Rroxscaffold_22G00439950

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000022
OG0000098
Physical Location & Seq
Reverse (-)
103198 .. 104916
1719 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_22G00439950.1

Sequence Viewer

Length: 813 bp
ATGGAAGGGGGAGGGACGAATCGAAGCGACGCAGGGCTGAATCTCGTGGATCGTGGCAGCAAGGCCACTCTGCCACTTACAATACCCCGTCGCGTATTTAAGTCGTCTGCAAAGGATTCTACCCGCCGCTCGGTAGAAATTGTAATTCAAGGCGGCCCTCGCAGCTTGTCTGCTGTGAGGGCTTCACCAACGACACGTGCCTTTGGGGGCCTAGGGCCCCTACTGCGGGTCGGCAATCGGACGGCGGGCGCATGCGTCGCTTCTAGCCCGGATTCTGACTTAGAGGCGTTCAATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCGGATCAGCCCGCCGAAGCAGGCTTTGGTCGGATTCCCCTTGTCCGTACCAGTTCTGAGTCGACTGTTGAACGCCCGGGGAAAGCCCCCGAAGGAGCGTTCCCAGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGCGGAAGCAGCTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGACCCCCGTGCCCAGCCCTCGAGCCAATCCTTTTCCCGAGGTTACGGATCCATTTTGCCGACTTCCCTTGCCTACATTGTTCCATTGACCAGAGGCTGTTCACCTTGGAGACCTGATGCGGTTATGAGTACGACCGGGCGTGAATGGCACTCGGTCCTCCGGATTTTCAAGGGCCGCCGGGGGCGCACCGGACACCACGCGACGTGCGGTGCTCTTCCAGCCGCTGGACCCTACCTCCGGCTGAGCCGTTTCCAGGGTGGGCAGGCTGTTAAACAGAAAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

270

Amino Acids

29.21

Weight (kDa)

11.64

Isoelectric Point (pI)

65.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000098)

Species Orthologous Gene IDs
pyrus_communis pycom05g23460 pycom581g00100 pycom849g00040
rosa_multiflora Rmu_sc0019961.1_g000001
rosa_roxburghii Rroxscaffold_100G00451180 Rroxscaffold_102G00450890 Rroxscaffold_102G00450920 Rroxscaffold_103G00450530 Rroxscaffold_103G00450560 Rroxscaffold_104G00444830 Rroxscaffold_104G00444900 Rroxscaffold_105G00447100 Rroxscaffold_105G00447180 Rroxscaffold_107G00442470 Rroxscaffold_107G00442480 Rroxscaffold_107G00442520 Rroxscaffold_107G00442540 Rroxscaffold_107G00442560 Rroxscaffold_107G00442570 Rroxscaffold_107G00442600 Rroxscaffold_107G00442630 Rroxscaffold_107G00442650 Rroxscaffold_107G00442660 Rroxscaffold_108G00451480 Rroxscaffold_110G00451510 Rroxscaffold_111G00451550 Rroxscaffold_112G00451590 Rroxscaffold_113G00451630 Rroxscaffold_114G00451650 Rroxscaffold_116G00451710 Rroxscaffold_117G00451740 Rroxscaffold_117G00451750 Rroxscaffold_121G00451840 Rroxscaffold_122G00451860 Rroxscaffold_122G00451880 Rroxscaffold_123G00451920 Rroxscaffold_124G00451950 