Rroxscaffold_65G00445380

DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000065
OG0000098
Physical Location & Seq
Forward (+)
76944 .. 77499
556 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_65G00445380.1

Sequence Viewer

Length: 375 bp
ATGAACGCTTGGCTGCCACAAGCCGCTTATCCCCGTGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATCAGCCCGCCGAAGCAGGCTTTGGGTCCAAAAAGAGGGGCAGTGCCCCGCCTCCGATTCACGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTCGCCCGAAGGCTCCCACTTATACTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.83

Weight (kDa)

10.27

Isoelectric Point (pI)

57.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000098)

Species Orthologous Gene IDs
pyrus_communis pycom05g23460 pycom581g00100 pycom849g00040
rosa_multiflora Rmu_sc0019961.1_g000001
rosa_roxburghii Rroxscaffold_100G00451180 Rroxscaffold_102G00450890 Rroxscaffold_102G00450920 Rroxscaffold_103G00450530 Rroxscaffold_103G00450560 Rroxscaffold_104G00444830 Rroxscaffold_104G00444900 Rroxscaffold_105G00447100 Rroxscaffold_105G00447180 Rroxscaffold_107G00442470 Rroxscaffold_107G00442480 Rroxscaffold_107G00442520 Rroxscaffold_107G00442540 Rroxscaffold_107G00442560 Rroxscaffold_107G00442570 Rroxscaffold_107G00442600 Rroxscaffold_107G00442630 Rroxscaffold_107G00442650 Rroxscaffold_107G00442660 Rroxscaffold_108G00451480 Rroxscaffold_110G00451510 Rroxscaffold_111G00451550 Rroxscaffold_112G00451590 Rroxscaffold_113G00451630 Rroxscaffold_114G00451650 Rroxscaffold_116G00451710 Rroxscaffold_117G00451740 Rroxscaffold_117G00451750 Rroxscaffold_121G00451840 Rroxscaffold_122G00451860 Rroxscaffold_122G00451880 Rroxscaffold_123G00451920 Rroxscaffold_124G00451950 Rroxscaffold_128G00452040 Rroxscaffold_128G00452060 Rroxscaffold_12G00450600 Rroxscaffold_12G00450620 Rroxscaffold_131G00452110 Rroxscaffold_138G00452180 Rroxscaffold_13G00448630 Rroxscaffold_145G00452240 Rroxscaffold_14G00441930 Rroxscaffold_14G00441950 Rroxscaffold_14G00442050 Rroxscaffold_14G00442080 Rroxscaffold_15G00447500 Rroxscaffold_162G00450770 Rroxscaffold_16G00446200 Rroxscaffold_16G00446210 Rroxscaffold_16G00446240 Rroxscaffold_17G00435360 Rroxscaffold_17G00435410 Rroxscaffold_17G00435450 Rroxscaffold_17G00435480 Rroxscaffold_17G00435500 Rroxscaffold_17G00435600 Rroxscaffold_17G00435660 Rroxscaffold_17G00435680 Rroxscaffold_17G00435760 Rroxscaffold_17G00435780 Rroxscaffold_17G00435810 Rroxscaffold_17G00435840 Rroxscaffold_17G00435870 Rroxscaffold_18G00446030 Rroxscaffold_18G00446060 Rroxscaffold_18G00446130 