Rroxscaffold_31G00438230

protein Sb1211s002020 source

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000031
OG0000098
Physical Location & Seq
Forward (+)
151574 .. 152025
452 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_31G00438230.1

Sequence Viewer

Length: 357 bp
ATGGAACCTTTCCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGACGGCCGCTCCGCCGGCTCACGCCCCAGTGTTTTGCAGCGACCGCCGCGCCCTCCTACTCATCGGGGCCTCGGCACTTGCCCCGACGGCCGGTATAGGTCACGCGCTTAAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCACGCGTAGTCGGGCACCGTAACCCGGCTTCCGGTTCATCCCGCATCGCCGCCTCGCTTACCAAAAATGGCCCACTTGGAGCTCTCGATTCCTTGGCGTGGCTCAACAAAGCAGCCACGCCGTCCTACCTATTTAAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

12.38

Weight (kDa)

10.64

Isoelectric Point (pI)

52.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000098)

Species Orthologous Gene IDs
pyrus_communis pycom05g23460 pycom581g00100 pycom849g00040
rosa_multiflora Rmu_sc0019961.1_g000001
rosa_roxburghii Rroxscaffold_100G00451180 Rroxscaffold_102G00450890 Rroxscaffold_102G00450920 Rroxscaffold_103G00450530 Rroxscaffold_103G00450560 Rroxscaffold_104G00444830 Rroxscaffold_104G00444900 Rroxscaffold_105G00447100 Rroxscaffold_105G00447180 Rroxscaffold_107G00442470 Rroxscaffold_107G00442480 Rroxscaffold_107G00442520 Rroxscaffold_107G00442540 Rroxscaffold_107G00442560 Rroxscaffold_107G00442570 Rroxscaffold_107G00442600 Rroxscaffold_107G00442630 Rroxscaffold_107G00442650 Rroxscaffold_107G00442660 Rroxscaffold_108G00451480 Rroxscaffold_110G00451510 Rroxscaffold_111G00451550 Rroxscaffold_112G00451590 Rroxscaffold_113G00451630 Rroxscaffold_114G00451650 Rroxscaffold_116G00451710 Rroxscaffold_117G00451740 Rroxscaffold_117G00451750 Rroxscaffold_121G00451840 Rroxscaffold_122G00451860 Rroxscaffold_122G00451880 Rroxscaffold_123G00451920 Rroxscaffold_124G00451950 Rroxscaffold_128G00452040 Rroxscaffold_128G00452060 Rroxscaffold_12G00450600 Rroxscaffold_12G00450620 Rroxscaffold_131G00452110 Rroxscaffold_138G00452180 Rroxscaffold_13G00448630 Rroxscaffold_145G00452240 Rroxscaffold_14G00441930 Rroxscaffold_14G00441950 Rroxscaffold_14G00442050 Rroxscaffold_14G00442080 Rroxscaffold_15G00447500 Rroxscaffold_162G00450770 Rroxscaffold_16G00446200 Rroxscaffold_16G00446210 Rroxscaffold_16G00446240 Rroxscaffold_17G00435360 Rroxscaffold_17G00435410 Rroxscaffold_17G00435450 Rroxscaffold_17G00435480 