Rroxscaffold_19G00448920

DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000019
OG0000098
Physical Location & Seq
Forward (+)
25659 .. 30952
5294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_19G00448920.1

Sequence Viewer

Length: 1158 bp
ATGTCTTCCGCCCGGATCAGCCCGCCGAAGCAGTGCTTTGGGTCCAAAAAGAGGGGCAGTGCCCCGCCTCCGATTCACGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTCGCCCGAAGGCTCCCACTTATACTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGTCTTCTTTCCCCGCCGATTCTCGCCAAGCCCGTTCCCTTGGCCGTGGTTTCGCCGGATAGTAGACAGGGACATCGGATTCCCCTTGTCCGTACCAGTTCCGAGTCGACCGTTGAACGCCCGGGAAAGCCCCCGAAGGAGCGTTCCCAGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGCGGAAGCAGCTCGAGCAGTTCACCGACAGCCGACGGGCTGTTCACCTTGGAGACCCTGATGCGGTTATGAGTACGACCGGCGTGAATGGCACTCGGTCCTCCGGATTTTCAAGGGCCGCCGGGGCGCACCGGACACCACGCGACGTGCGGTGCTCTTCCAGCCGCCGGACCCTACCTCCGGCCGAGCCGTTTCCAGTGATCTGCACCGACGGCCGCTCCGCCCGGCTCACGCCCCAGTTTTGCAGCGACCGCCGCGCCCTCCTACTCATCGGGGCTCGGCACTTGCCCCGACGGCCGGGTATAGGTCACGCGCTTAAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGGGGACTTGTTCCCGGTCCGCCTCTCGAGGACGCTTCTCCGTACTACAATTCGGACGCCTTACGACGCCGCATTCTCAAGCCGGGCTATTCCCGGTTCGCTCGCCGTTACTAAGGGAATCCTTGATCAACCAGGTAGCATTCCTTTGACAACGCCGGCACCGCGTAGGGAGACCCCGCAACGAGCACAGCAGTCGTACATGTCTAGCGACAAAACGCTTGAAATTGGACGTCAAGGGTGCAAAGACCCCAAGCCCACCGAATGTTCTGTATCCGAGACATCAAGCAACAACCTGGGAACCGTCGCAAGGTGCACACCAAAAGGCATGCCAATGCAAGGGGCACAGGCACTACTACGATGTCCTTCCCCTAACCGAATGGCTCAGGGAAGGAAAGGGTCGACAAGAGGCACCATTCCTTTACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

385

Amino Acids

41.49

Weight (kDa)

11.31

Isoelectric Point (pI)

66.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000098)

Species Orthologous Gene IDs
pyrus_communis pycom05g23460 pycom581g00100 pycom849g00040
rosa_multiflora Rmu_sc0019961.1_g000001
rosa_roxburghii Rroxscaffold_100G00451180 Rroxscaffold_102G00450890 Rroxscaffold_102G00450920 Rroxscaffold_103G00450530 Rroxscaffold_103G00450560 Rroxscaffold_104G00444830 Rroxscaffold_104G00444900 Rroxscaffold_105G00447100 Rroxscaffold_105G00447180 Rroxscaffold_107G00442470 Rroxscaffold_107G00442480 Rroxscaffold_107G00442520 Rroxscaffold_107G00442540 Rroxscaffold_107G00442560 Rroxscaffold_107G00442570 Rroxscaffold_107G00442600 Rroxscaffold_107G00442630 Rroxscaffold_107G00442650 Rroxscaffold_107G00442660 Rroxscaffold_108G00451480 Rroxscaffold_110G00451510 Rroxscaffold_111G00451550 Rroxscaffold_112G00451590 Rroxscaffold_113G00451630 Rroxscaffold_114G00451650 Rroxscaffold_116G00451710 Rroxscaffold_117G00451740 