Rroxscaffold_131G00452110

protein Sb1211s002020 source

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000131
OG0000098
Physical Location & Seq
Forward (+)
4780 .. 5539
760 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_131G00452110.1

Sequence Viewer

Length: 543 bp
ATGGCACTCGGTCCTCCGGATTTTCAAGGGCCGCCGGGGCGCACCGACACCACGCGACGTGCGGTGCTCTTCCAGCCGCTGGACCCTACCTCCGCCGAGCCGTTTCCAGTGGTGGGCAGGCTGTTAAACGTAAAAGATAACTCTTCCCGAGGCCCCCGCCGACGTCTCCGACTCCCTAACGTTGCCGTCAACCACCACGTCCCGGTTCAGAATTTTAACCCGATTCCCTTTTCGGTTCGCGCGAGACGCGCTATCGACGGGTTACCCAGCCTCTTAGGATCGACTAACCCATGTGCAAGTGCCATCTGCACCGACGGCCGCTCCGCCGGCTCACGCCCTGTGTTTTGCAGCGACCGCCGCGCCCTCCTACTCATCGGGGCTCGGCACTTGCCCCGACGGCCGCGCGTAGTCGGGCACCGTAACCCGGCTTCCGGTTCATCCCGCATCGCCGCCTCGCTTACCAAAAATGGCCCACTTGGAGCTCTCGATTCCTTGGCGTGGCTCAACAAAGCAGCCACGCCGTCCTACCTATTTAAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

19.35

Weight (kDa)

11.76

Isoelectric Point (pI)

54.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000098)

Species Orthologous Gene IDs
pyrus_communis pycom05g23460 pycom581g00100 pycom849g00040
rosa_multiflora Rmu_sc0019961.1_g000001
rosa_roxburghii Rroxscaffold_100G00451180 Rroxscaffold_102G00450890 Rroxscaffold_102G00450920 Rroxscaffold_103G00450530 Rroxscaffold_103G00450560 Rroxscaffold_104G00444830 Rroxscaffold_104G00444900 Rroxscaffold_105G00447100 Rroxscaffold_105G00447180 Rroxscaffold_107G00442470 Rroxscaffold_107G00442480 Rroxscaffold_107G00442520 Rroxscaffold_107G00442540 Rroxscaffold_107G00442560 Rroxscaffold_107G00442570 Rroxscaffold_107G00442600 Rroxscaffold_107G00442630 Rroxscaffold_107G00442650 Rroxscaffold_107G00442660 Rroxscaffold_108G00451480 Rroxscaffold_110G00451510 Rroxscaffold_111G00451550 Rroxscaffold_112G00451590 Rroxscaffold_113G00451630 Rroxscaffold_114G00451650 Rroxscaffold_116G00451710 Rroxscaffold_117G00451740 Rroxscaffold_117G00451750 Rroxscaffold_121G00451840 Rroxscaffold_122G00451860 Rroxscaffold_122G00451880 Rroxscaffold_123G00451920 Rroxscaffold_124G00451950 Rroxscaffold_128G00452040 Rroxscaffold_128G00452060 Rroxscaffold_12G00450600 Rroxscaffold_12G00450620 Rroxscaffold_131G00452110 Rroxscaffold_138G00452180 Rroxscaffold_13G00448630 Rroxscaffold_145G00452240 Rroxscaffold_14G00441930 Rroxscaffold_14G00441950 Rroxscaffold_14G00442050 Rroxscaffold_14G00442080 Rroxscaffold_15G00447500 Rroxscaffold_162G00450770 Rroxscaffold_16G00446200 Rroxscaffold_16G00446210 