Rroxscaffold_121G00451840

DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000121
OG0000098
Physical Location & Seq
Forward (+)
1827 .. 3137
1311 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_121G00451840.1

Sequence Viewer

Length: 831 bp
ATGTCTTCCGCCGGATCAGCCCGCCGGCTGTGCTTTGGGTCCAAAAAGAGGGGCAGTGCCCCGCCTCCGATTCACGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTCGCCCGAAGGCTCCCACTTATACTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGTCTTCTTTCCCCGCCGATTCTCGCCAAGCCCGTTCCCTTGGCCGTGGTCGTTCACCTTGGAGACCGATGCGGTTATGAGTACGACCGGCGTGAATGGCACTCGGTCCTCCGGATTTTCAAGGGCCGCCGGGGCGCACGGACACCACGCGACGTGCGGTGCTCTTCCGCCGCCGGACCCTACCTCCGCCGAGCCGTTTCCGTGGTGGGCAGGCTGTTAAACGAAAAGATAACTCTTCCCGAGGCCCCCGCCGACGTCTCCGACTCCCTAACGTTGCCGTCAACCACCACGTCCCGGTTCGGGAATTTTAACCCGATTCCCTTTTCGAAGTTCGCGCGAGACGCGCTATCGACGGGTTACCCGCTCTTAGGATCGACTAACCCATGTGCAAGTGCCGTTCACATGGAACCTTTCCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCCGCACCGACGGCCGCTCCGCCGGGCTCACGCCCTGTGTTTTGCAGCGACCGCCGCGCCCTCCTACTCATCGGGGCTCGGCACTTGCCCCGACGGCCGGGTATAGGTCACGCGCTTAAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

276

Amino Acids

29.97

Weight (kDa)

10.81

Isoelectric Point (pI)

50.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000098)

Species Orthologous Gene IDs
pyrus_communis pycom05g23460 pycom581g00100 pycom849g00040
rosa_multiflora Rmu_sc0019961.1_g000001
rosa_roxburghii Rroxscaffold_100G00451180 Rroxscaffold_102G00450890 Rroxscaffold_102G00450920 Rroxscaffold_103G00450530 Rroxscaffold_103G00450560 Rroxscaffold_104G00444830 Rroxscaffold_104G00444900 Rroxscaffold_105G00447100 Rroxscaffold_105G00447180 Rroxscaffold_107G00442470 Rroxscaffold_107G00442480 Rroxscaffold_107G00442520 Rroxscaffold_107G00442540 Rroxscaffold_107G00442560 Rroxscaffold_107G00442570 Rroxscaffold_107G00442600 Rroxscaffold_107G00442630 Rroxscaffold_107G00442650 Rroxscaffold_107G00442660 Rroxscaffold_108G00451480 Rroxscaffold_110G00451510 Rroxscaffold_111G00451550 Rroxscaffold_112G00451590 Rroxscaffold_113G00451630 Rroxscaffold_114G00451650 Rroxscaffold_116G00451710 Rroxscaffold_117G00451740 Rroxscaffold_117G00451750 Rroxscaffold_121G00451840 Rroxscaffold_122G00451860 Rroxscaffold_122G00451880 Rroxscaffold_123G00451920 Rroxscaffold_124G00451950 Rroxscaffold_128G00452040 Rroxscaffold_128G00452060 