Rroxscaffold_117G00451750 Rroxscaffold_121G00451840 Rroxscaffold_122G00451860 Rroxscaffold_122G00451880 Rroxscaffold_123G00451920 Rroxscaffold_124G00451950 Rroxscaffold_128G00452040 Rroxscaffold_128G00452060 Rroxscaffold_12G00450600 Rroxscaffold_12G00450620 Rroxscaffold_131G00452110 Rroxscaffold_138G00452180 Rroxscaffold_13G00448630 Rroxscaffold_145G00452240 Rroxscaffold_14G00441930 Rroxscaffold_14G00441950 Rroxscaffold_14G00442050 Rroxscaffold_14G00442080 Rroxscaffold_15G00447500 Rroxscaffold_162G00450770 Rroxscaffold_16G00446200 Rroxscaffold_16G00446210 Rroxscaffold_16G00446240 Rroxscaffold_17G00435360 Rroxscaffold_17G00435410 Rroxscaffold_17G00435450 Rroxscaffold_17G00435480 Rroxscaffold_17G00435500 Rroxscaffold_17G00435600 Rroxscaffold_17G00435660 Rroxscaffold_17G00435680 Rroxscaffold_17G00435760 Rroxscaffold_17G00435780 Rroxscaffold_17G00435810 Rroxscaffold_17G00435840 Rroxscaffold_17G00435870 Rroxscaffold_18G00446030 Rroxscaffold_18G00446060 Rroxscaffold_18G00446130 Rroxscaffold_19G00448890 Rroxscaffold_19G00448920 Rroxscaffold_19G00448940 Rroxscaffold_19G00448970 Rroxscaffold_1G00000020 Rroxscaffold_1G00000050 Rroxscaffold_1G00000160 Rroxscaffold_20G00445060 Rroxscaffold_20G00445100 Rroxscaffold_20G00445130 Rroxscaffold_21G00439490 Rroxscaffold_21G00439560 Rroxscaffold_21G00439580 Rroxscaffold_21G00439620 Rroxscaffold_21G00439630 Rroxscaffold_22G00439910 Rroxscaffold_22G00439950 Rroxscaffold_23G00451020 Rroxscaffold_23G00451040 Rroxscaffold_23G00451070 Rroxscaffold_24G00444920 Rroxscaffold_24G00444950 Rroxscaffold_24G00445000 Rroxscaffold_25G00450200 Rroxscaffold_26G00447730 Rroxscaffold_27G00446570 Rroxscaffold_27G00446600 Rroxscaffold_28G00446830 Rroxscaffold_28G00446860 Rroxscaffold_28G00446910 Rroxscaffold_29G00441560 Rroxscaffold_29G00441570 Rroxscaffold_29G00441590 Rroxscaffold_29G00441630 Rroxscaffold_29G00441640 Rroxscaffold_29G00441670 Rroxscaffold_29G00441680 Rroxscaffold_29G00441860 Rroxscaffold_30G00449540 Rroxscaffold_30G00449570 Rroxscaffold_30G00449580 Rroxscaffold_31G00438120 Rroxscaffold_31G00438140 Rroxscaffold_31G00438180 Rroxscaffold_31G00438190 Rroxscaffold_31G00438220 Rroxscaffold_31G00438230 Rroxscaffold_32G00442740 Rroxscaffold_32G00442760 Rroxscaffold_33G00439670 Rroxscaffold_33G00439720 Rroxscaffold_33G00439740 Rroxscaffold_33G00439760 Rroxscaffold_33G00439820 Rroxscaffold_34G00443140 Rroxscaffold_34G00443200 Rroxscaffold_34G00443250 Rroxscaffold_34G00443370 Rroxscaffold_34G00443390 Rroxscaffold_35G00441050 Rroxscaffold_35G00441080 