Rroxscaffold_128G00452040 Rroxscaffold_128G00452060 Rroxscaffold_12G00450600 Rroxscaffold_12G00450620 Rroxscaffold_131G00452110 Rroxscaffold_138G00452180 Rroxscaffold_13G00448630 Rroxscaffold_145G00452240 Rroxscaffold_14G00441930 Rroxscaffold_14G00441950 Rroxscaffold_14G00442050 Rroxscaffold_14G00442080 Rroxscaffold_15G00447500 Rroxscaffold_162G00450770 Rroxscaffold_16G00446200 Rroxscaffold_16G00446210 Rroxscaffold_16G00446240 Rroxscaffold_17G00435360 Rroxscaffold_17G00435410 Rroxscaffold_17G00435450 Rroxscaffold_17G00435480 Rroxscaffold_17G00435500 Rroxscaffold_17G00435600 Rroxscaffold_17G00435660 Rroxscaffold_17G00435680 Rroxscaffold_17G00435760 Rroxscaffold_17G00435780 Rroxscaffold_17G00435810 Rroxscaffold_17G00435840 Rroxscaffold_17G00435870 Rroxscaffold_18G00446030 Rroxscaffold_18G00446060 Rroxscaffold_18G00446130 Rroxscaffold_19G00448890 Rroxscaffold_19G00448920 Rroxscaffold_19G00448940 Rroxscaffold_19G00448970 Rroxscaffold_1G00000020 Rroxscaffold_1G00000050 Rroxscaffold_1G00000160 Rroxscaffold_20G00445060 Rroxscaffold_20G00445100 Rroxscaffold_20G00445130 Rroxscaffold_21G00439490 Rroxscaffold_21G00439560 Rroxscaffold_21G00439580 Rroxscaffold_21G00439620 Rroxscaffold_21G00439630 Rroxscaffold_22G00439910 Rroxscaffold_22G00439950 Rroxscaffold_23G00451020 Rroxscaffold_23G00451040 Rroxscaffold_23G00451070 Rroxscaffold_24G00444920 Rroxscaffold_24G00444950 Rroxscaffold_24G00445000 Rroxscaffold_25G00450200 Rroxscaffold_26G00447730 Rroxscaffold_27G00446570 Rroxscaffold_27G00446600 Rroxscaffold_28G00446830 Rroxscaffold_28G00446860 Rroxscaffold_28G00446910 Rroxscaffold_29G00441560 Rroxscaffold_29G00441570 Rroxscaffold_29G00441590 Rroxscaffold_29G00441630 Rroxscaffold_29G00441640 Rroxscaffold_29G00441670 Rroxscaffold_29G00441680 Rroxscaffold_29G00441860 Rroxscaffold_30G00449540 Rroxscaffold_30G00449570 Rroxscaffold_30G00449580 Rroxscaffold_31G00438120 Rroxscaffold_31G00438140 Rroxscaffold_31G00438180 Rroxscaffold_31G00438190 Rroxscaffold_31G00438220 Rroxscaffold_31G00438230 Rroxscaffold_32G00442740 Rroxscaffold_32G00442760 Rroxscaffold_33G00439670 Rroxscaffold_33G00439720 Rroxscaffold_33G00439740 Rroxscaffold_33G00439760 Rroxscaffold_33G00439820 Rroxscaffold_34G00443140 Rroxscaffold_34G00443200 Rroxscaffold_34G00443250 Rroxscaffold_34G00443370 Rroxscaffold_34G00443390 Rroxscaffold_35G00441050 