Rroxscaffold_16G00446240 Rroxscaffold_17G00435360 Rroxscaffold_17G00435410 Rroxscaffold_17G00435450 Rroxscaffold_17G00435480 Rroxscaffold_17G00435500 Rroxscaffold_17G00435600 Rroxscaffold_17G00435660 Rroxscaffold_17G00435680 Rroxscaffold_17G00435760 Rroxscaffold_17G00435780 Rroxscaffold_17G00435810 Rroxscaffold_17G00435840 Rroxscaffold_17G00435870 Rroxscaffold_18G00446030 Rroxscaffold_18G00446060 Rroxscaffold_18G00446130 Rroxscaffold_19G00448890 Rroxscaffold_19G00448920 Rroxscaffold_19G00448940 Rroxscaffold_19G00448970 Rroxscaffold_1G00000020 Rroxscaffold_1G00000050 Rroxscaffold_1G00000160 Rroxscaffold_20G00445060 Rroxscaffold_20G00445100 Rroxscaffold_20G00445130 Rroxscaffold_21G00439490 Rroxscaffold_21G00439560 Rroxscaffold_21G00439580 Rroxscaffold_21G00439620 Rroxscaffold_21G00439630 Rroxscaffold_22G00439910 Rroxscaffold_22G00439950 Rroxscaffold_23G00451020 Rroxscaffold_23G00451040 Rroxscaffold_23G00451070 Rroxscaffold_24G00444920 Rroxscaffold_24G00444950 Rroxscaffold_24G00445000 Rroxscaffold_25G00450200 Rroxscaffold_26G00447730 Rroxscaffold_27G00446570 Rroxscaffold_27G00446600 Rroxscaffold_28G00446830 Rroxscaffold_28G00446860 Rroxscaffold_28G00446910 Rroxscaffold_29G00441560 Rroxscaffold_29G00441570 Rroxscaffold_29G00441590 Rroxscaffold_29G00441630 Rroxscaffold_29G00441640 Rroxscaffold_29G00441670 Rroxscaffold_29G00441680 Rroxscaffold_29G00441860 Rroxscaffold_30G00449540 Rroxscaffold_30G00449570 Rroxscaffold_30G00449580 Rroxscaffold_31G00438120 Rroxscaffold_31G00438140 Rroxscaffold_31G00438180 Rroxscaffold_31G00438190 Rroxscaffold_31G00438220 Rroxscaffold_31G00438230 Rroxscaffold_32G00442740 Rroxscaffold_32G00442760 Rroxscaffold_33G00439670 Rroxscaffold_33G00439720 Rroxscaffold_33G00439740 Rroxscaffold_33G00439760 Rroxscaffold_33G00439820 Rroxscaffold_34G00443140 Rroxscaffold_34G00443200 Rroxscaffold_34G00443250 Rroxscaffold_34G00443370 Rroxscaffold_34G00443390 Rroxscaffold_35G00441050 Rroxscaffold_35G00441080 Rroxscaffold_35G00441090 Rroxscaffold_35G00441170 Rroxscaffold_35G00441190 Rroxscaffold_35G00441230 Rroxscaffold_36G00440100 Rroxscaffold_36G00440170 Rroxscaffold_37G00445170 Rroxscaffold_38G00444440 Rroxscaffold_38G00444500 Rroxscaffold_38G00444550 Rroxscaffold_39G00448200 Rroxscaffold_39G00448210 Rroxscaffold_40G00447650 Rroxscaffold_40G00447680 Rroxscaffold_40G00447700 Rroxscaffold_40G00447710 Rroxscaffold_41G00451110 Rroxscaffold_41G00451130 