Rroxscaffold_35G00441090 Rroxscaffold_35G00441170 Rroxscaffold_35G00441190 Rroxscaffold_35G00441230 Rroxscaffold_36G00440100 Rroxscaffold_36G00440170 Rroxscaffold_37G00445170 Rroxscaffold_38G00444440 Rroxscaffold_38G00444500 Rroxscaffold_38G00444550 Rroxscaffold_39G00448200 Rroxscaffold_39G00448210 Rroxscaffold_40G00447650 Rroxscaffold_40G00447680 Rroxscaffold_40G00447700 Rroxscaffold_40G00447710 Rroxscaffold_41G00451110 Rroxscaffold_41G00451130 Rroxscaffold_42G00450430 Rroxscaffold_43G00449800 Rroxscaffold_43G00449860 Rroxscaffold_43G00449920 Rroxscaffold_43G00449930 Rroxscaffold_44G00440540 Rroxscaffold_44G00440580 Rroxscaffold_44G00440660 Rroxscaffold_45G00438900 Rroxscaffold_45G00438930 Rroxscaffold_45G00438950 Rroxscaffold_47G00444020 Rroxscaffold_47G00444060 Rroxscaffold_47G00444120 Rroxscaffold_48G00448450 Rroxscaffold_49G00438570 Rroxscaffold_49G00438650 Rroxscaffold_49G00438700 Rroxscaffold_4G00321080 Rroxscaffold_50G00444130 Rroxscaffold_50G00444200 Rroxscaffold_50G00444210 Rroxscaffold_50G00444330 Rroxscaffold_50G00444350 Rroxscaffold_51G00447840 Rroxscaffold_52G00439310 Rroxscaffold_52G00439390 Rroxscaffold_54G00443660 Rroxscaffold_55G00450020 Rroxscaffold_55G00450050 Rroxscaffold_55G00450060 Rroxscaffold_55G00450080 Rroxscaffold_55G00450090 Rroxscaffold_55G00450120 Rroxscaffold_57G00443070 Rroxscaffold_59G00442210 Rroxscaffold_59G00442220 Rroxscaffold_60G00448360 Rroxscaffold_60G00448370 Rroxscaffold_60G00448410 Rroxscaffold_61G00449990 Rroxscaffold_62G00438040 Rroxscaffold_62G00438060 Rroxscaffold_62G00438080 Rroxscaffold_63G00444410 Rroxscaffold_63G00444430 Rroxscaffold_64G00450670 Rroxscaffold_65G00445300 Rroxscaffold_65G00445340 Rroxscaffold_65G00445360 Rroxscaffold_65G00445380 Rroxscaffold_65G00445420 Rroxscaffold_66G00437660 Rroxscaffold_66G00437820 Rroxscaffold_66G00437840 Rroxscaffold_66G00437890 Rroxscaffold_67G00448140 Rroxscaffold_67G00448150 Rroxscaffold_68G00447010 Rroxscaffold_69G00446670 Rroxscaffold_69G00446710 Rroxscaffold_69G00446770 Rroxscaffold_6G00387820 Rroxscaffold_70G00446300 Rroxscaffold_70G00446340 Rroxscaffold_70G00446380 Rroxscaffold_71G00445590 Rroxscaffold_71G00445600 Rroxscaffold_71G00445630 Rroxscaffold_71G00445690 Rroxscaffold_71G00445720 Rroxscaffold_71G00445740 Rroxscaffold_71G00445770 Rroxscaffold_72G00449370 Rroxscaffold_72G00449410 Rroxscaffold_72G00449450 Rroxscaffold_73G00439000 Rroxscaffold_73G00439060 Rroxscaffold_73G00439160 Rroxscaffold_73G00439270 Rroxscaffold_74G00442920 Rroxscaffold_75G00447260 Rroxscaffold_75G00447290 