Rroxscaffold_35G00441080 Rroxscaffold_35G00441090 Rroxscaffold_35G00441170 Rroxscaffold_35G00441190 Rroxscaffold_35G00441230 Rroxscaffold_36G00440100 Rroxscaffold_36G00440170 Rroxscaffold_37G00445170 Rroxscaffold_38G00444440 Rroxscaffold_38G00444500 Rroxscaffold_38G00444550 Rroxscaffold_39G00448200 Rroxscaffold_39G00448210 Rroxscaffold_40G00447650 Rroxscaffold_40G00447680 Rroxscaffold_40G00447700 Rroxscaffold_40G00447710 Rroxscaffold_41G00451110 Rroxscaffold_41G00451130 Rroxscaffold_42G00450430 Rroxscaffold_43G00449800 Rroxscaffold_43G00449860 Rroxscaffold_43G00449920 Rroxscaffold_43G00449930 Rroxscaffold_44G00440540 Rroxscaffold_44G00440580 Rroxscaffold_44G00440660 Rroxscaffold_45G00438900 Rroxscaffold_45G00438930 Rroxscaffold_45G00438950 Rroxscaffold_47G00444020 Rroxscaffold_47G00444060 Rroxscaffold_47G00444120 Rroxscaffold_48G00448450 Rroxscaffold_49G00438570 Rroxscaffold_49G00438650 Rroxscaffold_49G00438700 Rroxscaffold_4G00321080 Rroxscaffold_50G00444130 Rroxscaffold_50G00444200 Rroxscaffold_50G00444210 Rroxscaffold_50G00444330 Rroxscaffold_50G00444350 Rroxscaffold_51G00447840 Rroxscaffold_52G00439310 Rroxscaffold_52G00439390 Rroxscaffold_54G00443660 Rroxscaffold_55G00450020 Rroxscaffold_55G00450050 Rroxscaffold_55G00450060 Rroxscaffold_55G00450080 Rroxscaffold_55G00450090 Rroxscaffold_55G00450120 Rroxscaffold_57G00443070 Rroxscaffold_59G00442210 Rroxscaffold_59G00442220 Rroxscaffold_60G00448360 Rroxscaffold_60G00448370 Rroxscaffold_60G00448410 Rroxscaffold_61G00449990 Rroxscaffold_62G00438040 Rroxscaffold_62G00438060 Rroxscaffold_62G00438080 Rroxscaffold_63G00444410 Rroxscaffold_63G00444430 Rroxscaffold_64G00450670 Rroxscaffold_65G00445300 Rroxscaffold_65G00445340 Rroxscaffold_65G00445360 Rroxscaffold_65G00445380 Rroxscaffold_65G00445420 Rroxscaffold_66G00437660 Rroxscaffold_66G00437820 Rroxscaffold_66G00437840 Rroxscaffold_66G00437890 Rroxscaffold_67G00448140 Rroxscaffold_67G00448150 Rroxscaffold_68G00447010 Rroxscaffold_69G00446670 Rroxscaffold_69G00446710 Rroxscaffold_69G00446770 Rroxscaffold_6G00387820 Rroxscaffold_70G00446300 Rroxscaffold_70G00446340 Rroxscaffold_70G00446380 Rroxscaffold_71G00445590 Rroxscaffold_71G00445600 Rroxscaffold_71G00445630 Rroxscaffold_71G00445690 Rroxscaffold_71G00445720 Rroxscaffold_71G00445740 Rroxscaffold_71G00445770 