Rroxscaffold_42G00450430 Rroxscaffold_43G00449800 Rroxscaffold_43G00449860 Rroxscaffold_43G00449920 Rroxscaffold_43G00449930 Rroxscaffold_44G00440540 Rroxscaffold_44G00440580 Rroxscaffold_44G00440660 Rroxscaffold_45G00438900 Rroxscaffold_45G00438930 Rroxscaffold_45G00438950 Rroxscaffold_47G00444020 Rroxscaffold_47G00444060 Rroxscaffold_47G00444120 Rroxscaffold_48G00448450 Rroxscaffold_49G00438570 Rroxscaffold_49G00438650 Rroxscaffold_49G00438700 Rroxscaffold_4G00321080 Rroxscaffold_50G00444130 Rroxscaffold_50G00444200 Rroxscaffold_50G00444210 Rroxscaffold_50G00444330 Rroxscaffold_50G00444350 Rroxscaffold_51G00447840 Rroxscaffold_52G00439310 Rroxscaffold_52G00439390 Rroxscaffold_54G00443660 Rroxscaffold_55G00450020 Rroxscaffold_55G00450050 Rroxscaffold_55G00450060 Rroxscaffold_55G00450080 Rroxscaffold_55G00450090 Rroxscaffold_55G00450120 Rroxscaffold_57G00443070 Rroxscaffold_59G00442210 Rroxscaffold_59G00442220 Rroxscaffold_60G00448360 Rroxscaffold_60G00448370 Rroxscaffold_60G00448410 Rroxscaffold_61G00449990 Rroxscaffold_62G00438040 Rroxscaffold_62G00438060 Rroxscaffold_62G00438080 Rroxscaffold_63G00444410 Rroxscaffold_63G00444430 Rroxscaffold_64G00450670 Rroxscaffold_65G00445300 Rroxscaffold_65G00445340 Rroxscaffold_65G00445360 Rroxscaffold_65G00445380 Rroxscaffold_65G00445420 Rroxscaffold_66G00437660 Rroxscaffold_66G00437820 Rroxscaffold_66G00437840 Rroxscaffold_66G00437890 Rroxscaffold_67G00448140 Rroxscaffold_67G00448150 Rroxscaffold_68G00447010 Rroxscaffold_69G00446670 Rroxscaffold_69G00446710 Rroxscaffold_69G00446770 Rroxscaffold_6G00387820 Rroxscaffold_70G00446300 Rroxscaffold_70G00446340 Rroxscaffold_70G00446380 Rroxscaffold_71G00445590 Rroxscaffold_71G00445600 Rroxscaffold_71G00445630 Rroxscaffold_71G00445690 Rroxscaffold_71G00445720 Rroxscaffold_71G00445740 Rroxscaffold_71G00445770 Rroxscaffold_72G00449370 Rroxscaffold_72G00449410 Rroxscaffold_72G00449450 Rroxscaffold_73G00439000 Rroxscaffold_73G00439060 Rroxscaffold_73G00439160 Rroxscaffold_73G00439270 Rroxscaffold_74G00442920 Rroxscaffold_75G00447260 Rroxscaffold_75G00447290 Rroxscaffold_75G00447430 Rroxscaffold_76G00448540 Rroxscaffold_76G00448610 Rroxscaffold_77G00449150 Rroxscaffold_78G00449610 Rroxscaffold_79G00450210 Rroxscaffold_80G00450330 Rroxscaffold_80G00450350 Rroxscaffold_81G00450480 Rroxscaffold_83G00450980 Rroxscaffold_85G00451230 Rroxscaffold_86G00451270 