Rroxscaffold_12G00450600 Rroxscaffold_12G00450620 Rroxscaffold_131G00452110 Rroxscaffold_138G00452180 Rroxscaffold_13G00448630 Rroxscaffold_145G00452240 Rroxscaffold_14G00441930 Rroxscaffold_14G00441950 Rroxscaffold_14G00442050 Rroxscaffold_14G00442080 Rroxscaffold_15G00447500 Rroxscaffold_162G00450770 Rroxscaffold_16G00446200 Rroxscaffold_16G00446210 Rroxscaffold_16G00446240 Rroxscaffold_17G00435360 Rroxscaffold_17G00435410 Rroxscaffold_17G00435450 Rroxscaffold_17G00435480 Rroxscaffold_17G00435500 Rroxscaffold_17G00435600 Rroxscaffold_17G00435660 Rroxscaffold_17G00435680 Rroxscaffold_17G00435760 Rroxscaffold_17G00435780 Rroxscaffold_17G00435810 Rroxscaffold_17G00435840 Rroxscaffold_17G00435870 Rroxscaffold_18G00446030 Rroxscaffold_18G00446060 Rroxscaffold_18G00446130 Rroxscaffold_19G00448890 Rroxscaffold_19G00448920 Rroxscaffold_19G00448940 Rroxscaffold_19G00448970 Rroxscaffold_1G00000020 Rroxscaffold_1G00000050 Rroxscaffold_1G00000160 Rroxscaffold_20G00445060 Rroxscaffold_20G00445100 Rroxscaffold_20G00445130 Rroxscaffold_21G00439490 Rroxscaffold_21G00439560 Rroxscaffold_21G00439580 Rroxscaffold_21G00439620 Rroxscaffold_21G00439630 Rroxscaffold_22G00439910 Rroxscaffold_22G00439950 Rroxscaffold_23G00451020 Rroxscaffold_23G00451040 Rroxscaffold_23G00451070 Rroxscaffold_24G00444920 Rroxscaffold_24G00444950 Rroxscaffold_24G00445000 Rroxscaffold_25G00450200 Rroxscaffold_26G00447730 Rroxscaffold_27G00446570 Rroxscaffold_27G00446600 Rroxscaffold_28G00446830 Rroxscaffold_28G00446860 Rroxscaffold_28G00446910 Rroxscaffold_29G00441560 Rroxscaffold_29G00441570 Rroxscaffold_29G00441590 Rroxscaffold_29G00441630 Rroxscaffold_29G00441640 Rroxscaffold_29G00441670 Rroxscaffold_29G00441680 Rroxscaffold_29G00441860 Rroxscaffold_30G00449540 Rroxscaffold_30G00449570 Rroxscaffold_30G00449580 Rroxscaffold_31G00438120 Rroxscaffold_31G00438140 Rroxscaffold_31G00438180 Rroxscaffold_31G00438190 Rroxscaffold_31G00438220 Rroxscaffold_31G00438230 Rroxscaffold_32G00442740 Rroxscaffold_32G00442760 Rroxscaffold_33G00439670 Rroxscaffold_33G00439720 Rroxscaffold_33G00439740 Rroxscaffold_33G00439760 Rroxscaffold_33G00439820 Rroxscaffold_34G00443140 Rroxscaffold_34G00443200 Rroxscaffold_34G00443250 Rroxscaffold_34G00443370 Rroxscaffold_34G00443390 Rroxscaffold_35G00441050 