Rroxscaffold_19G00448890 Rroxscaffold_19G00448920 Rroxscaffold_19G00448940 Rroxscaffold_19G00448970 Rroxscaffold_1G00000020 Rroxscaffold_1G00000050 Rroxscaffold_1G00000160 Rroxscaffold_20G00445060 Rroxscaffold_20G00445100 Rroxscaffold_20G00445130 Rroxscaffold_21G00439490 Rroxscaffold_21G00439560 Rroxscaffold_21G00439580 Rroxscaffold_21G00439620 Rroxscaffold_21G00439630 Rroxscaffold_22G00439910 Rroxscaffold_22G00439950 Rroxscaffold_23G00451020 Rroxscaffold_23G00451040 Rroxscaffold_23G00451070 Rroxscaffold_24G00444920 Rroxscaffold_24G00444950 Rroxscaffold_24G00445000 Rroxscaffold_25G00450200 Rroxscaffold_26G00447730 Rroxscaffold_27G00446570 Rroxscaffold_27G00446600 Rroxscaffold_28G00446830 Rroxscaffold_28G00446860 Rroxscaffold_28G00446910 Rroxscaffold_29G00441560 Rroxscaffold_29G00441570 Rroxscaffold_29G00441590 Rroxscaffold_29G00441630 Rroxscaffold_29G00441640 Rroxscaffold_29G00441670 Rroxscaffold_29G00441680 Rroxscaffold_29G00441860 Rroxscaffold_30G00449540 Rroxscaffold_30G00449570 Rroxscaffold_30G00449580 Rroxscaffold_31G00438120 Rroxscaffold_31G00438140 Rroxscaffold_31G00438180 Rroxscaffold_31G00438190 Rroxscaffold_31G00438220 Rroxscaffold_31G00438230 Rroxscaffold_32G00442740 Rroxscaffold_32G00442760 Rroxscaffold_33G00439670 Rroxscaffold_33G00439720 Rroxscaffold_33G00439740 Rroxscaffold_33G00439760 Rroxscaffold_33G00439820 Rroxscaffold_34G00443140 Rroxscaffold_34G00443200 Rroxscaffold_34G00443250 Rroxscaffold_34G00443370 Rroxscaffold_34G00443390 Rroxscaffold_35G00441050 Rroxscaffold_35G00441080 Rroxscaffold_35G00441090 Rroxscaffold_35G00441170 Rroxscaffold_35G00441190 Rroxscaffold_35G00441230 Rroxscaffold_36G00440100 Rroxscaffold_36G00440170 Rroxscaffold_37G00445170 Rroxscaffold_38G00444440 Rroxscaffold_38G00444500 Rroxscaffold_38G00444550 Rroxscaffold_39G00448200 Rroxscaffold_39G00448210 Rroxscaffold_40G00447650 Rroxscaffold_40G00447680 Rroxscaffold_40G00447700 Rroxscaffold_40G00447710 Rroxscaffold_41G00451110 Rroxscaffold_41G00451130 Rroxscaffold_42G00450430 Rroxscaffold_43G00449800 Rroxscaffold_43G00449860 Rroxscaffold_43G00449920 Rroxscaffold_43G00449930 Rroxscaffold_44G00440540 Rroxscaffold_44G00440580 Rroxscaffold_44G00440660 Rroxscaffold_45G00438900 Rroxscaffold_45G00438930 Rroxscaffold_45G00438950 Rroxscaffold_47G00444020 Rroxscaffold_47G00444060 Rroxscaffold_47G00444120 Rroxscaffold_48G00448450 Rroxscaffold_49G00438570 Rroxscaffold_49G00438650 Rroxscaffold_49G00438700 Rroxscaffold_4G00321080 Rroxscaffold_50G00444130 