) 753
BsrI ACTGG 3 cut(s) 203, 208, 280
BssAI RCCGGY 1 cut(s) 227
BssECI CCNNGG 4 cut(s) 802, 823, 852, 1110
BssMI GATC 6 cut(s) 139, 421, 580, 709, 952, 1120
BssT1I CCWWGG 4 cut(s) 802, 823, 852, 1110
Bst2UI CCWGG 1 cut(s) 83
Bst4CI ACNGT 3 cut(s) 7, 287, 758
BstAFI CTTAAG 1 cut(s) 349
BstAUI TGTACA 1 cut(s) 753
BstBI TTCGAA 1 cut(s) 977
BstC8I GCNNGC 1 cut(s) 214
BstDEI CTNAG 4 cut(s) 335, 925, 1084, 1102
BstDSI CCRYGG 1 cut(s) 802
BstF5I GGATG 2 cut(s) 181, 271
BstKTI GATC 6 cut(s) 142, 424, 583, 712, 955, 1123
BstMAI GTCTC 4 cut(s) 7, 106, 942, 1073
BstMBI GATC 6 cut(s) 139, 421, 580, 709, 952, 1120
BstMWI GCNNNNNNNGC 1 cut(s) 192
BstNI CCWGG 1 cut(s) 83
BstSCI CCNGG 1 cut(s) 81
BstSFI CTRYAG 1 cut(s) 214
BstX2I RGATCY 2 cut(s) 139, 580
BstXI CCANNNNNNTGG 2 cut(s) 254, 391
BstYI RGATCY 2 cut(s) 139, 580
Bsu15I ATCGAT 1 cut(s) 1123
Bsu36I CCTNAGG 1 cut(s) 1084
BsuTUI ATCGAT 1 cut(s) 1123
BtgI CCRYGG 1 cut(s) 802
BtsCI GGATG 2 cut(s) 181, 271
Cac8I GCNNGC 1 cut(s) 214
CciI TCATGA 1 cut(s) 9
Cfr10I RCCGGY 1 cut(s) 227
Cfr13I GGNCC 2 cut(s) 85, 371
ClaI ATCGAT 1 cut(s) 1123
CseI GACGC 1 cut(s) 39
CsiI ACCWGGT 1 cut(s) 81
Csp6I GTAC 1 cut(s) 754
CspAI ACCGGT 1 cut(s) 227
CviAII CATG 5 cut(s) 10, 233, 568, 747, 803
CviJI RGCY 6 cut(s) 244, 292, 339, 354, 387, 535
CviKI_1 RGCY 6 cut(s) 244, 292, 339, 354, 387, 535
CviQI GTAC 1 cut(s) 754
DdeI CTNAG 4 cut(s) 335, 925, 1084, 1102
DpnI GATC 6 cut(s) 141, 423, 582, 711, 954, 1122
DpnII GATC 6 cut(s) 139, 421, 580, 709, 952, 1120
DraI TTTAAA 3 cut(s) 327, 1024, 1032
Ecl136II GAGCTC 1 cut(s) 244
Eco130I CCWWGG 4 cut(s) 802, 823, 852, 1110
Eco24I GRGCYC 1 cut(s) 246
Eco47I GGWCC 2 cut(s) 85, 371
Eco53kI GAGCTC 1 cut(s) 244
Eco81I CCTNAGG 1 cut(s) 1084
EcoICRI GAGCTC 1 cut(s) 244
EcoRII CCWGG 1 cut(s) 81
EcoT14I CCWWGG 4 cut(s) 802, 823, 852, 1110
EcoT38I GRGCYC 1 cut(s) 246
ErhI CCWWGG 4 cut(s) 802, 823, 852, 1110
FaeI CATG 5 cut(s) 13, 236, 571, 750, 806
FaqI GGGAC 1 cut(s) 760
FatI CATG 5 cut(s) 9, 232, 567, 746, 802
FbaI TGATCA 1 cut(s) 952
FblI GTMKAC 1 cut(s) 481
FokI GGATG 2 cut(s) 188, 278
FriOI GRGCYC 1 cut(s) 246
FspBI CTAG 2 cut(s) 887, 1013
GsaI CCCAGC 2 cut(s) 296, 387
HapII CCGG 1 cut(s) 228
HgaI GACGC 1 cut(s) 39
Hin1II CATG 5 cut(s) 13, 236, 571, 750, 806
HincII GTYRAC 2 cut(s) 730, 873
HindII GTYRAC 2 cut(s) 730, 873
HinfI GANTC 5 cut(s) 149, 379, 523, 773, 1106
HpaII CCGG 1 cut(s) 228
HphI GGTGA 4 cut(s) 22, 191, 290, 818
Hpy166II GTNNAC 5 cut(s) 22, 482, 610, 730, 873
Hpy188I TCNGA 4 cut(s) 649, 919, 952, 1077
Hpy8I GTNNAC 5 cut(s) 22, 482, 610, 730, 873
HpyAV CCTTC 5 cut(s) 176, 321, 362, 630, 903
HpyCH4III ACNGT 3 cut(s) 7, 287, 758
HpyCH4IV ACGT 3 cut(s) 406, 484, 507
HpyCH4V TGCA 5 cut(s) 72, 99, 195, 216, 434
HpyF10VI GCNNNNNNNGC 1 cut(s) 192
HpyF3I CTNAG 4 cut(s) 335, 925, 1084, 1102
HpySE526I ACGT 3 cut(s) 406, 484, 507