Rroxscaffold_35G00441080 Rroxscaffold_35G00441090 Rroxscaffold_35G00441170 Rroxscaffold_35G00441190 Rroxscaffold_35G00441230 Rroxscaffold_36G00440100 Rroxscaffold_36G00440170 Rroxscaffold_37G00445170 Rroxscaffold_38G00444440 Rroxscaffold_38G00444500 Rroxscaffold_38G00444550 Rroxscaffold_39G00448200 Rroxscaffold_39G00448210 Rroxscaffold_40G00447650 Rroxscaffold_40G00447680 Rroxscaffold_40G00447700 Rroxscaffold_40G00447710 Rroxscaffold_41G00451110 Rroxscaffold_41G00451130 Rroxscaffold_42G00450430 Rroxscaffold_43G00449800 Rroxscaffold_43G00449860 Rroxscaffold_43G00449920 Rroxscaffold_43G00449930 Rroxscaffold_44G00440540 Rroxscaffold_44G00440580 Rroxscaffold_44G00440660 Rroxscaffold_45G00438900 Rroxscaffold_45G00438930 Rroxscaffold_45G00438950 Rroxscaffold_47G00444020 Rroxscaffold_47G00444060 Rroxscaffold_47G00444120 Rroxscaffold_48G00448450 Rroxscaffold_49G00438570 Rroxscaffold_49G00438650 Rroxscaffold_49G00438700 Rroxscaffold_4G00321080 Rroxscaffold_50G00444130 Rroxscaffold_50G00444200 Rroxscaffold_50G00444210 Rroxscaffold_50G00444330 Rroxscaffold_50G00444350 Rroxscaffold_51G00447840 Rroxscaffold_52G00439310 Rroxscaffold_52G00439390 Rroxscaffold_54G00443660 Rroxscaffold_55G00450020 Rroxscaffold_55G00450050 Rroxscaffold_55G00450060 Rroxscaffold_55G00450080 Rroxscaffold_55G00450090 Rroxscaffold_55G00450120 Rroxscaffold_57G00443070 Rroxscaffold_59G00442210 Rroxscaffold_59G00442220 Rroxscaffold_60G00448360 Rroxscaffold_60G00448370 Rroxscaffold_60G00448410 Rroxscaffold_61G00449990 Rroxscaffold_62G00438040 Rroxscaffold_62G00438060 Rroxscaffold_62G00438080 Rroxscaffold_63G00444410 Rroxscaffold_63G00444430 Rroxscaffold_64G00450670 Rroxscaffold_65G00445300 Rroxscaffold_65G00445340 Rroxscaffold_65G00445360 Rroxscaffold_65G00445380 Rroxscaffold_65G00445420 Rroxscaffold_66G00437660 Rroxscaffold_66G00437820 Rroxscaffold_66G00437840 Rroxscaffold_66G00437890 Rroxscaffold_67G00448140 Rroxscaffold_67G00448150 Rroxscaffold_68G00447010 Rroxscaffold_69G00446670 Rroxscaffold_69G00446710 Rroxscaffold_69G00446770 Rroxscaffold_6G00387820 Rroxscaffold_70G00446300 Rroxscaffold_70G00446340 Rroxscaffold_70G00446380 Rroxscaffold_71G00445590 Rroxscaffold_71G00445600 Rroxscaffold_71G00445630 Rroxscaffold_71G00445690 Rroxscaffold_71G00445720 Rroxscaffold_71G00445740 