Rroxscaffold_75G00447430 Rroxscaffold_76G00448540 Rroxscaffold_76G00448610 Rroxscaffold_77G00449150 Rroxscaffold_78G00449610 Rroxscaffold_79G00450210 Rroxscaffold_80G00450330 Rroxscaffold_80G00450350 Rroxscaffold_81G00450480 Rroxscaffold_83G00450980 Rroxscaffold_85G00451230 Rroxscaffold_86G00451270 Rroxscaffold_89G00451410 Rroxscaffold_90G00448760 Rroxscaffold_90G00448770 Rroxscaffold_90G00448820 Rroxscaffold_91G00443000 Rroxscaffold_91G00443060 Rroxscaffold_92G00446430 Rroxscaffold_93G00440830 Rroxscaffold_93G00440850 Rroxscaffold_93G00440860 Rroxscaffold_93G00440880 Rroxscaffold_93G00440910 Rroxscaffold_94G00445830 Rroxscaffold_94G00445910 Rroxscaffold_94G00445940 Rroxscaffold_94G00446020 Rroxscaffold_97G00442340 Rroxscaffold_97G00442390 Rroxscaffold_97G00442400 Rroxscaffold_98G00451350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 964
AccB1I GGYRCC 2 cut(s) 889, 1139
AccBSI CCGCTC 2 cut(s) 373, 597
AccI GTMKAC 3 cut(s) 256, 299, 1130
AccII CGCG 6 cut(s) 363, 382, 522, 636, 692, 895
AccIII TCCGGA 1 cut(s) 482
AclI AACGTT 1 cut(s) 95
AclWI GGATC 1 cut(s) 23
AcoI YGGCCR 5 cut(s) 234, 353, 561, 592, 674
AcyI GRCGYC 3 cut(s) 788, 798, 961
AfaI GTAC 4 cut(s) 286, 454, 775, 929
AflII CTTAAG 1 cut(s) 695
AflIII ACRYGT 1 cut(s) 930
AgsI TTSAA 3 cut(s) 308, 492, 953
AjiI CACGTC 1 cut(s) 526
AjnI CCWGG 2 cut(s) 862, 1023
AluBI AGCT 2 cut(s) 186, 391
AluI AGCT 2 cut(s) 186, 391
Alw21I GWGCWC 3 cut(s) 536, 919, 1046
Alw26I GTCTC 3 cut(s) 426, 896, 1001
Alw44I GTGCAC 1 cut(s) 1042
AlwI GGATC 1 cut(s) 23
Ama87I CYCGRG 3 cut(s) 313, 392, 757
Aor13HI TCCGGA 1 cut(s) 482
AoxI GGCC 6 cut(s) 234, 353, 495, 561, 592, 674
ApaLI GTGCAC 1 cut(s) 1042
ApeKI GCWGC 2 cut(s) 388, 624
AspLEI GCGC 4 cut(s) 508, 638, 694, 702
AspS9I GGNCC 5 cut(s) 42, 477, 495, 549, 748
AsuHPI GGTGA 2 cut(s) 394, 416
AvaI CYCGRG 3 cut(s) 313, 392, 757
AvaII GGWCC 4 cut(s) 42, 477, 549, 748
BaeGI GKGCMC 3 cut(s) 64, 1046, 1075
BanI GGYRCC 2 cut(s) 889, 1139
BanII GRGCYC 1 cut(s) 658
BbsI GAAGAC 1 cut(s) 188
Bbv12I GWGCWC 3 cut(s) 536, 919, 1046
BbvI GCAGC 2 cut(s) 400, 636
BccI CCATC 1 cut(s) 711
BceAI ACGGC 5 cut(s) 221, 553, 607, 689, 821
BcgI CGANNNNNNTGC 2 cut(s) 906, 940
BciT130I CCWGG 2 cut(s) 864, 1025
BciVI GTATCC 1 cut(s) 1012
BclI TGATCA 1 cut(s) 856
BcoDI GTCTC 3 cut(s) 426, 896, 1001
BfaI CTAG 3 cut(s) 176, 719, 936
BfoI RGCGCY 1 cut(s) 703
BfrI CTTAAG 1 cut(s) 695
BfuI GTATCC 1 cut(s) 1012
BglI GCCNNNNNGGC 2 cut(s) 503, 673
BisI GCNGC 9 cut(s) 364, 380, 389, 498, 544, 595, 625, 634, 801