Rroxscaffold_72G00449370 Rroxscaffold_72G00449410 Rroxscaffold_72G00449450 Rroxscaffold_73G00439000 Rroxscaffold_73G00439060 Rroxscaffold_73G00439160 Rroxscaffold_73G00439270 Rroxscaffold_74G00442920 Rroxscaffold_75G00447260 Rroxscaffold_75G00447290 Rroxscaffold_75G00447430 Rroxscaffold_76G00448540 Rroxscaffold_76G00448610 Rroxscaffold_77G00449150 Rroxscaffold_78G00449610 Rroxscaffold_79G00450210 Rroxscaffold_80G00450330 Rroxscaffold_80G00450350 Rroxscaffold_81G00450480 Rroxscaffold_83G00450980 Rroxscaffold_85G00451230 Rroxscaffold_86G00451270 Rroxscaffold_89G00451410 Rroxscaffold_90G00448760 Rroxscaffold_90G00448770 Rroxscaffold_90G00448820 Rroxscaffold_91G00443000 Rroxscaffold_91G00443060 Rroxscaffold_92G00446430 Rroxscaffold_93G00440830 Rroxscaffold_93G00440850 Rroxscaffold_93G00440860 Rroxscaffold_93G00440880 Rroxscaffold_93G00440910 Rroxscaffold_94G00445830 Rroxscaffold_94G00445910 Rroxscaffold_94G00445940 Rroxscaffold_94G00446020 Rroxscaffold_97G00442340 Rroxscaffold_97G00442390 Rroxscaffold_97G00442400 Rroxscaffold_98G00451350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 752
AccBSI CCGCTC 2 cut(s) 129, 472
AccI GTMKAC 1 cut(s) 397
AccII CGCG 4 cut(s) 93, 462, 481, 728
AccIII TCCGGA 1 cut(s) 687
AclWI GGATC 4 cut(s) 57, 347, 570, 583
AcoI YGGCCR 1 cut(s) 452
AcvI CACGTG 1 cut(s) 197
AfaI GTAC 2 cut(s) 384, 658
AfiI CCNNNNNNNGG 9 cut(s) 130, 225, 226, 450, 454, 461, 752, 765, 781
AflIII ACRYGT 1 cut(s) 194
AgsI TTSAA 4 cut(s) 149, 292, 406, 697
AjiI CACGTC 1 cut(s) 732
AjnI CCWGG 1 cut(s) 780
AjuI GAANNNNNNNTTGG 2 cut(s) 344, 376
AluBI AGCT 2 cut(s) 165, 490
AluI AGCT 2 cut(s) 165, 490
Alw21I GWGCWC 1 cut(s) 742
Alw26I GTCTC 1 cut(s) 631
AlwI GGATC 4 cut(s) 57, 347, 570, 583
AlwNI CAGNNNCTG 2 cut(s) 624, 752
Ama87I CYCGRG 4 cut(s) 411, 491, 547, 564
Aor13HI TCCGGA 1 cut(s) 687
AoxI GGCC 6 cut(s) 63, 154, 208, 215, 452, 700
ApaI GGGCCC 1 cut(s) 219
ApeKI GCWGC 3 cut(s) 57, 162, 487
AspA2I CCTAGG 1 cut(s) 211
AspLEI GCGC 2 cut(s) 251, 714
AspS9I GGNCC 8 cut(s) 155, 208, 215, 216, 529, 682, 700, 755
AsuC2I CCSGG 6 cut(s) 269, 412, 413, 451, 664, 707
AsuHPI GGTGA 3 cut(s) 177, 493, 621
AvaI CYCGRG 4 cut(s) 411, 491, 547, 564
AvaII GGWCC 3 cut(s) 529, 682, 755
AvrII CCTAGG 1 cut(s) 211
BaeGI GKGCMC 2 cut(s) 219, 541
BamHI GGATCC 1 cut(s) 575
BanII GRGCYC 1 cut(s) 219