Rroxscaffold_17G00435500 Rroxscaffold_17G00435600 Rroxscaffold_17G00435660 Rroxscaffold_17G00435680 Rroxscaffold_17G00435760 Rroxscaffold_17G00435780 Rroxscaffold_17G00435810 Rroxscaffold_17G00435840 Rroxscaffold_17G00435870 Rroxscaffold_18G00446030 Rroxscaffold_18G00446060 Rroxscaffold_18G00446130 Rroxscaffold_19G00448890 Rroxscaffold_19G00448920 Rroxscaffold_19G00448940 Rroxscaffold_19G00448970 Rroxscaffold_1G00000020 Rroxscaffold_1G00000050 Rroxscaffold_1G00000160 Rroxscaffold_20G00445060 Rroxscaffold_20G00445100 Rroxscaffold_20G00445130 Rroxscaffold_21G00439490 Rroxscaffold_21G00439560 Rroxscaffold_21G00439580 Rroxscaffold_21G00439620 Rroxscaffold_21G00439630 Rroxscaffold_22G00439910 Rroxscaffold_22G00439950 Rroxscaffold_23G00451020 Rroxscaffold_23G00451040 Rroxscaffold_23G00451070 Rroxscaffold_24G00444920 Rroxscaffold_24G00444950 Rroxscaffold_24G00445000 Rroxscaffold_25G00450200 Rroxscaffold_26G00447730 Rroxscaffold_27G00446570 Rroxscaffold_27G00446600 Rroxscaffold_28G00446830 Rroxscaffold_28G00446860 Rroxscaffold_28G00446910 Rroxscaffold_29G00441560 Rroxscaffold_29G00441570 Rroxscaffold_29G00441590 Rroxscaffold_29G00441630 Rroxscaffold_29G00441640 Rroxscaffold_29G00441670 Rroxscaffold_29G00441680 Rroxscaffold_29G00441860 Rroxscaffold_30G00449540 Rroxscaffold_30G00449570 Rroxscaffold_30G00449580 Rroxscaffold_31G00438120 Rroxscaffold_31G00438140 Rroxscaffold_31G00438180 Rroxscaffold_31G00438190 Rroxscaffold_31G00438220 Rroxscaffold_31G00438230 Rroxscaffold_32G00442740 Rroxscaffold_32G00442760 Rroxscaffold_33G00439670 Rroxscaffold_33G00439720 Rroxscaffold_33G00439740 Rroxscaffold_33G00439760 Rroxscaffold_33G00439820 Rroxscaffold_34G00443140 Rroxscaffold_34G00443200 Rroxscaffold_34G00443250 Rroxscaffold_34G00443370 Rroxscaffold_34G00443390 Rroxscaffold_35G00441050 Rroxscaffold_35G00441080 Rroxscaffold_35G00441090 Rroxscaffold_35G00441170 Rroxscaffold_35G00441190 Rroxscaffold_35G00441230 Rroxscaffold_36G00440100 Rroxscaffold_36G00440170 Rroxscaffold_37G00445170 Rroxscaffold_38G00444440 Rroxscaffold_38G00444500 Rroxscaffold_38G00444550 Rroxscaffold_39G00448200 Rroxscaffold_39G00448210 Rroxscaffold_40G00447650 Rroxscaffold_40G00447680 Rroxscaffold_40G00447700 Rroxscaffold_40G00447710 Rroxscaffold_41G00451110 Rroxscaffold_41G00451130 Rroxscaffold_42G00450430 Rroxscaffold_43G00449800 Rroxscaffold_43G00449860 