Rroxscaffold_50G00444200 Rroxscaffold_50G00444210 Rroxscaffold_50G00444330 Rroxscaffold_50G00444350 Rroxscaffold_51G00447840 Rroxscaffold_52G00439310 Rroxscaffold_52G00439390 Rroxscaffold_54G00443660 Rroxscaffold_55G00450020 Rroxscaffold_55G00450050 Rroxscaffold_55G00450060 Rroxscaffold_55G00450080 Rroxscaffold_55G00450090 Rroxscaffold_55G00450120 Rroxscaffold_57G00443070 Rroxscaffold_59G00442210 Rroxscaffold_59G00442220 Rroxscaffold_60G00448360 Rroxscaffold_60G00448370 Rroxscaffold_60G00448410 Rroxscaffold_61G00449990 Rroxscaffold_62G00438040 Rroxscaffold_62G00438060 Rroxscaffold_62G00438080 Rroxscaffold_63G00444410 Rroxscaffold_63G00444430 Rroxscaffold_64G00450670 Rroxscaffold_65G00445300 Rroxscaffold_65G00445340 Rroxscaffold_65G00445360 Rroxscaffold_65G00445380 Rroxscaffold_65G00445420 Rroxscaffold_66G00437660 Rroxscaffold_66G00437820 Rroxscaffold_66G00437840 Rroxscaffold_66G00437890 Rroxscaffold_67G00448140 Rroxscaffold_67G00448150 Rroxscaffold_68G00447010 Rroxscaffold_69G00446670 Rroxscaffold_69G00446710 Rroxscaffold_69G00446770 Rroxscaffold_6G00387820 Rroxscaffold_70G00446300 Rroxscaffold_70G00446340 Rroxscaffold_70G00446380 Rroxscaffold_71G00445590 Rroxscaffold_71G00445600 Rroxscaffold_71G00445630 Rroxscaffold_71G00445690 Rroxscaffold_71G00445720 Rroxscaffold_71G00445740 Rroxscaffold_71G00445770 Rroxscaffold_72G00449370 Rroxscaffold_72G00449410 Rroxscaffold_72G00449450 Rroxscaffold_73G00439000 Rroxscaffold_73G00439060 Rroxscaffold_73G00439160 Rroxscaffold_73G00439270 Rroxscaffold_74G00442920 Rroxscaffold_75G00447260 Rroxscaffold_75G00447290 Rroxscaffold_75G00447430 Rroxscaffold_76G00448540 Rroxscaffold_76G00448610 Rroxscaffold_77G00449150 Rroxscaffold_78G00449610 Rroxscaffold_79G00450210 Rroxscaffold_80G00450330 Rroxscaffold_80G00450350 Rroxscaffold_81G00450480 Rroxscaffold_83G00450980 Rroxscaffold_85G00451230 Rroxscaffold_86G00451270 Rroxscaffold_89G00451410 Rroxscaffold_90G00448760 Rroxscaffold_90G00448770 Rroxscaffold_90G00448820 Rroxscaffold_91G00443000 Rroxscaffold_91G00443060 Rroxscaffold_92G00446430 Rroxscaffold_93G00440830 Rroxscaffold_93G00440850 Rroxscaffold_93G00440860 Rroxscaffold_93G00440880 Rroxscaffold_93G00440910 Rroxscaffold_94G00445830 Rroxscaffold_94G00445910 Rroxscaffold_94G00445940 Rroxscaffold_94G00446020 Rroxscaffold_97G00442340 Rroxscaffold_97G00442390 Rroxscaffold_97G00442400 Rroxscaffold_98G00451350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 324
AccII CGCG 1 cut(s) 363