Rroxscaffold_71G00445770 Rroxscaffold_72G00449370 Rroxscaffold_72G00449410 Rroxscaffold_72G00449450 Rroxscaffold_73G00439000 Rroxscaffold_73G00439060 Rroxscaffold_73G00439160 Rroxscaffold_73G00439270 Rroxscaffold_74G00442920 Rroxscaffold_75G00447260 Rroxscaffold_75G00447290 Rroxscaffold_75G00447430 Rroxscaffold_76G00448540 Rroxscaffold_76G00448610 Rroxscaffold_77G00449150 Rroxscaffold_78G00449610 Rroxscaffold_79G00450210 Rroxscaffold_80G00450330 Rroxscaffold_80G00450350 Rroxscaffold_81G00450480 Rroxscaffold_83G00450980 Rroxscaffold_85G00451230 Rroxscaffold_86G00451270 Rroxscaffold_89G00451410 Rroxscaffold_90G00448760 Rroxscaffold_90G00448770 Rroxscaffold_90G00448820 Rroxscaffold_91G00443000 Rroxscaffold_91G00443060 Rroxscaffold_92G00446430 Rroxscaffold_93G00440830 Rroxscaffold_93G00440850 Rroxscaffold_93G00440860 Rroxscaffold_93G00440880 Rroxscaffold_93G00440910 Rroxscaffold_94G00445830 Rroxscaffold_94G00445910 Rroxscaffold_94G00445940 Rroxscaffold_94G00446020 Rroxscaffold_97G00442340 Rroxscaffold_97G00442390 Rroxscaffold_97G00442400 Rroxscaffold_98G00451350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 797
AatII GACGTC 1 cut(s) 447
Acc36I ACCTGC 1 cut(s) 797
AccBSI CCGCTC 2 cut(s) 553, 671
AccII CGCG 6 cut(s) 339, 524, 526, 533, 711, 767
AccIII TCCGGA 1 cut(s) 300
AclI AACGTT 2 cut(s) 92, 461
AclWI GGATC 3 cut(s) 22, 568, 648
AcoI YGGCCR 3 cut(s) 231, 666, 749
AcsI RAATTY 1 cut(s) 493
AcyI GRCGYC 1 cut(s) 444
AfaI GTAC 1 cut(s) 272
AfiI CCNNNNNNNGG 8 cut(s) 48, 74, 483, 489, 557, 751, 758, 788
AflII CTTAAG 1 cut(s) 770
AgsI TTSAA 3 cut(s) 310, 618, 632
AjiI CACGTC 2 cut(s) 343, 480
AluBI AGCT 1 cut(s) 183
AluI AGCT 1 cut(s) 183
Alw21I GWGCWC 1 cut(s) 353
Alw26I GTCTC 3 cut(s) 246, 451, 522
AlwI GGATC 3 cut(s) 22, 568, 648
Ama87I CYCGRG 1 cut(s) 428
Aor13HI TCCGGA 1 cut(s) 300
AoxI GGCC 6 cut(s) 231, 313, 432, 611, 666, 749
ApeKI GCWGC 1 cut(s) 699
ApoI RAATTY 1 cut(s) 493
AspLEI GCGC 6 cut(s) 326, 526, 535, 713, 769, 777
AspS9I GGNCC 5 cut(s) 39, 295, 313, 365, 433
AsuC2I CCSGG 4 cut(s) 320, 484, 678, 753
AsuHPI GGTGA 2 cut(s) 236, 821
AsuII TTCGAA 1 cut(s) 515
AvaI CYCGRG 1 cut(s) 428
AvaII GGWCC 3 cut(s) 39, 295, 365
BaeGI GKGCMC 1 cut(s) 61
BanII GRGCYC 2 cut(s) 683, 733
BbsI GAAGAC 1 cut(s) 185
Bbv12I GWGCWC 1 cut(s) 353
