Rroxscaffold_34G00443370

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000034
OG0000098
Physical Location & Seq
Reverse (-)
100307 .. 100596
290 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_34G00443370.1

Sequence Viewer

Length: 270 bp
ATGGCACTCGGTCCTCCGGATTTTCAAGGGCCGCCGGGGCGCACCGGACACCACGCGACGTGCGGTGCTCTTCCGCCGCCGGACCCTACCTCCGGCCGAGCCGTTTCCAGTGAAAAGATAACTCTTCCCGAGGCCCCCGCCGACGTCTCCGACTCCCTAACGTTGCCGTCAACCACCACGTCCCGGTTCAGAATTTTAACCCGATTCCCTTTTCGAAGTTCGCGCGAGACGCGCTATCGACGGGGTTACCCGCCTCTTAGGATCGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.69

Weight (kDa)

10.22

Isoelectric Point (pI)

60.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000098)

Species Orthologous Gene IDs
pyrus_communis pycom05g23460 pycom581g00100 pycom849g00040
rosa_multiflora Rmu_sc0019961.1_g000001
rosa_roxburghii Rroxscaffold_100G00451180 Rroxscaffold_102G00450890 Rroxscaffold_102G00450920 Rroxscaffold_103G00450530 Rroxscaffold_103G00450560 Rroxscaffold_104G00444830 Rroxscaffold_104G00444900 Rroxscaffold_105G00447100 Rroxscaffold_105G00447180 Rroxscaffold_107G00442470 Rroxscaffold_107G00442480 Rroxscaffold_107G00442520 Rroxscaffold_107G00442540 Rroxscaffold_107G00442560 Rroxscaffold_107G00442570 Rroxscaffold_107G00442600 Rroxscaffold_107G00442630 Rroxscaffold_107G00442650 Rroxscaffold_107G00442660 Rroxscaffold_108G00451480 Rroxscaffold_110G00451510 Rroxscaffold_111G00451550 Rroxscaffold_112G00451590 Rroxscaffold_113G00451630 Rroxscaffold_114G00451650 Rroxscaffold_116G00451710 Rroxscaffold_117G00451740 Rroxscaffold_117G00451750 Rroxscaffold_121G00451840 Rroxscaffold_122G00451860 Rroxscaffold_122G00451880 Rroxscaffold_123G00451920 Rroxscaffold_124G00451950 Rroxscaffold_128G00452040 Rroxscaffold_128G00452060 Rroxscaffold_12G00450600 Rroxscaffold_12G00450620 Rroxscaffold_131G00452110 Rroxscaffold_138G00452180 Rroxscaffold_13G00448630 Rroxscaffold_145G00452240 Rroxscaffold_14G00441930 Rroxscaffold_14G00441950 Rroxscaffold_14G00442050 Rroxscaffold_14G00442080 Rroxscaffold_15G00447500 Rroxscaffold_162G00450770 Rroxscaffold_16G00446200 Rroxscaffold_16G00446210 Rroxscaffold_16G00446240 Rroxscaffold_17G00435360 Rroxscaffold_17G00435410 Rroxscaffold_17G00435450 Rroxscaffold_17G00435480 Rroxscaffold_17G00435500 Rroxscaffold_17G00435600 Rroxscaffold_17G00435660 Rroxscaffold_17G00435680 Rroxscaffold_17G00435760 Rroxscaffold_17G00435780 Rroxscaffold_17G00435810 Rroxscaffold_17G00435840 Rroxscaffold_17G00435870 Rroxscaffold_18G00446030 Rroxscaffold_18G00446060 Rroxscaffold_18G00446130 Rroxscaffold_19G00448890 Rroxscaffold_19G00448920 Rroxscaffold_19G00448940 Rroxscaffold_19G00448970 Rroxscaffold_1G00000020 Rroxscaffold_1G00000050 Rroxscaffold_1G00000160 Rroxscaffold_20G00445060 Rroxscaffold_20G00445100 