Rroxscaffold_43G00449920 Rroxscaffold_43G00449930 Rroxscaffold_44G00440540 Rroxscaffold_44G00440580 Rroxscaffold_44G00440660 Rroxscaffold_45G00438900 Rroxscaffold_45G00438930 Rroxscaffold_45G00438950 Rroxscaffold_47G00444020 Rroxscaffold_47G00444060 Rroxscaffold_47G00444120 Rroxscaffold_48G00448450 Rroxscaffold_49G00438570 Rroxscaffold_49G00438650 Rroxscaffold_49G00438700 Rroxscaffold_4G00321080 Rroxscaffold_50G00444130 Rroxscaffold_50G00444200 Rroxscaffold_50G00444210 Rroxscaffold_50G00444330 Rroxscaffold_50G00444350 Rroxscaffold_51G00447840 Rroxscaffold_52G00439310 Rroxscaffold_52G00439390 Rroxscaffold_54G00443660 Rroxscaffold_55G00450020 Rroxscaffold_55G00450050 Rroxscaffold_55G00450060 Rroxscaffold_55G00450080 Rroxscaffold_55G00450090 Rroxscaffold_55G00450120 Rroxscaffold_57G00443070 Rroxscaffold_59G00442210 Rroxscaffold_59G00442220 Rroxscaffold_60G00448360 Rroxscaffold_60G00448370 Rroxscaffold_60G00448410 Rroxscaffold_61G00449990 Rroxscaffold_62G00438040 Rroxscaffold_62G00438060 Rroxscaffold_62G00438080 Rroxscaffold_63G00444410 Rroxscaffold_63G00444430 Rroxscaffold_64G00450670 Rroxscaffold_65G00445300 Rroxscaffold_65G00445340 Rroxscaffold_65G00445360 Rroxscaffold_65G00445380 Rroxscaffold_65G00445420 Rroxscaffold_66G00437660 Rroxscaffold_66G00437820 Rroxscaffold_66G00437840 Rroxscaffold_66G00437890 Rroxscaffold_67G00448140 Rroxscaffold_67G00448150 Rroxscaffold_68G00447010 Rroxscaffold_69G00446670 Rroxscaffold_69G00446710 Rroxscaffold_69G00446770 Rroxscaffold_6G00387820 Rroxscaffold_70G00446300 Rroxscaffold_70G00446340 Rroxscaffold_70G00446380 Rroxscaffold_71G00445590 Rroxscaffold_71G00445600 Rroxscaffold_71G00445630 Rroxscaffold_71G00445690 Rroxscaffold_71G00445720 Rroxscaffold_71G00445740 Rroxscaffold_71G00445770 Rroxscaffold_72G00449370 Rroxscaffold_72G00449410 Rroxscaffold_72G00449450 Rroxscaffold_73G00439000 Rroxscaffold_73G00439060 Rroxscaffold_73G00439160 Rroxscaffold_73G00439270 Rroxscaffold_74G00442920 Rroxscaffold_75G00447260 Rroxscaffold_75G00447290 Rroxscaffold_75G00447430 Rroxscaffold_76G00448540 Rroxscaffold_76G00448610 Rroxscaffold_77G00449150 Rroxscaffold_78G00449610 Rroxscaffold_79G00450210 Rroxscaffold_80G00450330 Rroxscaffold_80G00450350 Rroxscaffold_81G00450480 Rroxscaffold_83G00450980 Rroxscaffold_85G00451230 Rroxscaffold_86G00451270 Rroxscaffold_89G00451410 Rroxscaffold_90G00448760 Rroxscaffold_90G00448770 