Rroxscaffold_89G00451410 Rroxscaffold_90G00448760 Rroxscaffold_90G00448770 Rroxscaffold_90G00448820 Rroxscaffold_91G00443000 Rroxscaffold_91G00443060 Rroxscaffold_92G00446430 Rroxscaffold_93G00440830 Rroxscaffold_93G00440850 Rroxscaffold_93G00440860 Rroxscaffold_93G00440880 Rroxscaffold_93G00440910 Rroxscaffold_94G00445830 Rroxscaffold_94G00445910 Rroxscaffold_94G00445940 Rroxscaffold_94G00446020 Rroxscaffold_97G00442340 Rroxscaffold_97G00442390 Rroxscaffold_97G00442400 Rroxscaffold_98G00451350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 166
AccB1I GGYRCC 1 cut(s) 414
AccB7I CCANNNNNTGG 1 cut(s) 79
AccBSI CCGCTC 1 cut(s) 321
AccII CGCG 7 cut(s) 55, 240, 242, 249, 360, 403, 405
AccIII TCCGGA 1 cut(s) 16
AclI AACGTT 1 cut(s) 180
AclWI GGATC 1 cut(s) 286
AcoI YGGCCR 2 cut(s) 316, 398
AcsI RAATTY 1 cut(s) 211
AcyI GRCGYC 1 cut(s) 163
AfiI CCNNNNNNNGG 6 cut(s) 79, 113, 202, 424, 431, 498
AgsI TTSAA 1 cut(s) 26
AjiI CACGTC 2 cut(s) 59, 199
AluBI AGCT 1 cut(s) 482
AluI AGCT 1 cut(s) 482
Alw21I GWGCWC 2 cut(s) 69, 484
Alw26I GTCTC 2 cut(s) 170, 238
AlwI GGATC 1 cut(s) 286
AlwNI CAGNNNCTG 1 cut(s) 79
Ama87I CYCGRG 1 cut(s) 147
Aor13HI TCCGGA 1 cut(s) 16
AoxI GGCC 5 cut(s) 29, 151, 316, 398, 469
ApeKI GCWGC 2 cut(s) 348, 512
ApoI RAATTY 1 cut(s) 211
AspLEI GCGC 5 cut(s) 42, 242, 251, 362, 405
AspS9I GGNCC 5 cut(s) 11, 29, 82, 152, 470
AsuC2I CCSGG 3 cut(s) 36, 203, 425
AvaI CYCGRG 1 cut(s) 147
AvaII GGWCC 2 cut(s) 11, 82
BaeGI GKGCMC 1 cut(s) 417
BanI GGYRCC 1 cut(s) 414
BanII GRGCYC 2 cut(s) 382, 484
BarI GAAGNNNNNNTAC 2 cut(s) 412, 444
Bbv12I GWGCWC 2 cut(s) 69, 484
BbvI GCAGC 2 cut(s) 360, 524
BccI CCATC 1 cut(s) 311
BceAI ACGGC 5 cut(s) 85, 170, 331, 413, 505
BcnI CCSGG 3 cut(s) 36, 203, 425
BcoDI GTCTC 2 cut(s) 170, 238
BglI GCCNNNNNGGC 2 cut(s) 37, 397
BisI GCNGC 8 cut(s) 32, 77, 319, 349, 358, 401, 450, 513
BlsI GCNGC 8 cut(s) 33, 78, 320, 350, 359, 402, 451, 514
Bme1390I CCNGG 3 cut(s) 36, 203, 425
Bme18I GGWCC 2 cut(s) 11, 82
BmeT110I CYCGRG 1 cut(s) 147
BmgBI CACGTC 2 cut(s) 59, 199
BmgT120I GGNCC 5 cut(s) 11, 29, 82, 152, 470
BmiI GGNNCC 3 cut(s) 84, 154, 416
BmrFI CCNGG 3 cut(s) 36, 203, 425
BmsI GCATC 1 cut(s) 453
BpuMI CCSGG 3 cut(s) 36, 203, 425
BsaHI GRCGYC 1 cut(s) 163
BsaJI CCNNGG 3 cut(s) 35, 148, 492
BsaWI WCCGGW 2 cut(s) 16, 431
BsaXI ACNNNNNCTCC 4 cut(s) 74, 104, 305, 335
Bsc4I CCNNNNNNNGG 6 cut(s) 79, 113, 202, 424, 431, 498