BauI CACGAG 1 cut(s) 44
BbrPI CACGTG 1 cut(s) 197
BbsI GAAGAC 1 cut(s) 322
Bbv12I GWGCWC 1 cut(s) 742
BbvI GCAGC 3 cut(s) 69, 174, 499
BceAI ACGGC 2 cut(s) 258, 759
BciT130I CCWGG 1 cut(s) 782
BcnI CCSGG 6 cut(s) 269, 412, 413, 451, 664, 707
BcoDI GTCTC 1 cut(s) 631
BfaI CTAG 2 cut(s) 212, 264
BlnI CCTAGG 1 cut(s) 211
BlpI GCTNAGC 1 cut(s) 770
Bme1390I CCNGG 7 cut(s) 269, 412, 413, 451, 664, 707, 782
Bme18I GGWCC 3 cut(s) 529, 682, 755
BmeT110I CYCGRG 4 cut(s) 411, 491, 547, 564
BmgBI CACGTC 1 cut(s) 732
BmgT120I GGNCC 8 cut(s) 155, 208, 215, 216, 529, 682, 700, 755
BmiI GGNNCC 7 cut(s) 209, 217, 218, 530, 531, 577, 757
BmrFI CCNGG 7 cut(s) 269, 412, 413, 451, 664, 707, 782
BmrI ACTGGG 2 cut(s) 433, 535
BmsI GCATC 1 cut(s) 634
BmuI ACTGGG 2 cut(s) 433, 535
BpiI GAAGAC 1 cut(s) 322
Bpu1102I GCTNAGC 1 cut(s) 770
BpuMI CCSGG 6 cut(s) 269, 412, 413, 451, 664, 707
BsaAI YACGTR 1 cut(s) 197
BsaI GGTCTC 1 cut(s) 631
BsaJI CCNNGG 9 cut(s) 211, 411, 412, 449, 479, 565, 632, 706, 781
BsaWI WCCGGW 2 cut(s) 687, 716
BsaXI ACNNNNNCTCC 2 cut(s) 747, 777
Bsc4I CCNNNNNNNGG 9 cut(s) 130, 225, 226, 450, 454, 461, 752, 765, 781
Bse118I RCCGGY 1 cut(s) 454
Bse1I ACTGG 3 cut(s) 386, 439, 530
BseAI TCCGGA 1 cut(s) 687
BseBI CCWGG 1 cut(s) 782
BseDI CCNNGG 9 cut(s) 211, 411, 412, 449, 479, 565, 632, 706, 781
BseLI CCNNNNNNNGG 9 cut(s) 130, 225, 226, 450, 454, 461, 752, 765, 781
BseMII CTCAG 2 cut(s) 383, 761
BseNI ACTGG 3 cut(s) 386, 439, 530
BseSI GKGCMC 2 cut(s) 219, 541
BseX3I CGGCCG 1 cut(s) 452
BseXI GCAGC 3 cut(s) 69, 174, 499
BseYI CCCAGC 2 cut(s) 303, 540
Bsh1236I CGCG 4 cut(s) 93, 462, 481, 728
Bsh1285I CGRYCG 2 cut(s) 455, 663
BshFI GGCC 6 cut(s) 65, 156, 210, 217, 454, 702
BsiEI CGRYCG 2 cut(s) 455, 663
BsiHKAI GWGCWC 1 cut(s) 742
BsiHKCI CYCGRG 4 cut(s) 411, 491, 547, 564
BslFI GGGAC 4 cut(s) 28, 431, 536, 542
BslI CCNNNNNNNGG 9 cut(s) 130, 225, 226, 450, 454, 461, 752, 765, 781
BsmAI GTCTC 1 cut(s) 631
BsmFI GGGAC 4 cut(s) 28, 431, 536, 542
BsnI GGCC 6 cut(s) 65, 156, 210, 217, 454, 702
Bso31I GGTCTC 1 cut(s) 631
BsoBI CYCGRG 4 cut(s) 411, 491, 547, 564
Bsp120I GGGCCC 1 cut(s) 215
Bsp1286I GDGCHC 3 cut(s) 219, 541, 742
Bsp13I TCCGGA 1 cut(s) 687
Bsp143I GATC 3 cut(s) 49, 339, 575
Bsp1720I GCTNAGC 1 cut(s) 770
BspANI GGCC 6 cut(s) 65, 156, 210, 217, 454, 702
BspCNI CTCAG 2 cut(s) 384, 762