Rroxscaffold_90G00448820 Rroxscaffold_91G00443000 Rroxscaffold_91G00443060 Rroxscaffold_92G00446430 Rroxscaffold_93G00440830 Rroxscaffold_93G00440850 Rroxscaffold_93G00440860 Rroxscaffold_93G00440880 Rroxscaffold_93G00440910 Rroxscaffold_94G00445830 Rroxscaffold_94G00445910 Rroxscaffold_94G00445940 Rroxscaffold_94G00446020 Rroxscaffold_97G00442340 Rroxscaffold_97G00442390 Rroxscaffold_97G00442400 Rroxscaffold_98G00451350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 228
AccBSI CCGCTC 1 cut(s) 80
AccII CGCG 3 cut(s) 120, 176, 219
AciI CCGC 6 cut(s) 78, 83, 115, 118, 256, 264
AcoI YGGCCR 2 cut(s) 75, 159
AfiI CCNNNNNNNGG 5 cut(s) 161, 197, 238, 245, 312
AflII CTTAAG 1 cut(s) 179
AflIII ACRYGT 1 cut(s) 217
AgsI TTSAA 2 cut(s) 27, 41
AluBI AGCT 1 cut(s) 296
AluI AGCT 1 cut(s) 296
Alw21I GWGCWC 1 cut(s) 298
AoxI GGCC 5 cut(s) 20, 75, 138, 159, 283
ApeKI GCWGC 2 cut(s) 108, 326
AspLEI GCGC 3 cut(s) 122, 178, 186
AspS9I GGNCC 2 cut(s) 138, 284
AsuC2I CCSGG 1 cut(s) 239
BaeGI GKGCMC 1 cut(s) 231
BanI GGYRCC 1 cut(s) 228
BanII GRGCYC 1 cut(s) 298
BarI GAAGNNNNNNTAC 2 cut(s) 226, 258
Bbv12I GWGCWC 1 cut(s) 298
BbvI GCAGC 2 cut(s) 120, 338
BccI CCATC 1 cut(s) 195
BceAI ACGGC 3 cut(s) 90, 174, 319
BcnI CCSGG 1 cut(s) 239
BfaI CTAG 1 cut(s) 203
BfoI RGCGCY 1 cut(s) 187
BfrI CTTAAG 1 cut(s) 179
BglI GCCNNNNNGGC 1 cut(s) 158
BglII AGATCT 1 cut(s) 62
BisI GCNGC 5 cut(s) 78, 109, 118, 264, 327
BlsI GCNGC 5 cut(s) 79, 110, 119, 265, 328
Bme1390I CCNGG 1 cut(s) 239
BmgT120I GGNCC 2 cut(s) 138, 284
BmiI GGNNCC 3 cut(s) 6, 139, 230
BmrFI CCNGG 1 cut(s) 239
BmrI ACTGGG 1 cut(s) 92
BmsI GCATC 1 cut(s) 267
BmuI ACTGGG 1 cut(s) 92
BpuMI CCSGG 1 cut(s) 239
BsaJI CCNNGG 2 cut(s) 141, 306
BsaWI WCCGGW 1 cut(s) 245
BsaXI ACNNNNNCTCC 2 cut(s) 64, 94
Bsc4I CCNNNNNNNGG 5 cut(s) 161, 197, 238, 245, 312
Bse118I RCCGGY 2 cut(s) 85, 161
Bse1I ACTGG 1 cut(s) 98
BseDI CCNNGG 2 cut(s) 141, 306
BseGI GGATG 2 cut(s) 187, 251
BseLI CCNNNNNNNGG 5 cut(s) 161, 197, 238, 245, 312
BseNI ACTGG 1 cut(s) 98
BseSI GKGCMC 1 cut(s) 231
BseX3I CGGCCG 2 cut(s) 75, 159
BseXI GCAGC 2 cut(s) 120, 338
BsgI GTGCAG 1 cut(s) 51
Bsh1236I CGCG 3 cut(s) 120, 176, 219
Bsh1285I CGRYCG 3 cut(s) 78, 115, 162
BshFI GGCC 5 cut(s) 22, 77, 140, 161, 285
BshNI GGYRCC 1 cut(s) 228
BsiEI CGRYCG 3 cut(s) 78, 115, 162
BsiHKAI GWGCWC 1 cut(s) 298
BsiSI CCGG 4 cut(s) 86, 162, 239, 246
