Rroxscaffold_103G00450560

DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000103
OG0000098
Physical Location & Seq
Forward (+)
26404 .. 26979
576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_103G00450560.1

Sequence Viewer

Length: 576 bp
ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTTAAATTCCAAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTCGTACTGGAAATCAGAATCAAACGAGCTTTTACCCTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATCTTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATCAGCCCGCCGAAGCAGGCTTTGGGTCCAAAAAGAGGGGCAGTGCCCCGCCTCCGATTCACGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTCGCCCGAAGGCTCCCACTTATACTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

20.83

Weight (kDa)

9.83

Isoelectric Point (pI)

46.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000098)

Species Orthologous Gene IDs
pyrus_communis pycom05g23460 pycom581g00100 pycom849g00040
rosa_multiflora Rmu_sc0019961.1_g000001
rosa_roxburghii Rroxscaffold_100G00451180 Rroxscaffold_102G00450890 Rroxscaffold_102G00450920 Rroxscaffold_103G00450530 Rroxscaffold_103G00450560 Rroxscaffold_104G00444830 Rroxscaffold_104G00444900 Rroxscaffold_105G00447100 Rroxscaffold_105G00447180 Rroxscaffold_107G00442470 Rroxscaffold_107G00442480 Rroxscaffold_107G00442520 Rroxscaffold_107G00442540 Rroxscaffold_107G00442560 Rroxscaffold_107G00442570 Rroxscaffold_107G00442600 Rroxscaffold_107G00442630 Rroxscaffold_107G00442650 Rroxscaffold_107G00442660 Rroxscaffold_108G00451480 Rroxscaffold_110G00451510 Rroxscaffold_111G00451550 Rroxscaffold_112G00451590 Rroxscaffold_113G00451630 Rroxscaffold_114G00451650 Rroxscaffold_116G00451710 Rroxscaffold_117G00451740 Rroxscaffold_117G00451750 Rroxscaffold_121G00451840 Rroxscaffold_122G00451860 Rroxscaffold_122G00451880 Rroxscaffold_123G00451920 Rroxscaffold_124G00451950 Rroxscaffold_128G00452040 Rroxscaffold_128G00452060 Rroxscaffold_12G00450600 Rroxscaffold_12G00450620 Rroxscaffold_131G00452110 Rroxscaffold_138G00452180 Rroxscaffold_13G00448630 Rroxscaffold_145G00452240 Rroxscaffold_14G00441930 Rroxscaffold_14G00441950 Rroxscaffold_14G00442050 Rroxscaffold_14G00442080 Rroxscaffold_15G00447500 Rroxscaffold_162G00450770 Rroxscaffold_16G00446200 Rroxscaffold_16G00446210 Rroxscaffold_16G00446240 Rroxscaffold_17G00435360 Rroxscaffold_17G00435410 Rroxscaffold_17G00435450 Rroxscaffold_17G00435480 Rroxscaffold_17G00435500 Rroxscaffold_17G00435600 Rroxscaffold_17G00435660 Rroxscaffold_17G00435680 Rroxscaffold_17G00435760 Rroxscaffold_17G00435780 Rroxscaffold_17G00435810 Rroxscaffold_17G00435840 Rroxscaffold_17G00435870 Rroxscaffold_18G00446030 Rroxscaffold_18G00446060 Rroxscaffold_18G00446130 Rroxscaffold_19G00448890 Rroxscaffold_19G00448920 Rroxscaffold_19G00448940 