BspEI TCCGGA 1 cut(s) 687
BspFNI CGCG 4 cut(s) 93, 462, 481, 728
BspLI GGNNCC 7 cut(s) 209, 217, 218, 530, 531, 577, 757
BspPI GGATC 4 cut(s) 57, 347, 570, 583
BspQI GCTCTTC 1 cut(s) 747
BspTNI GGTCTC 1 cut(s) 631
BsrBI CCGCTC 2 cut(s) 129, 472
BsrFI RCCGGY 1 cut(s) 454
BsrI ACTGG 3 cut(s) 386, 439, 530
BssAI RCCGGY 1 cut(s) 454
BssECI CCNNGG 9 cut(s) 211, 411, 412, 449, 479, 565, 632, 706, 781
BssMI GATC 3 cut(s) 49, 339, 575
BssSI CACGAG 1 cut(s) 44
BssT1I CCWWGG 2 cut(s) 211, 632
Bst2BI CACGAG 1 cut(s) 44
Bst2UI CCWGG 1 cut(s) 782
Bst4CI ACNGT 1 cut(s) 402
Bst6I CTCTTC 1 cut(s) 747
BstBAI YACGTR 1 cut(s) 197
BstC8I GCNNGC 7 cut(s) 247, 253, 347, 357, 456, 460, 792
BstDEI CTNAG 3 cut(s) 280, 392, 770
BstDSI CCRYGG 1 cut(s) 479
BstFNI CGCG 4 cut(s) 93, 462, 481, 728
BstHHI GCGC 2 cut(s) 251, 714
BstKTI GATC 3 cut(s) 52, 342, 578
BstMAI GTCTC 1 cut(s) 631
BstMBI GATC 3 cut(s) 49, 339, 575
BstMCI CGRYCG 2 cut(s) 455, 663
BstNI CCWGG 1 cut(s) 782
BstNSI RCATGY 1 cut(s) 255
BstSCI CCNGG 7 cut(s) 267, 410, 411, 449, 662, 705, 780
BstSLI GKGCMC 2 cut(s) 219, 541
BstUI CGCG 4 cut(s) 93, 462, 481, 728
BstV1I GCAGC 3 cut(s) 69, 174, 499
BstV2I GAAGAC 1 cut(s) 322
BstX2I RGATCY 1 cut(s) 575
BstYI RGATCY 1 cut(s) 575
BstZI CGGCCG 1 cut(s) 452
BsuRI GGCC 6 cut(s) 65, 156, 210, 217, 454, 702
BtgI CCRYGG 1 cut(s) 479
BtrI CACGTC 1 cut(s) 732
Cac8I GCNNGC 7 cut(s) 247, 253, 347, 357, 456, 460, 792
CaiI CAGNNNCTG 2 cut(s) 624, 752
CfoI GCGC 2 cut(s) 251, 714
Cfr10I RCCGGY 1 cut(s) 454
Cfr13I GGNCC 8 cut(s) 155, 208, 215, 216, 529, 682, 700, 755
Cfr42I CCGCGG 1 cut(s) 482
Cfr9I CCCGGG 1 cut(s) 411
CseI GACGC 2 cut(s) 38, 244
Csp6I GTAC 2 cut(s) 383, 657
CviAII CATG 1 cut(s) 252
CviQI GTAC 2 cut(s) 383, 657
DdeI CTNAG 3 cut(s) 280, 392, 770
DpnI GATC 3 cut(s) 51, 341, 577
DpnII GATC 3 cut(s) 49, 339, 575
EaeI YGGCCR 1 cut(s) 452
EagI CGGCCG 1 cut(s) 452
Eam1104I CTCTTC 1 cut(s) 747
EarI CTCTTC 1 cut(s) 747
EciI GGCGGA 1 cut(s) 323
EclXI CGGCCG 1 cut(s) 452
Eco130I CCWWGG 2 cut(s) 211, 632
Eco24I GRGCYC 1 cut(s) 219
Eco31I GGTCTC 1 cut(s) 631
Eco47I GGWCC 3 cut(s) 529, 682, 755
Eco52I CGGCCG 1 cut(s) 452
Eco72I CACGTG 1 cut(s) 197
Eco88I CYCGRG 4 cut(s) 411, 491, 547, 564
EcoO109I RGGNCCY 4 cut(s) 208, 215, 216, 529
EcoRII CCWGG 1 cut(s) 780
EcoT14I CCWWGG 2 cut(s) 211, 632