BslI CCNNNNNNNGG 5 cut(s) 161, 197, 238, 245, 312
BsnI GGCC 5 cut(s) 22, 77, 140, 161, 285
Bsp1286I GDGCHC 2 cut(s) 231, 298
Bsp143I GATC 1 cut(s) 62
BspACI CCGC 6 cut(s) 78, 83, 115, 118, 256, 264
BspANI GGCC 5 cut(s) 22, 77, 140, 161, 285
BspFNI CGCG 3 cut(s) 120, 176, 219
BspLI GGNNCC 3 cut(s) 6, 139, 230
BspT107I GGYRCC 1 cut(s) 228
BspTI CTTAAG 1 cut(s) 179
BsrBI CCGCTC 1 cut(s) 80
BsrFI RCCGGY 2 cut(s) 85, 161
BsrI ACTGG 1 cut(s) 98
BssAI RCCGGY 2 cut(s) 85, 161
BssECI CCNNGG 2 cut(s) 141, 306
BssMI GATC 1 cut(s) 62
BssT1I CCWWGG 1 cut(s) 306
Bst4CI ACNGT 1 cut(s) 233
Bst6I CTCTTC 1 cut(s) 21
BstAFI CTTAAG 1 cut(s) 179
BstC8I GCNNGC 2 cut(s) 87, 217
BstF5I GGATG 2 cut(s) 187, 251
BstFNI CGCG 3 cut(s) 120, 176, 219
BstH2I RGCGCY 1 cut(s) 187
BstHHI GCGC 3 cut(s) 122, 178, 186
BstKTI GATC 1 cut(s) 65
BstMBI GATC 1 cut(s) 62
BstMCI CGRYCG 3 cut(s) 78, 115, 162
BstMWI GCNNNNNNNGC 5 cut(s) 74, 86, 114, 117, 158
BstSCI CCNGG 1 cut(s) 237
BstSLI GKGCMC 1 cut(s) 231
BstUI CGCG 3 cut(s) 120, 176, 219
BstV1I GCAGC 2 cut(s) 120, 338
BstX2I RGATCY 1 cut(s) 62
BstYI RGATCY 1 cut(s) 62
BstZI CGGCCG 2 cut(s) 75, 159
BsuRI GGCC 5 cut(s) 22, 77, 140, 161, 285
BtgZI GCGATG 1 cut(s) 244
BtsCI GGATG 2 cut(s) 187, 251
BtsIMutI CAGTG 1 cut(s) 105
Cac8I GCNNGC 2 cut(s) 87, 217
CfoI GCGC 3 cut(s) 122, 178, 186
Cfr10I RCCGGY 2 cut(s) 85, 161
Cfr13I GGNCC 2 cut(s) 138, 284
DpnI GATC 1 cut(s) 64
DpnII GATC 1 cut(s) 62
DraI TTTAAA 1 cut(s) 349
EaeI YGGCCR 2 cut(s) 75, 159
EagI CGGCCG 2 cut(s) 75, 159
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
EciI GGCGGA 1 cut(s) 72
Ecl136II GAGCTC 1 cut(s) 296
EclXI CGGCCG 2 cut(s) 75, 159
Eco130I CCWWGG 1 cut(s) 306
Eco24I GRGCYC 1 cut(s) 298
Eco52I CGGCCG 2 cut(s) 75, 159
Eco53kI GAGCTC 1 cut(s) 296
EcoICRI GAGCTC 1 cut(s) 296
EcoO109I RGGNCCY 1 cut(s) 138
EcoT14I CCWWGG 1 cut(s) 306
EcoT38I GRGCYC 1 cut(s) 298
ErhI CCWWGG 1 cut(s) 306
FaiI YATR 1 cut(s) 167
FauI CCCGC 1 cut(s) 263
Fnu4HI GCNGC 5 cut(s) 78, 109, 118, 264, 327
FokI GGATG 2 cut(s) 174, 238
FriOI GRGCYC 1 cut(s) 298
Fsp4HI GCNGC 5 cut(s) 78, 109, 118, 264, 327
FspBI CTAG 1 cut(s) 203
GlaI GCGC 3 cut(s) 121, 177, 185
GluI GCNGC 5 cut(s) 78, 109, 118, 264, 327
HaeII RGCGCY 1 cut(s) 187
HaeIII GGCC 5 cut(s) 22, 77, 140, 161, 285
HapII CCGG 4 cut(s) 86, 162, 239, 246
HhaI GCGC 3 cut(s) 122, 178, 186
Hin6I GCGC 3 cut(s) 120, 176, 184