Bse118I RCCGGY 1 cut(s) 326
Bse1I ACTGG 1 cut(s) 107
BseAI TCCGGA 1 cut(s) 16
BseDI CCNNGG 3 cut(s) 35, 148, 492
BseGI GGATG 1 cut(s) 437
BseLI CCNNNNNNNGG 6 cut(s) 79, 113, 202, 424, 431, 498
BseNI ACTGG 1 cut(s) 107
BseSI GKGCMC 1 cut(s) 417
BseX3I CGGCCG 2 cut(s) 316, 398
BseXI GCAGC 2 cut(s) 360, 524
BseYI CCCAGC 1 cut(s) 266
BsgI GTGCAG 1 cut(s) 292
Bsh1236I CGCG 7 cut(s) 55, 240, 242, 249, 360, 403, 405
Bsh1285I CGRYCG 3 cut(s) 319, 355, 401
BshFI GGCC 5 cut(s) 31, 153, 318, 400, 471
BshNI GGYRCC 1 cut(s) 414
BsiEI CGRYCG 3 cut(s) 319, 355, 401
BsiHKAI GWGCWC 2 cut(s) 69, 484
BsiHKCI CYCGRG 1 cut(s) 147
BsiSI CCGG 6 cut(s) 17, 35, 203, 327, 425, 432
BslFI GGGAC 1 cut(s) 185
BslI CCNNNNNNNGG 6 cut(s) 79, 113, 202, 424, 431, 498
BsmAI GTCTC 2 cut(s) 170, 238
BsmBI CGTCTC 2 cut(s) 170, 238
BsmFI GGGAC 1 cut(s) 185
BsnI GGCC 5 cut(s) 31, 153, 318, 400, 471
BsoBI CYCGRG 1 cut(s) 147
Bsp1286I GDGCHC 4 cut(s) 69, 382, 417, 484
Bsp13I TCCGGA 1 cut(s) 16
Bsp143I GATC 1 cut(s) 278
BspANI GGCC 5 cut(s) 31, 153, 318, 400, 471
BspEI TCCGGA 1 cut(s) 16
BspFNI CGCG 7 cut(s) 55, 240, 242, 249, 360, 403, 405
BspLI GGNNCC 3 cut(s) 84, 154, 416
BspPI GGATC 1 cut(s) 286
BspQI GCTCTTC 1 cut(s) 74
BspT107I GGYRCC 1 cut(s) 414
BsrBI CCGCTC 1 cut(s) 321
BsrFI RCCGGY 1 cut(s) 326
BsrI ACTGG 1 cut(s) 107
BssAI RCCGGY 1 cut(s) 326
BssECI CCNNGG 3 cut(s) 35, 148, 492
BssMI GATC 1 cut(s) 278
BssNI GRCGYC 1 cut(s) 163
BssT1I CCWWGG 1 cut(s) 492
Bst4CI ACNGT 1 cut(s) 419
Bst6I CTCTTC 2 cut(s) 74, 148
BstACI GRCGYC 1 cut(s) 163
BstC8I GCNNGC 2 cut(s) 119, 328
BstDEI CTNAG 1 cut(s) 274
BstEII GGTNACC 1 cut(s) 261
BstF5I GGATG 1 cut(s) 437
BstFNI CGCG 7 cut(s) 55, 240, 242, 249, 360, 403, 405
BstHHI GCGC 5 cut(s) 42, 242, 251, 362, 405
BstKTI GATC 1 cut(s) 281
BstMAI GTCTC 2 cut(s) 170, 238
BstMBI GATC 1 cut(s) 278
BstMCI CGRYCG 3 cut(s) 319, 355, 401
BstMWI GCNNNNNNNGC 9 cut(s) 37, 73, 246, 248, 315, 327, 354, 357, 397
BstPI GGTNACC 1 cut(s) 261
BstSCI CCNGG 3 cut(s) 34, 201, 423
BstSLI GKGCMC 1 cut(s) 417
BstUI CGCG 7 cut(s) 55, 240, 242, 249, 360, 403, 405
BstV1I GCAGC 2 cut(s) 360, 524
BstZI CGGCCG 2 cut(s) 316, 398
BsuRI GGCC 5 cut(s) 31, 153, 318, 400, 471
BtgZI GCGATG 1 cut(s) 430
BtrI CACGTC 2 cut(s) 59, 199
BtsCI GGATG 1 cut(s) 437
BtsIMutI CAGTG 1 cut(s) 114
Cac8I GCNNGC 2 cut(s) 119, 328
CaiI CAGNNNCTG 1 cut(s) 79
CfoI GCGC 5 cut(s) 42, 242, 251, 362, 405
Cfr10I RCCGGY 1 cut(s) 326