EcoT38I GRGCYC 1 cut(s) 219
ErhI CCWWGG 2 cut(s) 211, 632
FaeI CATG 1 cut(s) 255
FaiI YATR 2 cut(s) 253, 653
FaqI GGGAC 4 cut(s) 28, 431, 536, 542
FatI CATG 1 cut(s) 251
FauI CCCGC 5 cut(s) 131, 219, 238, 354, 477
FblI GTMKAC 1 cut(s) 397
FriOI GRGCYC 1 cut(s) 219
FspBI CTAG 2 cut(s) 212, 264
GlaI GCGC 2 cut(s) 250, 713
GsaI CCCAGC 2 cut(s) 307, 544
HaeIII GGCC 6 cut(s) 65, 156, 210, 217, 454, 702
HgaI GACGC 2 cut(s) 38, 244
HhaI GCGC 2 cut(s) 251, 714
Hin1II CATG 1 cut(s) 255
Hin6I GCGC 2 cut(s) 249, 712
HinP1I GCGC 2 cut(s) 249, 712
HincII GTYRAC 1 cut(s) 398
HindII GTYRAC 1 cut(s) 398
HinfI GANTC 6 cut(s) 19, 40, 116, 272, 369, 394
HphI GGTGA 3 cut(s) 177, 493, 621
Hpy166II GTNNAC 3 cut(s) 398, 501, 629
Hpy188I TCNGA 4 cut(s) 240, 277, 368, 393
Hpy188III TCNNGA 3 cut(s) 521, 564, 688
Hpy8I GTNNAC 3 cut(s) 398, 501, 629
Hpy99I CGWCG 5 cut(s) 32, 93, 260, 516, 733
HpyAV CCTTC 1 cut(s) 421
HpyCH4III ACNGT 1 cut(s) 402
HpyCH4IV ACGT 2 cut(s) 196, 731
HpyCH4V TGCA 1 cut(s) 110
HpyF3I CTNAG 3 cut(s) 280, 392, 770
HpySE526I ACGT 2 cut(s) 196, 731
Hsp92II CATG 1 cut(s) 255
HspAI GCGC 2 cut(s) 249, 712
KflI GGGWCCC 1 cut(s) 529
Kpn2I TCCGGA 1 cut(s) 687
KroI GCCGGC 1 cut(s) 454
KroNI GCCGGC 1 cut(s) 456
KspI CCGCGG 1 cut(s) 482
Kzo9I GATC 3 cut(s) 49, 339, 575
LguI GCTCTTC 1 cut(s) 747
LmnI GCTCC 1 cut(s) 430
Lsp1109I GCAGC 3 cut(s) 69, 174, 499
LweI GCATC 1 cut(s) 634
MaeI CTAG 2 cut(s) 212, 264
MaeII ACGT 2 cut(s) 196, 731
MaeIII GTNAC 1 cut(s) 569
MalI GATC 3 cut(s) 51, 341, 577
MbiI CCGCTC 2 cut(s) 129, 472
MboI GATC 3 cut(s) 49, 339, 575
MboII GAAGA 2 cut(s) 322, 734
MflI RGATCY 1 cut(s) 575
MhlI GDGCHC 3 cut(s) 219, 541, 742
MluCI AATT 2 cut(s) 138, 144
MlyI GAGTC 1 cut(s) 403
MmeI TCCRAC 1 cut(s) 346
MnlI CCTC 9 cut(s) 5, 168, 171, 277, 556, 560, 614, 695, 773
MroI TCCGGA 1 cut(s) 687
MroNI GCCGGC 1 cut(s) 454
MseI TTAA 2 cut(s) 99, 798
MspA1I CMGCKG 2 cut(s) 481, 752
MspR9I CCNGG 7 cut(s) 269, 412, 413, 451, 664, 707, 782
MvaI CCWGG 1 cut(s) 782
MvnI CGCG 4 cut(s) 93, 462, 481, 728
NaeI GCCGGC 1 cut(s) 456
NciI CCSGG 6 cut(s) 269, 412, 413, 451, 664, 707
NdeII GATC 3 cut(s) 49, 339, 575
NgoMIV GCCGGC 1 cut(s) 454
NlaIII CATG 1 cut(s) 255
NlaIV GGNNCC 7 cut(s) 209, 217, 218, 530, 531, 577, 757
NspI RCATGY 1 cut(s) 255
PaeI GCATGC 1 cut(s) 255
PaeR7I CTCGAG 2 cut(s) 491, 547