BlsI GCNGC 9 cut(s) 365, 381, 390, 499, 545, 596, 626, 635, 802
Bme18I GGWCC 4 cut(s) 42, 477, 549, 748
BmeT110I CYCGRG 3 cut(s) 313, 392, 757
BmgBI CACGTC 1 cut(s) 526
BmgT120I GGNCC 5 cut(s) 42, 477, 495, 549, 748
BmiI GGNNCC 6 cut(s) 43, 132, 551, 891, 1030, 1141
BmrI ACTGGG 2 cut(s) 334, 610
BmsI GCATC 1 cut(s) 430
BmuI ACTGGG 2 cut(s) 334, 610
BoxI GACNNNNGTC 1 cut(s) 178
BpiI GAAGAC 1 cut(s) 188
BplI GAGNNNNNCTC 2 cut(s) 170, 202
Bpu10I CCTNAGC 1 cut(s) 1113
BpuEI CTTGAG 2 cut(s) 137, 793
BsaHI GRCGYC 3 cut(s) 788, 798, 961
BsaI GGTCTC 2 cut(s) 426, 896
BsaJI CCNNGG 8 cut(s) 231, 237, 313, 350, 380, 427, 501, 1024
BsaWI WCCGGW 2 cut(s) 482, 510
BsaXI ACNNNNNCTCC 4 cut(s) 541, 571, 581, 611
Bse118I RCCGGY 3 cut(s) 355, 458, 886
Bse1I ACTGG 4 cut(s) 288, 340, 575, 616
BseAI TCCGGA 1 cut(s) 482
BseBI CCWGG 2 cut(s) 864, 1025
BseDI CCNNGG 8 cut(s) 231, 237, 313, 350, 380, 427, 501, 1024
BseGI GGATG 1 cut(s) 703
BseMII CTCAG 1 cut(s) 1127
BseNI ACTGG 4 cut(s) 288, 340, 575, 616
BseSI GKGCMC 3 cut(s) 64, 1046, 1075
BseX3I CGGCCG 4 cut(s) 353, 561, 592, 674
BseXI GCAGC 2 cut(s) 400, 636
BsgI GTGCAG 1 cut(s) 568
Bsh1236I CGCG 6 cut(s) 363, 382, 522, 636, 692, 895
Bsh1285I CGRYCG 7 cut(s) 303, 356, 459, 564, 595, 631, 677
BshFI GGCC 6 cut(s) 236, 355, 497, 563, 594, 676
BshNI GGYRCC 2 cut(s) 889, 1139
BsiEI CGRYCG 7 cut(s) 303, 356, 459, 564, 595, 631, 677
BsiHKAI GWGCWC 3 cut(s) 536, 919, 1046
BsiHKCI CYCGRG 3 cut(s) 313, 392, 757
BslFI GGGAC 3 cut(s) 276, 332, 749
BsmAI GTCTC 3 cut(s) 426, 896, 1001
BsmFI GGGAC 3 cut(s) 276, 332, 749
BsmI GAATGC 2 cut(s) 803, 870
BsnI GGCC 6 cut(s) 236, 355, 497, 563, 594, 676
Bso31I GGTCTC 2 cut(s) 426, 896
BsoBI CYCGRG 3 cut(s) 313, 392, 757
Bsp1286I GDGCHC 6 cut(s) 64, 536, 658, 919, 1046, 1075
Bsp13I TCCGGA 1 cut(s) 482
Bsp143I GATC 3 cut(s) 15, 579, 856
BspANI GGCC 6 cut(s) 236, 355, 497, 563, 594, 676
BspCNI CTCAG 1 cut(s) 1126
BspEI TCCGGA 1 cut(s) 482
BspFNI CGCG 6 cut(s) 363, 382, 522, 636, 692, 895
BspLI GGNNCC 6 cut(s) 43, 132, 551, 891, 1030, 1141
BspPI GGATC 1 cut(s) 23
BspQI GCTCTTC 1 cut(s) 541
BspT107I GGYRCC 2 cut(s) 889, 1139
BspTI CTTAAG 1 cut(s) 695
BspTNI GGTCTC 2 cut(s) 426, 896
BsrBI CCGCTC 2 cut(s) 373, 597
BsrFI RCCGGY 3 cut(s) 355, 458, 886
BsrI ACTGG 4 cut(s) 288, 340, 575, 616
BssAI RCCGGY 3 cut(s) 355, 458, 886
BssECI CCNNGG 8 cut(s) 231, 237, 313, 350, 380, 427, 501, 1024
BssMI GATC 3 cut(s) 15, 579, 856
BssNI GRCGYC 3 cut(s) 788, 798, 961
BssT1I CCWWGG 2 cut(s) 231, 427