Cfr13I GGNCC 5 cut(s) 11, 29, 82, 152, 470
CseI GACGC 1 cut(s) 255
CviAII CATG 1 cut(s) 291
DdeI CTNAG 1 cut(s) 274
DpnI GATC 1 cut(s) 280
DpnII GATC 1 cut(s) 278
DraI TTTAAA 1 cut(s) 535
EaeI YGGCCR 2 cut(s) 316, 398
EagI CGGCCG 2 cut(s) 316, 398
Eam1104I CTCTTC 2 cut(s) 74, 148
EarI CTCTTC 2 cut(s) 74, 148
EciI GGCGGA 2 cut(s) 82, 313
Ecl136II GAGCTC 1 cut(s) 482
EclXI CGGCCG 2 cut(s) 316, 398
Eco130I CCWWGG 1 cut(s) 492
Eco24I GRGCYC 2 cut(s) 382, 484
Eco47I GGWCC 2 cut(s) 11, 82
Eco52I CGGCCG 2 cut(s) 316, 398
Eco53kI GAGCTC 1 cut(s) 482
Eco88I CYCGRG 1 cut(s) 147
Eco91I GGTNACC 1 cut(s) 261
EcoICRI GAGCTC 1 cut(s) 482
EcoO109I RGGNCCY 1 cut(s) 152
EcoO65I GGTNACC 1 cut(s) 261
EcoT14I CCWWGG 1 cut(s) 492
EcoT38I GRGCYC 2 cut(s) 382, 484
ErhI CCWWGG 1 cut(s) 492
Esp3I CGTCTC 2 cut(s) 170, 238
FaeI CATG 1 cut(s) 294
FaiI YATR 1 cut(s) 292
FaqI GGGAC 1 cut(s) 185
FatI CATG 1 cut(s) 290
FauI CCCGC 2 cut(s) 164, 449
Fnu4HI GCNGC 8 cut(s) 32, 77, 319, 349, 358, 401, 450, 513
FokI GGATG 1 cut(s) 424
FriOI GRGCYC 2 cut(s) 382, 484
Fsp4HI GCNGC 8 cut(s) 32, 77, 319, 349, 358, 401, 450, 513
GlaI GCGC 5 cut(s) 41, 241, 250, 361, 404
GluI GCNGC 8 cut(s) 32, 77, 319, 349, 358, 401, 450, 513
GsaI CCCAGC 1 cut(s) 270
HaeIII GGCC 5 cut(s) 31, 153, 318, 400, 471
HapII CCGG 6 cut(s) 17, 35, 203, 327, 425, 432
HgaI GACGC 1 cut(s) 255
HhaI GCGC 5 cut(s) 42, 242, 251, 362, 405
Hin1I GRCGYC 1 cut(s) 163
Hin1II CATG 1 cut(s) 294
Hin6I GCGC 5 cut(s) 40, 240, 249, 360, 403
HinP1I GCGC 5 cut(s) 40, 240, 249, 360, 403
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HinfI GANTC 3 cut(s) 171, 223, 488
HpaII CCGG 6 cut(s) 17, 35, 203, 327, 425, 432
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 2 cut(s) 170, 210
Hpy188III TCNNGA 3 cut(s) 17, 147, 485
Hpy8I GTNNAC 1 cut(s) 190
Hpy99I CGWCG 5 cut(s) 60, 165, 260, 317, 399
HpyCH4III ACNGT 1 cut(s) 419
HpyCH4IV ACGT 5 cut(s) 58, 129, 163, 180, 198
HpyCH4V TGCA 3 cut(s) 296, 309, 348
HpyF10VI GCNNNNNNNGC 9 cut(s) 37, 73, 246, 248, 315, 327, 354, 357, 397
HpyF3I CTNAG 1 cut(s) 274
HpySE526I ACGT 5 cut(s) 58, 129, 163, 180, 198
Hsp92I GRCGYC 1 cut(s) 163
Hsp92II CATG 1 cut(s) 294
HspAI GCGC 5 cut(s) 40, 240, 249, 360, 403
Kpn2I TCCGGA 1 cut(s) 16
KroI GCCGGC 1 cut(s) 326
KroNI GCCGGC 1 cut(s) 328
Kzo9I GATC 1 cut(s) 278
LguI GCTCTTC 1 cut(s) 74
LmnI GCTCC 2 cut(s) 326, 479
Lsp1109I GCAGC 2 cut(s) 360, 524