Hsp92II CATG 5 cut(s) 13, 236, 571, 750, 806
Ksp22I TGATCA 1 cut(s) 952
Kzo9I GATC 6 cut(s) 139, 421, 580, 709, 952, 1120
LmnI GCTCC 2 cut(s) 249, 359
LweI GCATC 2 cut(s) 340, 599
MabI ACCWGGT 1 cut(s) 81
MaeI CTAG 2 cut(s) 887, 1013
MaeII ACGT 3 cut(s) 406, 484, 507
MaeIII GTNAC 3 cut(s) 271, 600, 636
MalI GATC 6 cut(s) 141, 423, 582, 711, 954, 1122
MboI GATC 6 cut(s) 139, 421, 580, 709, 952, 1120
MboII GAAGA 3 cut(s) 29, 144, 780
MflI RGATCY 2 cut(s) 139, 580
MhlI GDGCHC 1 cut(s) 246
MlyI GAGTC 1 cut(s) 782
MmeI TCCRAC 1 cut(s) 381
MnlI CCTC 3 cut(s) 178, 465, 788
MseI TTAA 8 cut(s) 224, 326, 350, 402, 410, 699, 1023, 1031
MslI CAYNNNNRTG 2 cut(s) 237, 1076
MspA1I CMGCKG 1 cut(s) 628
MspCI CTTAAG 1 cut(s) 349
MspI CCGG 1 cut(s) 228
MspR9I CCNGG 1 cut(s) 83
Mva1269I GAATGC 1 cut(s) 436
MvaI CCWGG 1 cut(s) 83
MwoI GCNNNNNNNGC 1 cut(s) 192
NcoI CCATGG 1 cut(s) 802
NdeII GATC 6 cut(s) 139, 421, 580, 709, 952, 1120
NlaIII CATG 5 cut(s) 13, 236, 571, 750, 806
NmuCI GTSAC 1 cut(s) 271
NspV TTCGAA 1 cut(s) 977
PagI TCATGA 1 cut(s) 9
PctI GAATGC 1 cut(s) 436
PfeI GAWTC 4 cut(s) 149, 379, 523, 1106
PinAI ACCGGT 1 cut(s) 227
PleI GAGTC 1 cut(s) 781
PpsI GAGTC 1 cut(s) 781
Psp124BI GAGCTC 1 cut(s) 246
Psp1406I AACGTT 1 cut(s) 406
Psp6I CCWGG 1 cut(s) 81
PspFI CCCAGC 2 cut(s) 292, 383
PspGI CCWGG 1 cut(s) 81
PspPI GGNCC 2 cut(s) 85, 371
PstI CTGCAG 1 cut(s) 218
PsuI RGATCY 2 cut(s) 139, 580
RsaI GTAC 1 cut(s) 755
RsaNI GTAC 1 cut(s) 754
RseI CAYNNNNRTG 2 cut(s) 237, 1076
SacI GAGCTC 1 cut(s) 246
SaqAI TTAA 8 cut(s) 224, 326, 350, 402, 410, 699, 1023, 1031
Sau3AI GATC 6 cut(s) 139, 421, 580, 709, 952, 1120
Sau96I GGNCC 2 cut(s) 85, 371
SchI GAGTC 1 cut(s) 782
ScrFI CCNGG 1 cut(s) 83
SduI GDGCHC 1 cut(s) 246
SexAI ACCWGGT 1 cut(s) 81
SfaNI GCATC 2 cut(s) 340, 599
SfcI CTRYAG 1 cut(s) 214
SfuI TTCGAA 1 cut(s) 977
SinI GGWCC 2 cut(s) 85, 371
SmiI ATTTAAAT 1 cut(s) 1032
SmiMI CAYNNNNRTG 2 cut(s) 237, 1076
SmlI CTYRAG 3 cut(s) 349, 475, 770
SmoI CTYRAG 3 cut(s) 349, 475, 770
SsiI CCGC 1 cut(s) 626
SspMI CTAG 2 cut(s) 887, 1013
SstI GAGCTC 1 cut(s) 246
StyD4I CCNGG 1 cut(s) 81
StyI CCWWGG 4 cut(s) 802, 823, 852, 1110
SwaI ATTTAAAT 1 cut(s) 1032
TaaI ACNGT 3 cut(s) 7, 287, 758
TaiI ACGT 3 cut(s) 409, 487, 510
TaqI TCGA 6 cut(s) 428, 492, 519, 815, 977, 1123
TatI WGTACW 1 cut(s) 753
TfiI GAWTC 4 cut(s) 149, 379, 523, 1106
Tru1I TTAA 8 cut(s) 224, 326, 350, 402, 410, 699, 1023, 1031
Tru9I TTAA 8 cut(s) 224, 326, 350, 402, 410, 699, 1023, 1031
TseFI GTSAC 1 cut(s) 271
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 3 cut(s) 282, 584, 650
TspGWI ACGGA 2 cut(s) 227, 459
Vha464I CTTAAG 1 cut(s) 349
VpaK11BI GGWCC 2 cut(s) 85, 371
XapI RAATTY 4 cut(s) 810, 1017, 1027, 1033
XmiI GTMKAC 1 cut(s) 481
XspI CTAG 2 cut(s) 887, 1013
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.