Bst2UI CCWGG 2 cut(s) 864, 1025
Bst4CI ACNGT 2 cut(s) 304, 1033
Bst6I CTCTTC 1 cut(s) 541
BstACI GRCGYC 3 cut(s) 788, 798, 961
BstAFI CTTAAG 1 cut(s) 695
BstC8I GCNNGC 6 cut(s) 23, 357, 361, 834, 888, 1058
BstDEI CTNAG 2 cut(s) 843, 1113
BstDSI CCRYGG 2 cut(s) 237, 380
BstF5I GGATG 1 cut(s) 703
BstFNI CGCG 6 cut(s) 363, 382, 522, 636, 692, 895
BstH2I RGCGCY 1 cut(s) 703
BstHHI GCGC 4 cut(s) 508, 638, 694, 702
BstKTI GATC 3 cut(s) 18, 582, 859
BstMAI GTCTC 3 cut(s) 426, 896, 1001
BstMBI GATC 3 cut(s) 15, 579, 856
BstMCI CGRYCG 7 cut(s) 303, 356, 459, 564, 595, 631, 677
BstNI CCWGG 2 cut(s) 864, 1025
BstNSI RCATGY 2 cut(s) 934, 1060
BstPAI GACNNNNGTC 1 cut(s) 178
BstSLI GKGCMC 3 cut(s) 64, 1046, 1075
BstUI CGCG 6 cut(s) 363, 382, 522, 636, 692, 895
BstV1I GCAGC 2 cut(s) 400, 636
BstV2I GAAGAC 1 cut(s) 188
BstZI CGGCCG 4 cut(s) 353, 561, 592, 674
BsuI GTATCC 1 cut(s) 1012
BsuRI GGCC 6 cut(s) 236, 355, 497, 563, 594, 676
BtgI CCRYGG 2 cut(s) 237, 380
BtrI CACGTC 1 cut(s) 526
BtsCI GGATG 1 cut(s) 703
BtsI GCAGTG 2 cut(s) 38, 64
BtsIMutI CAGTG 3 cut(s) 38, 64, 582
Cac8I GCNNGC 6 cut(s) 23, 357, 361, 834, 888, 1058
CfoI GCGC 4 cut(s) 508, 638, 694, 702
Cfr10I RCCGGY 3 cut(s) 355, 458, 886
Cfr13I GGNCC 5 cut(s) 42, 477, 495, 549, 748
Cfr42I CCGCGG 1 cut(s) 383
Cfr9I CCCGGG 1 cut(s) 313
CpoI CGGWCCG 1 cut(s) 748
CseI GACGC 3 cut(s) 772, 796, 806
CsiI ACCWGGT 1 cut(s) 862
Csp6I GTAC 4 cut(s) 285, 453, 774, 928
CspI CGGWCCG 1 cut(s) 748
CviAII CATG 2 cut(s) 931, 1057
CviQI GTAC 4 cut(s) 285, 453, 774, 928
DdeI CTNAG 2 cut(s) 843, 1113
DpnI GATC 3 cut(s) 17, 581, 858
DpnII GATC 3 cut(s) 15, 579, 856
EaeI YGGCCR 5 cut(s) 234, 353, 561, 592, 674
EagI CGGCCG 4 cut(s) 353, 561, 592, 674
Eam1104I CTCTTC 1 cut(s) 541
EarI CTCTTC 1 cut(s) 541
EciI GGCGGA 2 cut(s) 589, 740
EclXI CGGCCG 4 cut(s) 353, 561, 592, 674
Eco130I CCWWGG 2 cut(s) 231, 427
Eco24I GRGCYC 1 cut(s) 658
Eco31I GGTCTC 2 cut(s) 426, 896
Eco47I GGWCC 4 cut(s) 42, 477, 549, 748
Eco52I CGGCCG 4 cut(s) 353, 561, 592, 674
Eco88I CYCGRG 3 cut(s) 313, 392, 757
EcoRII CCWGG 2 cut(s) 862, 1023
EcoT14I CCWWGG 2 cut(s) 231, 427
EcoT38I GRGCYC 1 cut(s) 658
ErhI CCWWGG 2 cut(s) 231, 427
FaeI CATG 2 cut(s) 934, 1060
FaiI YATR 5 cut(s) 141, 449, 683, 932, 1058
FalI AAGNNNNNCTT 2 cut(s) 20, 52
FaqI GGGAC 3 cut(s) 276, 332, 749
FatI CATG 2 cut(s) 930, 1056
FauI CCCGC 5 cut(s) 30, 72, 213, 378, 915
FbaI TGATCA 1 cut(s) 856
FblI GTMKAC 3 cut(s) 256, 299, 1130
Fnu4HI GCNGC 9 cut(s) 364, 380, 389, 498, 544, 595, 625, 634, 801
FokI GGATG 1 cut(s) 690