BbvI GCAGC 1 cut(s) 711
BccI CCATC 1 cut(s) 786
BceAI ACGGC 6 cut(s) 218, 368, 451, 569, 681, 764
BcnI CCSGG 4 cut(s) 320, 484, 678, 753
BcoDI GTCTC 3 cut(s) 246, 451, 522
BfaI CTAG 2 cut(s) 173, 794
BfoI RGCGCY 1 cut(s) 778
BfrI CTTAAG 1 cut(s) 770
BfuAI ACCTGC 1 cut(s) 797
BglI GCCNNNNNGGC 2 cut(s) 321, 748
BisI GCNGC 5 cut(s) 316, 360, 669, 700, 709
BlsI GCNGC 5 cut(s) 317, 361, 670, 701, 710
Bme1390I CCNGG 4 cut(s) 320, 484, 678, 753
Bme18I GGWCC 3 cut(s) 39, 295, 365
BmeT110I CYCGRG 1 cut(s) 428
BmgBI CACGTC 2 cut(s) 343, 480
BmgT120I GGNCC 5 cut(s) 39, 295, 313, 365, 433
BmiI GGNNCC 5 cut(s) 40, 129, 367, 435, 597
BmrFI CCNGG 4 cut(s) 320, 484, 678, 753
BmsI GCATC 1 cut(s) 248
BoxI GACNNNNGTC 1 cut(s) 175
BpiI GAAGAC 1 cut(s) 185
BplI GAGNNNNNCTC 2 cut(s) 167, 199
Bpu14I TTCGAA 1 cut(s) 515
BpuEI CTTGAG 1 cut(s) 134
BpuMI CCSGG 4 cut(s) 320, 484, 678, 753
BsaHI GRCGYC 1 cut(s) 444
BsaI GGTCTC 1 cut(s) 246
BsaJI CCNNGG 6 cut(s) 228, 234, 247, 319, 390, 429
BsaWI WCCGGW 1 cut(s) 300
BsaXI ACNNNNNCTCC 4 cut(s) 357, 387, 655, 685
Bsc4I CCNNNNNNNGG 8 cut(s) 48, 74, 483, 489, 557, 751, 758, 788
Bse118I RCCGGY 2 cut(s) 24, 276
BseAI TCCGGA 1 cut(s) 300
BseDI CCNNGG 6 cut(s) 228, 234, 247, 319, 390, 429
BseGI GGATG 1 cut(s) 778
BseLI CCNNNNNNNGG 8 cut(s) 48, 74, 483, 489, 557, 751, 758, 788
BseSI GKGCMC 1 cut(s) 61
BseX3I CGGCCG 2 cut(s) 666, 749
BseXI GCAGC 1 cut(s) 711
Bsh1236I CGCG 6 cut(s) 339, 524, 526, 533, 711, 767
Bsh1285I CGRYCG 4 cut(s) 277, 669, 706, 752
BshFI GGCC 6 cut(s) 233, 315, 434, 613, 668, 751
BsiEI CGRYCG 4 cut(s) 277, 669, 706, 752
BsiHKAI GWGCWC 1 cut(s) 353
BsiHKCI CYCGRG 1 cut(s) 428
BsiSI CCGG 9 cut(s) 12, 25, 277, 301, 319, 363, 484, 677, 752
BslFI GGGAC 1 cut(s) 466
BslI CCNNNNNNNGG 8 cut(s) 48, 74, 483, 489, 557, 751, 758, 788
BsmAI GTCTC 3 cut(s) 246, 451, 522
BsmBI CGTCTC 2 cut(s) 451, 522
BsmFI GGGAC 1 cut(s) 466
BsnI GGCC 6 cut(s) 233, 315, 434, 613, 668, 751
Bso31I GGTCTC 1 cut(s) 246
BsoBI CYCGRG 1 cut(s) 428
Bsp119I TTCGAA 1 cut(s) 515
Bsp1286I GDGCHC 4 cut(s) 61, 353, 683, 733
Bsp13I TCCGGA 1 cut(s) 300
Bsp143I GATC 3 cut(s) 14, 560, 653
BspANI GGCC 6 cut(s) 233, 315, 434, 613, 668, 751
BspEI TCCGGA 1 cut(s) 300
BspFNI CGCG 6 cut(s) 339, 524, 526, 533, 711, 767
BspLI GGNNCC 5 cut(s) 40, 129, 367, 435, 597