Rroxscaffold_20G00445130 Rroxscaffold_21G00439490 Rroxscaffold_21G00439560 Rroxscaffold_21G00439580 Rroxscaffold_21G00439620 Rroxscaffold_21G00439630 Rroxscaffold_22G00439910 Rroxscaffold_22G00439950 Rroxscaffold_23G00451020 Rroxscaffold_23G00451040 Rroxscaffold_23G00451070 Rroxscaffold_24G00444920 Rroxscaffold_24G00444950 Rroxscaffold_24G00445000 Rroxscaffold_25G00450200 Rroxscaffold_26G00447730 Rroxscaffold_27G00446570 Rroxscaffold_27G00446600 Rroxscaffold_28G00446830 Rroxscaffold_28G00446860 Rroxscaffold_28G00446910 Rroxscaffold_29G00441560 Rroxscaffold_29G00441570 Rroxscaffold_29G00441590 Rroxscaffold_29G00441630 Rroxscaffold_29G00441640 Rroxscaffold_29G00441670 Rroxscaffold_29G00441680 Rroxscaffold_29G00441860 Rroxscaffold_30G00449540 Rroxscaffold_30G00449570 Rroxscaffold_30G00449580 Rroxscaffold_31G00438120 Rroxscaffold_31G00438140 Rroxscaffold_31G00438180 Rroxscaffold_31G00438190 Rroxscaffold_31G00438220 Rroxscaffold_31G00438230 Rroxscaffold_32G00442740 Rroxscaffold_32G00442760 Rroxscaffold_33G00439670 Rroxscaffold_33G00439720 Rroxscaffold_33G00439740 Rroxscaffold_33G00439760 Rroxscaffold_33G00439820 Rroxscaffold_34G00443140 Rroxscaffold_34G00443200 Rroxscaffold_34G00443250 Rroxscaffold_34G00443370 Rroxscaffold_34G00443390 Rroxscaffold_35G00441050 Rroxscaffold_35G00441080 Rroxscaffold_35G00441090 Rroxscaffold_35G00441170 Rroxscaffold_35G00441190 Rroxscaffold_35G00441230 Rroxscaffold_36G00440100 Rroxscaffold_36G00440170 Rroxscaffold_37G00445170 Rroxscaffold_38G00444440 Rroxscaffold_38G00444500 Rroxscaffold_38G00444550 Rroxscaffold_39G00448200 Rroxscaffold_39G00448210 Rroxscaffold_40G00447650 Rroxscaffold_40G00447680 Rroxscaffold_40G00447700 Rroxscaffold_40G00447710 Rroxscaffold_41G00451110 Rroxscaffold_41G00451130 Rroxscaffold_42G00450430 Rroxscaffold_43G00449800 Rroxscaffold_43G00449860 Rroxscaffold_43G00449920 Rroxscaffold_43G00449930 Rroxscaffold_44G00440540 Rroxscaffold_44G00440580 Rroxscaffold_44G00440660 Rroxscaffold_45G00438900 Rroxscaffold_45G00438930 Rroxscaffold_45G00438950 Rroxscaffold_47G00444020 Rroxscaffold_47G00444060 Rroxscaffold_47G00444120 Rroxscaffold_48G00448450 Rroxscaffold_49G00438570 Rroxscaffold_49G00438650 Rroxscaffold_49G00438700 Rroxscaffold_4G00321080 Rroxscaffold_50G00444130 Rroxscaffold_50G00444200 Rroxscaffold_50G00444210 Rroxscaffold_50G00444330 Rroxscaffold_50G00444350 Rroxscaffold_51G00447840 Rroxscaffold_52G00439310 Rroxscaffold_52G00439390 Rroxscaffold_54G00443660 Rroxscaffold_55G00450020 Rroxscaffold_55G00450050 Rroxscaffold_55G00450060 Rroxscaffold_55G00450080 Rroxscaffold_55G00450090 Rroxscaffold_55G00450120 Rroxscaffold_57G00443070 Rroxscaffold_59G00442210 Rroxscaffold_59G00442220 Rroxscaffold_60G00448360 Rroxscaffold_60G00448370 Rroxscaffold_60G00448410 