Rroxscaffold_19G00448970 Rroxscaffold_1G00000020 Rroxscaffold_1G00000050 Rroxscaffold_1G00000160 Rroxscaffold_20G00445060 Rroxscaffold_20G00445100 Rroxscaffold_20G00445130 Rroxscaffold_21G00439490 Rroxscaffold_21G00439560 Rroxscaffold_21G00439580 Rroxscaffold_21G00439620 Rroxscaffold_21G00439630 Rroxscaffold_22G00439910 Rroxscaffold_22G00439950 Rroxscaffold_23G00451020 Rroxscaffold_23G00451040 Rroxscaffold_23G00451070 Rroxscaffold_24G00444920 Rroxscaffold_24G00444950 Rroxscaffold_24G00445000 Rroxscaffold_25G00450200 Rroxscaffold_26G00447730 Rroxscaffold_27G00446570 Rroxscaffold_27G00446600 Rroxscaffold_28G00446830 Rroxscaffold_28G00446860 Rroxscaffold_28G00446910 Rroxscaffold_29G00441560 Rroxscaffold_29G00441570 Rroxscaffold_29G00441590 Rroxscaffold_29G00441630 Rroxscaffold_29G00441640 Rroxscaffold_29G00441670 Rroxscaffold_29G00441680 Rroxscaffold_29G00441860 Rroxscaffold_30G00449540 Rroxscaffold_30G00449570 Rroxscaffold_30G00449580 Rroxscaffold_31G00438120 Rroxscaffold_31G00438140 Rroxscaffold_31G00438180 Rroxscaffold_31G00438190 Rroxscaffold_31G00438220 Rroxscaffold_31G00438230 Rroxscaffold_32G00442740 Rroxscaffold_32G00442760 Rroxscaffold_33G00439670 Rroxscaffold_33G00439720 Rroxscaffold_33G00439740 Rroxscaffold_33G00439760 Rroxscaffold_33G00439820 Rroxscaffold_34G00443140 Rroxscaffold_34G00443200 Rroxscaffold_34G00443250 Rroxscaffold_34G00443370 Rroxscaffold_34G00443390 Rroxscaffold_35G00441050 Rroxscaffold_35G00441080 Rroxscaffold_35G00441090 Rroxscaffold_35G00441170 Rroxscaffold_35G00441190 Rroxscaffold_35G00441230 Rroxscaffold_36G00440100 Rroxscaffold_36G00440170 Rroxscaffold_37G00445170 Rroxscaffold_38G00444440 Rroxscaffold_38G00444500 Rroxscaffold_38G00444550 Rroxscaffold_39G00448200 Rroxscaffold_39G00448210 Rroxscaffold_40G00447650 Rroxscaffold_40G00447680 Rroxscaffold_40G00447700 Rroxscaffold_40G00447710 Rroxscaffold_41G00451110 Rroxscaffold_41G00451130 Rroxscaffold_42G00450430 Rroxscaffold_43G00449800 Rroxscaffold_43G00449860 Rroxscaffold_43G00449920 Rroxscaffold_43G00449930 Rroxscaffold_44G00440540 Rroxscaffold_44G00440580 Rroxscaffold_44G00440660 Rroxscaffold_45G00438900 Rroxscaffold_45G00438930 Rroxscaffold_45G00438950 Rroxscaffold_47G00444020 Rroxscaffold_47G00444060 Rroxscaffold_47G00444120 Rroxscaffold_48G00448450 Rroxscaffold_49G00438570 Rroxscaffold_49G00438650 Rroxscaffold_49G00438700 Rroxscaffold_4G00321080 Rroxscaffold_50G00444130 Rroxscaffold_50G00444200 Rroxscaffold_50G00444210 Rroxscaffold_50G00444330 Rroxscaffold_50G00444350 Rroxscaffold_51G00447840 Rroxscaffold_52G00439310 Rroxscaffold_52G00439390 Rroxscaffold_54G00443660 Rroxscaffold_55G00450020 Rroxscaffold_55G00450050 Rroxscaffold_55G00450060 Rroxscaffold_55G00450080 Rroxscaffold_55G00450090 Rroxscaffold_55G00450120 Rroxscaffold_57G00443070 