BspMI ACCTGC 1 cut(s) 797
BspPI GGATC 3 cut(s) 22, 568, 648
BspQI GCTCTTC 1 cut(s) 358
BspT104I TTCGAA 1 cut(s) 515
BspTI CTTAAG 1 cut(s) 770
BspTNI GGTCTC 1 cut(s) 246
BsrBI CCGCTC 2 cut(s) 553, 671
BsrFI RCCGGY 2 cut(s) 24, 276
BssAI RCCGGY 2 cut(s) 24, 276
BssECI CCNNGG 6 cut(s) 228, 234, 247, 319, 390, 429
BssMI GATC 3 cut(s) 14, 560, 653
BssNI GRCGYC 1 cut(s) 444
BssT1I CCWWGG 2 cut(s) 228, 247
Bst6I CTCTTC 3 cut(s) 358, 429, 612
BstACI GRCGYC 1 cut(s) 444
BstAFI CTTAAG 1 cut(s) 770
BstBI TTCGAA 1 cut(s) 515
BstC8I GCNNGC 3 cut(s) 22, 26, 401
BstDEI CTNAG 2 cut(s) 556, 828
BstDSI CCRYGG 2 cut(s) 234, 390
BstEII GGTNACC 1 cut(s) 545
BstF5I GGATG 1 cut(s) 778
BstFNI CGCG 6 cut(s) 339, 524, 526, 533, 711, 767
BstH2I RGCGCY 1 cut(s) 778
BstHHI GCGC 6 cut(s) 326, 526, 535, 713, 769, 777
BstKTI GATC 3 cut(s) 17, 563, 656
BstMAI GTCTC 3 cut(s) 246, 451, 522
BstMBI GATC 3 cut(s) 14, 560, 653
BstMCI CGRYCG 4 cut(s) 277, 669, 706, 752
BstPAI GACNNNNGTC 1 cut(s) 175
BstPI GGTNACC 1 cut(s) 545
BstSCI CCNGG 4 cut(s) 318, 482, 676, 751
BstSLI GKGCMC 1 cut(s) 61
BstUI CGCG 6 cut(s) 339, 524, 526, 533, 711, 767
BstV1I GCAGC 1 cut(s) 711
BstV2I GAAGAC 1 cut(s) 185
BstX2I RGATCY 1 cut(s) 653
BstYI RGATCY 1 cut(s) 653
BstZI CGGCCG 2 cut(s) 666, 749
BsuRI GGCC 6 cut(s) 233, 315, 434, 613, 668, 751
BtgI CCRYGG 2 cut(s) 234, 390
BtrI CACGTC 2 cut(s) 343, 480
BtsCI GGATG 1 cut(s) 778
BtsI GCAGTG 1 cut(s) 61
BtsIMutI CAGTG 1 cut(s) 61
BveI ACCTGC 1 cut(s) 797
Cac8I GCNNGC 3 cut(s) 22, 26, 401
CfoI GCGC 6 cut(s) 326, 526, 535, 713, 769, 777
Cfr10I RCCGGY 2 cut(s) 24, 276
Cfr13I GGNCC 5 cut(s) 39, 295, 313, 365, 433
CseI GACGC 1 cut(s) 539
Csp6I GTAC 1 cut(s) 271
CviAII CATG 2 cut(s) 573, 592
CviQI GTAC 1 cut(s) 271
DdeI CTNAG 2 cut(s) 556, 828
DpnI GATC 3 cut(s) 16, 562, 655
DpnII GATC 3 cut(s) 14, 560, 653
EaeI YGGCCR 3 cut(s) 231, 666, 749
EagI CGGCCG 2 cut(s) 666, 749
Eam1104I CTCTTC 3 cut(s) 358, 429, 612
EarI CTCTTC 3 cut(s) 358, 429, 612
EciI GGCGGA 3 cut(s) 346, 365, 663
EclXI CGGCCG 2 cut(s) 666, 749
Eco130I CCWWGG 2 cut(s) 228, 247
Eco24I GRGCYC 2 cut(s) 683, 733
Eco31I GGTCTC 1 cut(s) 246
Eco47I GGWCC 3 cut(s) 39, 295, 365
Eco52I CGGCCG 2 cut(s) 666, 749
Eco88I CYCGRG 1 cut(s) 428
Eco91I GGTNACC 1 cut(s) 545
EcoO109I RGGNCCY 1 cut(s) 433
EcoO65I GGTNACC 1 cut(s) 545