AciI CCGC 6 cut(s) 24, 44, 79, 93, 134, 275
AclI AACGTT 1 cut(s) 164
AclWI GGATC 1 cut(s) 93
AfiI CCNNNNNNNGG 2 cut(s) 120, 146
AjuI GAANNNNNNNTTGG 2 cut(s) 90, 122
AluBI AGCT 1 cut(s) 255
AluI AGCT 1 cut(s) 255
AlwI GGATC 1 cut(s) 93
ApeKI GCWGC 1 cut(s) 13
AspLEI GCGC 1 cut(s) 363
AspS9I GGNCC 1 cut(s) 111
AsuC2I CCSGG 1 cut(s) 83
AvaII GGWCC 1 cut(s) 111
BaeGI GKGCMC 1 cut(s) 133
BbsI GAAGAC 2 cut(s) 67, 257
BcnI CCSGG 1 cut(s) 83
BfaI CTAG 1 cut(s) 245
BisI GCNGC 3 cut(s) 14, 24, 44
BlsI GCNGC 3 cut(s) 15, 25, 45
Bme1390I CCNGG 1 cut(s) 83
Bme18I GGWCC 1 cut(s) 111
BmgT120I GGNCC 1 cut(s) 111
BmiI GGNNCC 2 cut(s) 112, 201
BmrFI CCNGG 1 cut(s) 83
BoxI GACNNNNGTC 1 cut(s) 247
BpiI GAAGAC 2 cut(s) 67, 257
BplI GAGNNNNNCTC 2 cut(s) 239, 271
BpuEI CTTGAG 1 cut(s) 206
BpuMI CCSGG 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 299
Bsc4I CCNNNNNNNGG 2 cut(s) 120, 146
BseDI CCNNGG 1 cut(s) 299
BseLI CCNNNNNNNGG 2 cut(s) 120, 146
BseSI GKGCMC 1 cut(s) 133
BseYI CCCAGC 1 cut(s) 48
Bsh1236I CGCG 1 cut(s) 363
BsiSI CCGG 1 cut(s) 83
BslFI GGGAC 1 cut(s) 344
BslI CCNNNNNNNGG 2 cut(s) 120, 146
BsmFI GGGAC 1 cut(s) 344
Bsp1286I GDGCHC 1 cut(s) 133
Bsp143I GATC 1 cut(s) 85
BspACI CCGC 6 cut(s) 24, 44, 79, 93, 134, 275
BspFNI CGCG 1 cut(s) 363
BspLI GGNNCC 2 cut(s) 112, 201
BspPI GGATC 1 cut(s) 93
BssECI CCNNGG 1 cut(s) 299
BssMI GATC 1 cut(s) 85
BssT1I CCWWGG 1 cut(s) 299
Bst4CI ACNGT 1 cut(s) 335
BstC8I GCNNGC 2 cut(s) 93, 103
BstFNI CGCG 1 cut(s) 363
BstHHI GCGC 1 cut(s) 363
BstKTI GATC 1 cut(s) 88
BstMBI GATC 1 cut(s) 85
BstMWI GCNNNNNNNGC 2 cut(s) 49, 283
BstPAI GACNNNNGTC 1 cut(s) 247
BstSCI CCNGG 1 cut(s) 81
BstSLI GKGCMC 1 cut(s) 133
BstUI CGCG 1 cut(s) 363
BstV2I GAAGAC 2 cut(s) 67, 257
BtsI GCAGTG 1 cut(s) 133
BtsIMutI CAGTG 2 cut(s) 133, 340
Cac8I GCNNGC 2 cut(s) 93, 103
CfoI GCGC 1 cut(s) 363
Cfr13I GGNCC 1 cut(s) 111
CseI GACGC 1 cut(s) 352
CviAII CATG 1 cut(s) 358
CviJI RGCY 9 cut(s) 13, 23, 52, 91, 105, 200, 255, 291, 304
CviKI_1 RGCY 9 cut(s) 13, 23, 52, 91, 105, 200, 255, 291, 304
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
EciI GGCGGA 1 cut(s) 68
Eco130I CCWWGG 1 cut(s) 299
Eco47I GGWCC 1 cut(s) 111
EcoT14I CCWWGG 1 cut(s) 299
ErhI CCWWGG 1 cut(s) 299
FaeI CATG 1 cut(s) 361
FaiI YATR 2 cut(s) 210, 359
FaqI GGGAC 1 cut(s) 344
FatI CATG 1 cut(s) 357
FauI CCCGC 3 cut(s) 100, 141, 282
FblI GTMKAC 1 cut(s) 324
Fnu4HI GCNGC 3 cut(s) 14, 24, 44
Fsp4HI GCNGC 3 cut(s) 14, 24, 44
FspBI CTAG 1 cut(s) 245
GlaI GCGC 1 cut(s) 362