Rroxscaffold_59G00442210 Rroxscaffold_59G00442220 Rroxscaffold_60G00448360 Rroxscaffold_60G00448370 Rroxscaffold_60G00448410 Rroxscaffold_61G00449990 Rroxscaffold_62G00438040 Rroxscaffold_62G00438060 Rroxscaffold_62G00438080 Rroxscaffold_63G00444410 Rroxscaffold_63G00444430 Rroxscaffold_64G00450670 Rroxscaffold_65G00445300 Rroxscaffold_65G00445340 Rroxscaffold_65G00445360 Rroxscaffold_65G00445380 Rroxscaffold_65G00445420 Rroxscaffold_66G00437660 Rroxscaffold_66G00437820 Rroxscaffold_66G00437840 Rroxscaffold_66G00437890 Rroxscaffold_67G00448140 Rroxscaffold_67G00448150 Rroxscaffold_68G00447010 Rroxscaffold_69G00446670 Rroxscaffold_69G00446710 Rroxscaffold_69G00446770 Rroxscaffold_6G00387820 Rroxscaffold_70G00446300 Rroxscaffold_70G00446340 Rroxscaffold_70G00446380 Rroxscaffold_71G00445590 Rroxscaffold_71G00445600 Rroxscaffold_71G00445630 Rroxscaffold_71G00445690 Rroxscaffold_71G00445720 Rroxscaffold_71G00445740 Rroxscaffold_71G00445770 Rroxscaffold_72G00449370 Rroxscaffold_72G00449410 Rroxscaffold_72G00449450 Rroxscaffold_73G00439000 Rroxscaffold_73G00439060 Rroxscaffold_73G00439160 Rroxscaffold_73G00439270 Rroxscaffold_74G00442920 Rroxscaffold_75G00447260 Rroxscaffold_75G00447290 Rroxscaffold_75G00447430 Rroxscaffold_76G00448540 Rroxscaffold_76G00448610 Rroxscaffold_77G00449150 Rroxscaffold_78G00449610 Rroxscaffold_79G00450210 Rroxscaffold_80G00450330 Rroxscaffold_80G00450350 Rroxscaffold_81G00450480 Rroxscaffold_83G00450980 Rroxscaffold_85G00451230 Rroxscaffold_86G00451270 Rroxscaffold_89G00451410 Rroxscaffold_90G00448760 Rroxscaffold_90G00448770 Rroxscaffold_90G00448820 Rroxscaffold_91G00443000 Rroxscaffold_91G00443060 Rroxscaffold_92G00446430 Rroxscaffold_93G00440830 Rroxscaffold_93G00440850 Rroxscaffold_93G00440860 Rroxscaffold_93G00440880 Rroxscaffold_93G00440910 Rroxscaffold_94G00445830 Rroxscaffold_94G00445910 Rroxscaffold_94G00445940 Rroxscaffold_94G00446020 Rroxscaffold_97G00442340 Rroxscaffold_97G00442390 Rroxscaffold_97G00442400 Rroxscaffold_98G00451350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 252
Acc36I ACCTGC 1 cut(s) 252
AccI GTMKAC 1 cut(s) 550
AciI CCGC 5 cut(s) 269, 304, 318, 359, 501
AclI AACGTT 1 cut(s) 389
AclWI GGATC 3 cut(s) 34, 136, 318
AcsI RAATTY 1 cut(s) 110
AfaI GTAC 1 cut(s) 163
AfiI CCNNNNNNNGG 2 cut(s) 345, 371
AjuI GAANNNNNNNTTGG 2 cut(s) 315, 347
AluBI AGCT 4 cut(s) 105, 186, 229, 480
AluI AGCT 4 cut(s) 105, 186, 229, 480
Alw21I GWGCWC 1 cut(s) 231
AlwI GGATC 3 cut(s) 34, 136, 318
AoxI GGCC 1 cut(s) 136
ApeKI GCWGC 1 cut(s) 58
ApoI RAATTY 1 cut(s) 110
AspS9I GGNCC 1 cut(s) 336
AsuC2I CCSGG 1 cut(s) 308
AvaII GGWCC 1 cut(s) 336
BaeGI GKGCMC 1 cut(s) 358
BanII GRGCYC 1 cut(s) 231
BauI CACGAG 1 cut(s) 206
BbsI GAAGAC 2 cut(s) 292, 483