HinP1I GCGC 3 cut(s) 120, 176, 184
HinfI GANTC 2 cut(s) 209, 302
HpaII CCGG 4 cut(s) 86, 162, 239, 246
Hpy188III TCNNGA 1 cut(s) 299
Hpy99I CGWCG 2 cut(s) 76, 160
HpyAV CCTTC 1 cut(s) 33
HpyCH4III ACNGT 1 cut(s) 233
HpyCH4V TGCA 2 cut(s) 68, 108
HpyF10VI GCNNNNNNNGC 5 cut(s) 74, 86, 114, 117, 158
HspAI GCGC 3 cut(s) 120, 176, 184
KroI GCCGGC 1 cut(s) 85
KroNI GCCGGC 1 cut(s) 87
Kzo9I GATC 1 cut(s) 62
LmnI GCTCC 2 cut(s) 85, 293
LpnPI CCDG 5 cut(s) 99, 111, 175, 252, 259
Lsp1109I GCAGC 2 cut(s) 120, 338
LweI GCATC 1 cut(s) 267
MaeI CTAG 1 cut(s) 203
MaeIII GTNAC 2 cut(s) 170, 233
MalI GATC 1 cut(s) 64
MbiI CCGCTC 1 cut(s) 80
MboI GATC 1 cut(s) 62
MboII GAAGA 1 cut(s) 8
MflI RGATCY 1 cut(s) 62
MhlI GDGCHC 2 cut(s) 231, 298
MluI ACGCGT 1 cut(s) 217
MnlI CCTC 4 cut(s) 24, 134, 151, 277
MroNI GCCGGC 1 cut(s) 85
MseI TTAA 2 cut(s) 180, 348
MspCI CTTAAG 1 cut(s) 179
MspI CCGG 4 cut(s) 86, 162, 239, 246
MspR9I CCNGG 1 cut(s) 239
MvnI CGCG 3 cut(s) 120, 176, 219
MwoI GCNNNNNNNGC 5 cut(s) 74, 86, 114, 117, 158
NaeI GCCGGC 1 cut(s) 87
NciI CCSGG 1 cut(s) 239
NdeII GATC 1 cut(s) 62
NgoMIV GCCGGC 1 cut(s) 85
NlaIV GGNNCC 3 cut(s) 6, 139, 230
NmeAIII GCCGAG 1 cut(s) 122
NmuCI GTSAC 1 cut(s) 170
PdiI GCCGGC 1 cut(s) 87
PfeI GAWTC 2 cut(s) 209, 302
PkrI GCNGC 5 cut(s) 79, 110, 119, 265, 328
Psp124BI GAGCTC 1 cut(s) 298
PspN4I GGNNCC 3 cut(s) 6, 139, 230
PspPI GGNCC 2 cut(s) 138, 284
PsuI RGATCY 1 cut(s) 62
SacI GAGCTC 1 cut(s) 298
SaqAI TTAA 2 cut(s) 180, 348
SatI GCNGC 5 cut(s) 78, 109, 118, 264, 327
Sau3AI GATC 1 cut(s) 62
Sau96I GGNCC 2 cut(s) 138, 284
ScrFI CCNGG 1 cut(s) 239
SduI GDGCHC 2 cut(s) 231, 298
SetI ASST 4 cut(s) 10, 172, 298, 345
SfaNI GCATC 1 cut(s) 267
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
SsiI CCGC 6 cut(s) 78, 83, 115, 118, 256, 264
SspI AATATT 1 cut(s) 44
SspMI CTAG 1 cut(s) 203
SstI GAGCTC 1 cut(s) 298
StyD4I CCNGG 1 cut(s) 237
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 1 cut(s) 233
TaqI TCGA 1 cut(s) 300
TauI GCSGC 3 cut(s) 80, 120, 266
TfiI GAWTC 2 cut(s) 209, 302
Tru1I TTAA 2 cut(s) 180, 348
Tru9I TTAA 2 cut(s) 180, 348
TscAI CASTG 1 cut(s) 105
TseFI GTSAC 1 cut(s) 170
TseI GCWGC 2 cut(s) 108, 326
Tsp45I GTSAC 1 cut(s) 170
TspDTI ATGAA 1 cut(s) 240
TspRI CASTG 1 cut(s) 105
Vha464I CTTAAG 1 cut(s) 179
XspI CTAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.