GluI GCNGC 3 cut(s) 14, 24, 44
GsaI CCCAGC 1 cut(s) 52
HapII CCGG 1 cut(s) 83
HgaI GACGC 1 cut(s) 352
HhaI GCGC 1 cut(s) 363
Hin1II CATG 1 cut(s) 361
Hin6I GCGC 1 cut(s) 361
HinP1I GCGC 1 cut(s) 361
HinfI GANTC 4 cut(s) 142, 248, 280, 340
HpaII CCGG 1 cut(s) 83
Hpy166II GTNNAC 1 cut(s) 325
Hpy188I TCNGA 2 cut(s) 141, 242
Hpy8I GTNNAC 1 cut(s) 325
HpyAV CCTTC 1 cut(s) 190
HpyCH4III ACNGT 1 cut(s) 335
HpyCH4IV ACGT 1 cut(s) 164
HpyF10VI GCNNNNNNNGC 2 cut(s) 49, 283
HpySE526I ACGT 1 cut(s) 164
Hsp92II CATG 1 cut(s) 361
HspAI GCGC 1 cut(s) 361
Kzo9I GATC 1 cut(s) 85
LmnI GCTCC 1 cut(s) 205
LpnPI CCDG 7 cut(s) 62, 78, 87, 96, 246, 301, 313
MaeI CTAG 1 cut(s) 245
MaeII ACGT 1 cut(s) 164
MaeIII GTNAC 1 cut(s) 364
MalI GATC 1 cut(s) 87
MboI GATC 1 cut(s) 85
MboII GAAGA 2 cut(s) 67, 257
MhlI GDGCHC 1 cut(s) 133
MluCI AATT 1 cut(s) 370
MlyI GAGTC 1 cut(s) 257
MmeI TCCRAC 1 cut(s) 220
MnlI CCTC 3 cut(s) 114, 147, 228
MseI TTAA 2 cut(s) 167, 348
MspA1I CMGCKG 1 cut(s) 277
MspI CCGG 1 cut(s) 83
MspR9I CCNGG 1 cut(s) 83
MvnI CGCG 1 cut(s) 363
MwoI GCNNNNNNNGC 2 cut(s) 49, 283
NciI CCSGG 1 cut(s) 83
NdeII GATC 1 cut(s) 85
NlaIII CATG 1 cut(s) 361
NlaIV GGNNCC 2 cut(s) 112, 201
NmuCI GTSAC 1 cut(s) 364
PfeI GAWTC 3 cut(s) 142, 280, 340
PflFI GACNNNGTC 1 cut(s) 71
PkrI GCNGC 3 cut(s) 15, 25, 45
PleI GAGTC 1 cut(s) 256
PpsI GAGTC 1 cut(s) 256
PshAI GACNNNNGTC 1 cut(s) 247
Psp1406I AACGTT 1 cut(s) 164
PspFI CCCAGC 1 cut(s) 48
PspN4I GGNNCC 2 cut(s) 112, 201
PspPI GGNCC 1 cut(s) 111
PsyI GACNNNGTC 1 cut(s) 71
SaqAI TTAA 2 cut(s) 167, 348
SatI GCNGC 3 cut(s) 14, 24, 44
Sau3AI GATC 1 cut(s) 85
Sau96I GGNCC 1 cut(s) 111
SchI GAGTC 1 cut(s) 257
ScrFI CCNGG 1 cut(s) 83
SduI GDGCHC 1 cut(s) 133
SetI ASST 5 cut(s) 67, 167, 220, 257, 265
SinI GGWCC 1 cut(s) 111
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 1 cut(s) 370
SsiI CCGC 6 cut(s) 24, 44, 79, 93, 134, 275
SspMI CTAG 1 cut(s) 245
StyD4I CCNGG 1 cut(s) 81
StyI CCWWGG 1 cut(s) 299
TaaI ACNGT 1 cut(s) 335
TaiI ACGT 1 cut(s) 167
TasI AATT 1 cut(s) 370
TauI GCSGC 2 cut(s) 26, 46
TfiI GAWTC 3 cut(s) 142, 280, 340
Tru1I TTAA 2 cut(s) 167, 348
Tru9I TTAA 2 cut(s) 167, 348
TscAI CASTG 2 cut(s) 133, 340
TseFI GTSAC 1 cut(s) 364
TseI GCWGC 1 cut(s) 13
Tsp45I GTSAC 1 cut(s) 364
TspDTI ATGAA 2 cut(s) 17, 346
TspGWI ACGGA 1 cut(s) 162
TspRI CASTG 2 cut(s) 133, 340
Tth111I GACNNNGTC 1 cut(s) 71
VpaK11BI GGWCC 1 cut(s) 111
XmiI GTMKAC 1 cut(s) 324
XspI CTAG 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.