EcoT14I CCWWGG 2 cut(s) 228, 247
EcoT38I GRGCYC 2 cut(s) 683, 733
ErhI CCWWGG 2 cut(s) 228, 247
Esp3I CGTCTC 2 cut(s) 451, 522
FaeI CATG 2 cut(s) 576, 595
FaiI YATR 5 cut(s) 138, 267, 574, 593, 758
FaqI GGGAC 1 cut(s) 466
FatI CATG 2 cut(s) 572, 591
FauI CCCGC 5 cut(s) 29, 69, 210, 445, 558
Fnu4HI GCNGC 5 cut(s) 316, 360, 669, 700, 709
FokI GGATG 1 cut(s) 765
FriOI GRGCYC 2 cut(s) 683, 733
Fsp4HI GCNGC 5 cut(s) 316, 360, 669, 700, 709
FspBI CTAG 2 cut(s) 173, 794
GlaI GCGC 6 cut(s) 325, 525, 534, 712, 768, 776
GluI GCNGC 5 cut(s) 316, 360, 669, 700, 709
HaeII RGCGCY 1 cut(s) 778
HaeIII GGCC 6 cut(s) 233, 315, 434, 613, 668, 751
HapII CCGG 9 cut(s) 12, 25, 277, 301, 319, 363, 484, 677, 752
HgaI GACGC 1 cut(s) 539
HhaI GCGC 6 cut(s) 326, 526, 535, 713, 769, 777
Hin1I GRCGYC 1 cut(s) 444
Hin1II CATG 2 cut(s) 576, 595
Hin6I GCGC 6 cut(s) 324, 524, 533, 711, 767, 775
HinP1I GCGC 6 cut(s) 324, 524, 533, 711, 767, 775
HincII GTYRAC 1 cut(s) 471
HindII GTYRAC 1 cut(s) 471
HinfI GANTC 6 cut(s) 70, 176, 208, 452, 505, 800
HpaII CCGG 9 cut(s) 12, 25, 277, 301, 319, 363, 484, 677, 752
HphI GGTGA 2 cut(s) 236, 821
Hpy166II GTNNAC 3 cut(s) 244, 471, 589
Hpy188I TCNGA 3 cut(s) 69, 170, 451
Hpy188III TCNNGA 3 cut(s) 301, 428, 490
Hpy8I GTNNAC 3 cut(s) 244, 471, 589
Hpy99I CGWCG 5 cut(s) 344, 446, 544, 667, 750
HpyAV CCTTC 2 cut(s) 118, 624
HpyCH4IV ACGT 5 cut(s) 92, 342, 444, 461, 479
HpyCH4V TGCA 2 cut(s) 578, 699
HpyF3I CTNAG 2 cut(s) 556, 828
HpySE526I ACGT 5 cut(s) 92, 342, 444, 461, 479
Hsp92I GRCGYC 1 cut(s) 444
Hsp92II CATG 2 cut(s) 576, 595
HspAI GCGC 6 cut(s) 324, 524, 533, 711, 767, 775
Kpn2I TCCGGA 1 cut(s) 300
KroI GCCGGC 1 cut(s) 24
KroNI GCCGGC 1 cut(s) 26
Kzo9I GATC 3 cut(s) 14, 560, 653
LguI GCTCTTC 1 cut(s) 358
LmnI GCTCC 2 cut(s) 133, 676
Lsp1109I GCAGC 1 cut(s) 711
LweI GCATC 1 cut(s) 248
MaeI CTAG 2 cut(s) 173, 794
MaeII ACGT 5 cut(s) 92, 342, 444, 461, 479
MaeIII GTNAC 3 cut(s) 545, 761, 816
MalI GATC 3 cut(s) 16, 562, 655
MbiI CCGCTC 2 cut(s) 553, 671
MboI GATC 3 cut(s) 14, 560, 653
MboII GAAGA 4 cut(s) 185, 345, 416, 599
MflI RGATCY 1 cut(s) 653
MhlI GDGCHC 4 cut(s) 61, 353, 683, 733
MluCI AATT 1 cut(s) 493
MlyI GAGTC 2 cut(s) 185, 446
MmeI TCCRAC 2 cut(s) 148, 474
MnlI CCTC 8 cut(s) 42, 75, 156, 308, 383, 424, 615, 725