FriOI GRGCYC 1 cut(s) 658
Fsp4HI GCNGC 9 cut(s) 364, 380, 389, 498, 544, 595, 625, 634, 801
FspBI CTAG 3 cut(s) 176, 719, 936
GlaI GCGC 4 cut(s) 507, 637, 693, 701
GluI GCNGC 9 cut(s) 364, 380, 389, 498, 544, 595, 625, 634, 801
HaeII RGCGCY 1 cut(s) 703
HaeIII GGCC 6 cut(s) 236, 355, 497, 563, 594, 676
HgaI GACGC 3 cut(s) 772, 796, 806
HhaI GCGC 4 cut(s) 508, 638, 694, 702
Hin1I GRCGYC 3 cut(s) 788, 798, 961
Hin1II CATG 2 cut(s) 934, 1060
Hin6I GCGC 4 cut(s) 506, 636, 692, 700
HinP1I GCGC 4 cut(s) 506, 636, 692, 700
HincII GTYRAC 2 cut(s) 300, 1131
HindII GTYRAC 2 cut(s) 300, 1131
HinfI GANTC 7 cut(s) 73, 179, 211, 271, 296, 725, 849
HphI GGTGA 2 cut(s) 394, 416
Hpy166II GTNNAC 6 cut(s) 257, 300, 402, 424, 1044, 1131
Hpy188I TCNGA 6 cut(s) 72, 173, 270, 295, 786, 1006
Hpy188III TCNNGA 2 cut(s) 483, 757
Hpy8I GTNNAC 6 cut(s) 257, 300, 402, 424, 1044, 1131
Hpy99I CGWCG 6 cut(s) 417, 527, 593, 675, 800, 1037
HpyAV CCTTC 4 cut(s) 121, 322, 1104, 1113
HpyCH4III ACNGT 2 cut(s) 304, 1033
HpyCH4IV ACGT 3 cut(s) 95, 525, 961
HpyCH4V TGCA 5 cut(s) 585, 624, 972, 1044, 1066
HpyF3I CTNAG 2 cut(s) 843, 1113
HpySE526I ACGT 3 cut(s) 95, 525, 961
Hsp92I GRCGYC 3 cut(s) 788, 798, 961
Hsp92II CATG 2 cut(s) 934, 1060
HspAI GCGC 4 cut(s) 506, 636, 692, 700
Kpn2I TCCGGA 1 cut(s) 482
KroI GCCGGC 2 cut(s) 355, 886
KroNI GCCGGC 2 cut(s) 357, 888
Ksp22I TGATCA 1 cut(s) 856
KspI CCGCGG 1 cut(s) 383
Kzo9I GATC 3 cut(s) 15, 579, 856
LguI GCTCTTC 1 cut(s) 541
LmnI GCTCC 3 cut(s) 136, 331, 602
Lsp1109I GCAGC 2 cut(s) 400, 636
LweI GCATC 1 cut(s) 430
MabI ACCWGGT 1 cut(s) 862
MaeI CTAG 3 cut(s) 176, 719, 936
MaeII ACGT 3 cut(s) 95, 525, 961
MaeIII GTNAC 2 cut(s) 686, 838
MalI GATC 3 cut(s) 17, 581, 858
MbiI CCGCTC 2 cut(s) 373, 597
MboI GATC 3 cut(s) 15, 579, 856
MboII GAAGA 2 cut(s) 188, 528
MhlI GDGCHC 6 cut(s) 64, 536, 658, 919, 1046, 1075
MluCI AATT 2 cut(s) 780, 954
MlyI GAGTC 2 cut(s) 188, 305
MmeI TCCRAC 1 cut(s) 151
MnlI CCTC 9 cut(s) 45, 78, 159, 490, 567, 650, 753, 764, 1130
MroI TCCGGA 1 cut(s) 482
MroNI GCCGGC 2 cut(s) 355, 886
MseI TTAA 2 cut(s) 98, 696
MslI CAYNNNNRTG 1 cut(s) 1061
MspA1I CMGCKG 1 cut(s) 382
MspCI CTTAAG 1 cut(s) 695
Mva1269I GAATGC 2 cut(s) 803, 870
MvaI CCWGG 2 cut(s) 864, 1025
MvnI CGCG 6 cut(s) 363, 382, 522, 636, 692, 895
NaeI GCCGGC 2 cut(s) 357, 888
NdeII GATC 3 cut(s) 15, 579, 856
NgoMIV GCCGGC 2 cut(s) 355, 886
NlaIII CATG 2 cut(s) 934, 1060
NlaIV GGNNCC 6 cut(s) 43, 132, 551, 891, 1030, 1141
NmeAIII GCCGAG 2 cut(s) 589, 637
NmuCI GTSAC 1 cut(s) 686