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 1 cut(s) 45
BcnI CCSGG 1 cut(s) 308
BfaI CTAG 2 cut(s) 102, 470
BfuAI ACCTGC 1 cut(s) 252
BisI GCNGC 2 cut(s) 59, 269
BlsI GCNGC 2 cut(s) 60, 270
Bme1390I CCNGG 1 cut(s) 308
Bme18I GGWCC 1 cut(s) 336
BmgT120I GGNCC 1 cut(s) 336
BmiI GGNNCC 2 cut(s) 337, 426
BmrFI CCNGG 1 cut(s) 308
BoxI GACNNNNGTC 1 cut(s) 472
BpiI GAAGAC 2 cut(s) 292, 483
BplI GAGNNNNNCTC 2 cut(s) 464, 496
BpuEI CTTGAG 1 cut(s) 431
BpuMI CCSGG 1 cut(s) 308
Bsa29I ATCGAT 1 cut(s) 131
BsaJI CCNNGG 1 cut(s) 525
Bsc4I CCNNNNNNNGG 2 cut(s) 345, 371
Bse1I ACTGG 2 cut(s) 69, 169
BseCI ATCGAT 1 cut(s) 131
BseDI CCNNGG 1 cut(s) 525
BseLI CCNNNNNNNGG 2 cut(s) 345, 371
BseNI ACTGG 2 cut(s) 69, 169
BseSI GKGCMC 1 cut(s) 358
BseXI GCAGC 1 cut(s) 45
BseYI CCCAGC 1 cut(s) 273
BshFI GGCC 1 cut(s) 138
BshVI ATCGAT 1 cut(s) 131
BsiHKAI GWGCWC 1 cut(s) 231
BsiSI CCGG 1 cut(s) 308
BslFI GGGAC 1 cut(s) 570
BslI CCNNNNNNNGG 2 cut(s) 345, 371
BsmFI GGGAC 1 cut(s) 570
BsnI GGCC 1 cut(s) 138
Bsp1286I GDGCHC 2 cut(s) 231, 358
Bsp143I GATC 3 cut(s) 26, 128, 310
BspACI CCGC 5 cut(s) 269, 304, 318, 359, 501
BspANI GGCC 1 cut(s) 138
BspDI ATCGAT 1 cut(s) 131
BspLI GGNNCC 2 cut(s) 337, 426
BspMI ACCTGC 1 cut(s) 252
BspPI GGATC 3 cut(s) 34, 136, 318
BspQI GCTCTTC 1 cut(s) 4
BsrI ACTGG 2 cut(s) 69, 169
BssECI CCNNGG 1 cut(s) 525
BssMI GATC 3 cut(s) 26, 128, 310
BssSI CACGAG 1 cut(s) 206
BssT1I CCWWGG 1 cut(s) 525
Bst2BI CACGAG 1 cut(s) 206
Bst4CI ACNGT 2 cut(s) 151, 561
Bst6I CTCTTC 1 cut(s) 4
BstC8I GCNNGC 2 cut(s) 318, 328
BstDEI CTNAG 1 cut(s) 235
BstKTI GATC 3 cut(s) 29, 131, 313
BstMBI GATC 3 cut(s) 26, 128, 310
BstMWI GCNNNNNNNGC 3 cut(s) 50, 274, 509
BstPAI GACNNNNGTC 1 cut(s) 472
BstSCI CCNGG 1 cut(s) 306
BstSLI GKGCMC 1 cut(s) 358
BstV1I GCAGC 1 cut(s) 45
BstV2I GAAGAC 2 cut(s) 292, 483
Bsu15I ATCGAT 1 cut(s) 131
BsuRI GGCC 1 cut(s) 138
BsuTUI ATCGAT 1 cut(s) 131
BtsI GCAGTG 1 cut(s) 358
BtsIMutI CAGTG 2 cut(s) 358, 566
BveI ACCTGC 1 cut(s) 252
Cac8I GCNNGC 2 cut(s) 318, 328
Cfr13I GGNCC 1 cut(s) 336
ClaI ATCGAT 1 cut(s) 131
Csp6I GTAC 1 cut(s) 162
CviQI GTAC 1 cut(s) 162
DdeI CTNAG 1 cut(s) 235
DpnI GATC 3 cut(s) 28, 130, 312
DpnII GATC 3 cut(s) 26, 128, 310
DraI TTTAAA 1 cut(s) 109
Eam1104I CTCTTC 1 cut(s) 4
EarI CTCTTC 1 cut(s) 4
EciI GGCGGA 1 cut(s) 293
Ecl136II GAGCTC 1 cut(s) 229
Eco130I CCWWGG 1 cut(s) 525
Eco24I GRGCYC 1 cut(s) 231
Eco47I GGWCC 1 cut(s) 336
Eco53kI GAGCTC 1 cut(s) 229
EcoICRI GAGCTC 1 cut(s) 229
EcoT14I CCWWGG 1 cut(s) 525
EcoT38I GRGCYC 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 525
FaiI YATR 2 cut(s) 47, 435
FaqI GGGAC 1 cut(s) 570
FauI CCCGC 3 cut(s) 325, 366, 508
FblI GTMKAC 1 cut(s) 550
Fnu4HI GCNGC 2 cut(s) 59, 269
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 2 cut(s) 59, 269