PciSI GCTCTTC 1 cut(s) 747
PdiI GCCGGC 1 cut(s) 456
PfeI GAWTC 5 cut(s) 19, 40, 116, 272, 369
PflFI GACNNNGTC 1 cut(s) 326
PflMI CCANNNNNTGG 1 cut(s) 752
PleI GAGTC 1 cut(s) 402
PmaCI CACGTG 1 cut(s) 197
PmlI CACGTG 1 cut(s) 197
PpsI GAGTC 1 cut(s) 402
Ppu21I YACGTR 1 cut(s) 197
PpuMI RGGWCCY 1 cut(s) 529
Psp5II RGGWCCY 1 cut(s) 529
Psp6I CCWGG 1 cut(s) 780
PspCI CACGTG 1 cut(s) 197
PspFI CCCAGC 2 cut(s) 303, 540
PspGI CCWGG 1 cut(s) 780
PspN4I GGNNCC 7 cut(s) 209, 217, 218, 530, 531, 577, 757
PspOMI GGGCCC 1 cut(s) 215
PspPI GGNCC 8 cut(s) 155, 208, 215, 216, 529, 682, 700, 755
PspPPI RGGWCCY 1 cut(s) 529
PspXI VCTCGAGB 2 cut(s) 491, 547
PstNI CAGNNNCTG 2 cut(s) 624, 752
PsuI RGATCY 1 cut(s) 575
PsyI GACNNNGTC 1 cut(s) 326
RsaI GTAC 2 cut(s) 384, 658
RsaNI GTAC 2 cut(s) 383, 657
SacII CCGCGG 1 cut(s) 482
SalI GTCGAC 1 cut(s) 396
SapI GCTCTTC 1 cut(s) 747
SaqAI TTAA 2 cut(s) 99, 798
Sau3AI GATC 3 cut(s) 49, 339, 575
Sau96I GGNCC 8 cut(s) 155, 208, 215, 216, 529, 682, 700, 755
SchI GAGTC 1 cut(s) 403
ScrFI CCNGG 7 cut(s) 269, 412, 413, 451, 664, 707, 782
SduI GDGCHC 3 cut(s) 219, 541, 742
SetI ASST 9 cut(s) 167, 199, 322, 492, 571, 634, 643, 734, 765
SfaNI GCATC 1 cut(s) 634
Sfr274I CTCGAG 2 cut(s) 491, 547
Sfr303I CCGCGG 1 cut(s) 482
SgrBI CCGCGG 1 cut(s) 482
SinI GGWCC 3 cut(s) 529, 682, 755
SlaI CTCGAG 2 cut(s) 491, 547
SmaI CCCGGG 1 cut(s) 413
SmlI CTYRAG 2 cut(s) 491, 547
SmoI CTYRAG 2 cut(s) 491, 547
SphI GCATGC 1 cut(s) 255
Sse9I AATT 2 cut(s) 138, 144
SspMI CTAG 2 cut(s) 212, 264
StyD4I CCNGG 7 cut(s) 267, 410, 411, 449, 662, 705, 780
StyI CCWWGG 2 cut(s) 211, 632
TaaI ACNGT 1 cut(s) 402
TaiI ACGT 2 cut(s) 199, 734
TaqI TCGA 4 cut(s) 22, 397, 492, 548
TaqII GACCGA 1 cut(s) 670
TasI AATT 2 cut(s) 138, 144
TauI GCSGC 7 cut(s) 129, 156, 301, 465, 481, 705, 752
TfiI GAWTC 5 cut(s) 19, 40, 116, 272, 369
Tru1I TTAA 2 cut(s) 99, 798
Tru9I TTAA 2 cut(s) 99, 798
TseI GCWGC 3 cut(s) 57, 162, 487
TspGWI ACGGA 3 cut(s) 370, 433, 588
TspMI CCCGGG 1 cut(s) 411
Tth111I GACNNNGTC 1 cut(s) 326
Van91I CCANNNNNTGG 1 cut(s) 752
VpaK11BI GGWCC 3 cut(s) 529, 682, 755
XceI RCATGY 1 cut(s) 255
XhoI CTCGAG 2 cut(s) 491, 547
XmaI CCCGGG 1 cut(s) 411
XmaJI CCTAGG 1 cut(s) 211
XmiI GTMKAC 1 cut(s) 397
XspI CTAG 2 cut(s) 212, 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.