NspI RCATGY 2 cut(s) 934, 1060
PaeI GCATGC 1 cut(s) 1060
PaeR7I CTCGAG 2 cut(s) 392, 757
PciI ACATGT 1 cut(s) 930
PciSI GCTCTTC 1 cut(s) 541
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PctI GAATGC 2 cut(s) 803, 870
PdiI GCCGGC 2 cut(s) 357, 888
PfeI GAWTC 5 cut(s) 73, 211, 271, 725, 849
PkrI GCNGC 9 cut(s) 365, 381, 390, 499, 545, 596, 626, 635, 802
PleI GAGTC 2 cut(s) 187, 304
PpsI GAGTC 2 cut(s) 187, 304
PscI ACATGT 1 cut(s) 930
PshAI GACNNNNGTC 1 cut(s) 178
Psp1406I AACGTT 1 cut(s) 95
Psp6I CCWGG 2 cut(s) 862, 1023
PspGI CCWGG 2 cut(s) 862, 1023
PspN4I GGNNCC 6 cut(s) 43, 132, 551, 891, 1030, 1141
PspPI GGNCC 5 cut(s) 42, 477, 495, 549, 748
PspXI VCTCGAGB 1 cut(s) 392
RsaI GTAC 4 cut(s) 286, 454, 775, 929
RsaNI GTAC 4 cut(s) 285, 453, 774, 928
RseI CAYNNNNRTG 1 cut(s) 1061
Rsr2I CGGWCCG 1 cut(s) 748
RsrII CGGWCCG 1 cut(s) 748
SacII CCGCGG 1 cut(s) 383
SalI GTCGAC 2 cut(s) 298, 1129
SapI GCTCTTC 1 cut(s) 541
SaqAI TTAA 2 cut(s) 98, 696
SatI GCNGC 9 cut(s) 364, 380, 389, 498, 544, 595, 625, 634, 801
Sau3AI GATC 3 cut(s) 15, 579, 856
Sau96I GGNCC 5 cut(s) 42, 477, 495, 549, 748
SchI GAGTC 2 cut(s) 188, 305
SduI GDGCHC 6 cut(s) 64, 536, 658, 919, 1046, 1075
SexAI ACCWGGT 1 cut(s) 862
SfaNI GCATC 1 cut(s) 430
Sfr274I CTCGAG 2 cut(s) 392, 757
Sfr303I CCGCGG 1 cut(s) 383
SgrBI CCGCGG 1 cut(s) 383
SinI GGWCC 4 cut(s) 42, 477, 549, 748
SlaI CTCGAG 2 cut(s) 392, 757
SmaI CCCGGG 1 cut(s) 315
SmiMI CAYNNNNRTG 1 cut(s) 1061
SmlI CTYRAG 5 cut(s) 152, 392, 695, 757, 808
SmoI CTYRAG 5 cut(s) 152, 392, 695, 757, 808
SphI GCATGC 1 cut(s) 1060
Sse9I AATT 2 cut(s) 780, 954
SspMI CTAG 3 cut(s) 176, 719, 936
StyI CCWWGG 2 cut(s) 231, 427
TaaI ACNGT 2 cut(s) 304, 1033
TaiI ACGT 3 cut(s) 98, 528, 964
TaqI TCGA 4 cut(s) 299, 393, 758, 1130
TaqII GACCGA 1 cut(s) 465
TasI AATT 2 cut(s) 780, 954
TauI GCSGC 7 cut(s) 366, 382, 500, 546, 597, 636, 803
TfiI GAWTC 5 cut(s) 73, 211, 271, 725, 849
Tru1I TTAA 2 cut(s) 98, 696
Tru9I TTAA 2 cut(s) 98, 696
TscAI CASTG 3 cut(s) 38, 64, 582
TseFI GTSAC 1 cut(s) 686
TseI GCWGC 2 cut(s) 388, 624
Tsp45I GTSAC 1 cut(s) 686
TspGWI ACGGA 4 cut(s) 93, 272, 334, 761
TspMI CCCGGG 1 cut(s) 313
TspRI CASTG 3 cut(s) 38, 64, 582
Vha464I CTTAAG 1 cut(s) 695
VneI GTGCAC 1 cut(s) 1042
VpaK11BI GGWCC 4 cut(s) 42, 477, 549, 748
XceI RCATGY 2 cut(s) 934, 1060
XhoI CTCGAG 2 cut(s) 392, 757
XmaI CCCGGG 1 cut(s) 313
XmiI GTMKAC 3 cut(s) 256, 299, 1130
XspI CTAG 3 cut(s) 176, 719, 936
ZraI GACGTC 1 cut(s) 962
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.