FspBI CTAG 2 cut(s) 102, 470
GluI GCNGC 2 cut(s) 59, 269
GsaI CCCAGC 1 cut(s) 277
HaeIII GGCC 1 cut(s) 138
HapII CCGG 1 cut(s) 308
HinfI GANTC 5 cut(s) 175, 367, 473, 506, 566
HpaII CCGG 1 cut(s) 308
Hpy166II GTNNAC 1 cut(s) 551
Hpy188I TCNGA 4 cut(s) 94, 174, 366, 467
Hpy8I GTNNAC 1 cut(s) 551
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 2 cut(s) 17, 415
HpyCH4III ACNGT 2 cut(s) 151, 561
HpyCH4IV ACGT 2 cut(s) 39, 389
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 274, 509
HpyF3I CTNAG 1 cut(s) 235
HpySE526I ACGT 2 cut(s) 39, 389
Kzo9I GATC 3 cut(s) 26, 128, 310
LguI GCTCTTC 1 cut(s) 4
LmnI GCTCC 1 cut(s) 430
Lsp1109I GCAGC 1 cut(s) 45
MaeI CTAG 2 cut(s) 102, 470
MaeII ACGT 2 cut(s) 39, 389
MaeIII GTNAC 1 cut(s) 83
MalI GATC 3 cut(s) 28, 130, 312
MboI GATC 3 cut(s) 26, 128, 310
MboII GAAGA 3 cut(s) 21, 292, 483
MhlI GDGCHC 2 cut(s) 231, 358
MluCI AATT 1 cut(s) 110
MlyI GAGTC 1 cut(s) 482
MmeI TCCRAC 1 cut(s) 445
MnlI CCTC 4 cut(s) 109, 339, 372, 453
MseI TTAA 4 cut(s) 108, 257, 392, 574
MspA1I CMGCKG 1 cut(s) 503
MspI CCGG 1 cut(s) 308
MspR9I CCNGG 1 cut(s) 308
MwoI GCNNNNNNNGC 3 cut(s) 50, 274, 509
NciI CCSGG 1 cut(s) 308
NdeII GATC 3 cut(s) 26, 128, 310
NlaIV GGNNCC 2 cut(s) 337, 426
PaqCI CACCTGC 1 cut(s) 252
PciSI GCTCTTC 1 cut(s) 4
PfeI GAWTC 4 cut(s) 175, 367, 506, 566
PflFI GACNNNGTC 1 cut(s) 296
PkrI GCNGC 2 cut(s) 60, 270
PleI GAGTC 1 cut(s) 481
PpsI GAGTC 1 cut(s) 481
PshAI GACNNNNGTC 1 cut(s) 472
Psp124BI GAGCTC 1 cut(s) 231
Psp1406I AACGTT 1 cut(s) 389
PspFI CCCAGC 1 cut(s) 273
PspN4I GGNNCC 2 cut(s) 337, 426
PspPI GGNCC 1 cut(s) 336
PsyI GACNNNGTC 1 cut(s) 296
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
SacI GAGCTC 1 cut(s) 231
SapI GCTCTTC 1 cut(s) 4
SaqAI TTAA 4 cut(s) 108, 257, 392, 574
SatI GCNGC 2 cut(s) 59, 269
Sau3AI GATC 3 cut(s) 26, 128, 310
Sau96I GGNCC 1 cut(s) 336
SchI GAGTC 1 cut(s) 482
ScrFI CCNGG 1 cut(s) 308
SduI GDGCHC 2 cut(s) 231, 358
SinI GGWCC 1 cut(s) 336
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
Sse9I AATT 1 cut(s) 110
SsiI CCGC 5 cut(s) 269, 304, 318, 359, 501
SspMI CTAG 2 cut(s) 102, 470
SstI GAGCTC 1 cut(s) 231
StyD4I CCNGG 1 cut(s) 306
StyI CCWWGG 1 cut(s) 525
TaaI ACNGT 2 cut(s) 151, 561
TaiI ACGT 2 cut(s) 42, 392
TaqI TCGA 2 cut(s) 21, 131
TasI AATT 1 cut(s) 110
TauI GCSGC 1 cut(s) 271
TfiI GAWTC 4 cut(s) 175, 367, 506, 566
Tru1I TTAA 4 cut(s) 108, 257, 392, 574
Tru9I TTAA 4 cut(s) 108, 257, 392, 574
TscAI CASTG 2 cut(s) 358, 566
TseI GCWGC 1 cut(s) 58
TspDTI ATGAA 1 cut(s) 62
TspGWI ACGGA 1 cut(s) 387
TspRI CASTG 2 cut(s) 358, 566
Tth111I GACNNNGTC 1 cut(s) 296
VpaK11BI GGWCC 1 cut(s) 336
XapI RAATTY 1 cut(s) 110
XmiI GTMKAC 1 cut(s) 550
XspI CTAG 2 cut(s) 102, 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.