LweI GCATC 1 cut(s) 453
MaeII ACGT 5 cut(s) 58, 129, 163, 180, 198
MaeIII GTNAC 2 cut(s) 261, 419
MalI GATC 1 cut(s) 280
MbiI CCGCTC 1 cut(s) 321
MboI GATC 1 cut(s) 278
MboII GAAGA 2 cut(s) 61, 135
MhlI GDGCHC 4 cut(s) 69, 382, 417, 484
MluCI AATT 1 cut(s) 211
MlyI GAGTC 1 cut(s) 165
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 6 cut(s) 24, 100, 143, 281, 374, 463
MroI TCCGGA 1 cut(s) 16
MroNI GCCGGC 1 cut(s) 326
MseI TTAA 3 cut(s) 125, 216, 534
MspA1I CMGCKG 1 cut(s) 79
MspI CCGG 6 cut(s) 17, 35, 203, 327, 425, 432
MspR9I CCNGG 3 cut(s) 36, 203, 425
MvnI CGCG 7 cut(s) 55, 240, 242, 249, 360, 403, 405
MwoI GCNNNNNNNGC 9 cut(s) 37, 73, 246, 248, 315, 327, 354, 357, 397
NaeI GCCGGC 1 cut(s) 328
NciI CCSGG 3 cut(s) 36, 203, 425
NdeII GATC 1 cut(s) 278
NgoMIV GCCGGC 1 cut(s) 326
NlaIII CATG 1 cut(s) 294
NlaIV GGNNCC 3 cut(s) 84, 154, 416
NmeAIII GCCGAG 2 cut(s) 121, 361
PciSI GCTCTTC 1 cut(s) 74
PcsI WCGNNNNNNNCGW 1 cut(s) 239
PdiI GCCGGC 1 cut(s) 328
PfeI GAWTC 2 cut(s) 223, 488
PflMI CCANNNNNTGG 1 cut(s) 79
PkrI GCNGC 8 cut(s) 33, 78, 320, 350, 359, 402, 451, 514
PleI GAGTC 1 cut(s) 165
PpsI GAGTC 1 cut(s) 165
Psp124BI GAGCTC 1 cut(s) 484
Psp1406I AACGTT 1 cut(s) 180
PspEI GGTNACC 1 cut(s) 261
PspFI CCCAGC 1 cut(s) 266
PspN4I GGNNCC 3 cut(s) 84, 154, 416
PspPI GGNCC 5 cut(s) 11, 29, 82, 152, 470
PstNI CAGNNNCTG 1 cut(s) 79
SacI GAGCTC 1 cut(s) 484
SapI GCTCTTC 1 cut(s) 74
SaqAI TTAA 3 cut(s) 125, 216, 534
SatI GCNGC 8 cut(s) 32, 77, 319, 349, 358, 401, 450, 513
Sau3AI GATC 1 cut(s) 278
Sau96I GGNCC 5 cut(s) 11, 29, 82, 152, 470
SchI GAGTC 1 cut(s) 165
ScrFI CCNGG 3 cut(s) 36, 203, 425
SduI GDGCHC 4 cut(s) 69, 382, 417, 484
SetI ASST 8 cut(s) 61, 92, 132, 166, 183, 201, 484, 531
SfaNI GCATC 1 cut(s) 453
SinI GGWCC 2 cut(s) 11, 82
Sse9I AATT 1 cut(s) 211
SstI GAGCTC 1 cut(s) 484
StyD4I CCNGG 3 cut(s) 34, 201, 423
StyI CCWWGG 1 cut(s) 492
TaaI ACNGT 1 cut(s) 419
TaiI ACGT 5 cut(s) 61, 132, 166, 183, 201
TaqI TCGA 3 cut(s) 255, 281, 486
TasI AATT 1 cut(s) 211
TauI GCSGC 6 cut(s) 34, 79, 321, 360, 403, 452
TfiI GAWTC 2 cut(s) 223, 488
Tru1I TTAA 3 cut(s) 125, 216, 534
Tru9I TTAA 3 cut(s) 125, 216, 534
TscAI CASTG 1 cut(s) 114
TseI GCWGC 2 cut(s) 348, 512
TspDTI ATGAA 1 cut(s) 426
TspRI CASTG 1 cut(s) 114
Van91I CCANNNNNTGG 1 cut(s) 79
VpaK11BI GGWCC 2 cut(s) 11, 82
XapI RAATTY 1 cut(s) 211
ZraI GACGTC 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.