MroI TCCGGA 1 cut(s) 300
MroNI GCCGGC 1 cut(s) 24
MseI TTAA 4 cut(s) 95, 407, 498, 771
MspCI CTTAAG 1 cut(s) 770
MspI CCGG 9 cut(s) 12, 25, 277, 301, 319, 363, 484, 677, 752
MspR9I CCNGG 4 cut(s) 320, 484, 678, 753
MvnI CGCG 6 cut(s) 339, 524, 526, 533, 711, 767
NaeI GCCGGC 1 cut(s) 26
NciI CCSGG 4 cut(s) 320, 484, 678, 753
NdeII GATC 3 cut(s) 14, 560, 653
NgoMIV GCCGGC 1 cut(s) 24
NlaIII CATG 2 cut(s) 576, 595
NlaIV GGNNCC 5 cut(s) 40, 129, 367, 435, 597
NmeAIII GCCGAG 2 cut(s) 404, 712
NmuCI GTSAC 1 cut(s) 761
NspV TTCGAA 1 cut(s) 515
PaqCI CACCTGC 1 cut(s) 797
PciSI GCTCTTC 1 cut(s) 358
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PdiI GCCGGC 1 cut(s) 26
PfeI GAWTC 4 cut(s) 70, 208, 505, 800
PkrI GCNGC 5 cut(s) 317, 361, 670, 701, 710
PleI GAGTC 2 cut(s) 184, 446
PpsI GAGTC 2 cut(s) 184, 446
PshAI GACNNNNGTC 1 cut(s) 175
Psp1406I AACGTT 2 cut(s) 92, 461
PspEI GGTNACC 1 cut(s) 545
PspN4I GGNNCC 5 cut(s) 40, 129, 367, 435, 597
PspPI GGNCC 5 cut(s) 39, 295, 313, 365, 433
PsuI RGATCY 1 cut(s) 653
RsaI GTAC 1 cut(s) 272
RsaNI GTAC 1 cut(s) 271
SapI GCTCTTC 1 cut(s) 358
SaqAI TTAA 4 cut(s) 95, 407, 498, 771
SatI GCNGC 5 cut(s) 316, 360, 669, 700, 709
Sau3AI GATC 3 cut(s) 14, 560, 653
Sau96I GGNCC 5 cut(s) 39, 295, 313, 365, 433
SchI GAGTC 2 cut(s) 185, 446
ScrFI CCNGG 4 cut(s) 320, 484, 678, 753
SduI GDGCHC 4 cut(s) 61, 353, 683, 733
SfaNI GCATC 1 cut(s) 248
SfuI TTCGAA 1 cut(s) 515
SinI GGWCC 3 cut(s) 39, 295, 365
SmlI CTYRAG 2 cut(s) 149, 770
SmoI CTYRAG 2 cut(s) 149, 770
Sse9I AATT 1 cut(s) 493
SspI AATATT 1 cut(s) 635
SspMI CTAG 2 cut(s) 173, 794
StyD4I CCNGG 4 cut(s) 318, 482, 676, 751
StyI CCWWGG 2 cut(s) 228, 247
TaiI ACGT 5 cut(s) 95, 345, 447, 464, 482
TaqI TCGA 3 cut(s) 515, 539, 563
TaqII GACCGA 2 cut(s) 270, 283
TasI AATT 1 cut(s) 493
TauI GCSGC 4 cut(s) 318, 362, 671, 711
TfiI GAWTC 4 cut(s) 70, 208, 505, 800
Tru1I TTAA 4 cut(s) 95, 407, 498, 771
Tru9I TTAA 4 cut(s) 95, 407, 498, 771
TscAI CASTG 1 cut(s) 61
TseFI GTSAC 1 cut(s) 761
TseI GCWGC 1 cut(s) 699
Tsp45I GTSAC 1 cut(s) 761
TspGWI ACGGA 3 cut(s) 90, 343, 379
TspRI CASTG 1 cut(s) 61
Vha464I CTTAAG 1 cut(s) 770
VpaK11BI GGWCC 3 cut(s) 39, 295, 365
XapI RAATTY 1 cut(s) 493
XspI CTAG 2 cut(s) 173, 794
ZraI GACGTC 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.