Rroxscaffold_61G00449990 Rroxscaffold_62G00438040 Rroxscaffold_62G00438060 Rroxscaffold_62G00438080 Rroxscaffold_63G00444410 Rroxscaffold_63G00444430 Rroxscaffold_64G00450670 Rroxscaffold_65G00445300 Rroxscaffold_65G00445340 Rroxscaffold_65G00445360 Rroxscaffold_65G00445380 Rroxscaffold_65G00445420 Rroxscaffold_66G00437660 Rroxscaffold_66G00437820 Rroxscaffold_66G00437840 Rroxscaffold_66G00437890 Rroxscaffold_67G00448140 Rroxscaffold_67G00448150 Rroxscaffold_68G00447010 Rroxscaffold_69G00446670 Rroxscaffold_69G00446710 Rroxscaffold_69G00446770 Rroxscaffold_6G00387820 Rroxscaffold_70G00446300 Rroxscaffold_70G00446340 Rroxscaffold_70G00446380 Rroxscaffold_71G00445590 Rroxscaffold_71G00445600 Rroxscaffold_71G00445630 Rroxscaffold_71G00445690 Rroxscaffold_71G00445720 Rroxscaffold_71G00445740 Rroxscaffold_71G00445770 Rroxscaffold_72G00449370 Rroxscaffold_72G00449410 Rroxscaffold_72G00449450 Rroxscaffold_73G00439000 Rroxscaffold_73G00439060 Rroxscaffold_73G00439160 Rroxscaffold_73G00439270 Rroxscaffold_74G00442920 Rroxscaffold_75G00447260 Rroxscaffold_75G00447290 Rroxscaffold_75G00447430 Rroxscaffold_76G00448540 Rroxscaffold_76G00448610 Rroxscaffold_77G00449150 Rroxscaffold_78G00449610 Rroxscaffold_79G00450210 Rroxscaffold_80G00450330 Rroxscaffold_80G00450350 Rroxscaffold_81G00450480 Rroxscaffold_83G00450980 Rroxscaffold_85G00451230 Rroxscaffold_86G00451270 Rroxscaffold_89G00451410 Rroxscaffold_90G00448760 Rroxscaffold_90G00448770 Rroxscaffold_90G00448820 Rroxscaffold_91G00443000 Rroxscaffold_91G00443060 Rroxscaffold_92G00446430 Rroxscaffold_93G00440830 Rroxscaffold_93G00440850 Rroxscaffold_93G00440860 Rroxscaffold_93G00440880 Rroxscaffold_93G00440910 Rroxscaffold_94G00445830 Rroxscaffold_94G00445910 Rroxscaffold_94G00445940 Rroxscaffold_94G00446020 Rroxscaffold_97G00442340 Rroxscaffold_97G00442390 Rroxscaffold_97G00442400 Rroxscaffold_98G00451350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 147
AccII CGCG 4 cut(s) 56, 223, 225, 232
AccIII TCCGGA 1 cut(s) 16
AciI CCGC 6 cut(s) 32, 63, 74, 77, 138, 251
AclI AACGTT 1 cut(s) 161
AclWI GGATC 1 cut(s) 269
AcoI YGGCCR 1 cut(s) 94
AcsI RAATTY 1 cut(s) 192
AcyI GRCGYC 1 cut(s) 144
AfiI CCNNNNNNNGG 2 cut(s) 92, 183
AgsI TTSAA 1 cut(s) 26
AjiI CACGTC 2 cut(s) 60, 180
Alw21I GWGCWC 1 cut(s) 70
Alw26I GTCTC 2 cut(s) 151, 221
AlwI GGATC 1 cut(s) 269
Ama87I CYCGRG 1 cut(s) 128
Aor13HI TCCGGA 1 cut(s) 16
AoxI GGCC 3 cut(s) 29, 94, 132
ApoI RAATTY 1 cut(s) 192
AspLEI GCGC 3 cut(s) 42, 225, 234
AspS9I GGNCC 4 cut(s) 11, 29, 82, 133
AsuC2I CCSGG 2 cut(s) 36, 184
AsuII TTCGAA 1 cut(s) 214
AvaI CYCGRG 1 cut(s) 128
AvaII GGWCC 2 cut(s) 11, 82
Bbv12I GWGCWC 1 cut(s) 70
BceAI ACGGC 2 cut(s) 86, 151
BcnI CCSGG 2 cut(s) 36, 184
BcoDI GTCTC 2 cut(s) 151, 221
BglI GCCNNNNNGGC 1 cut(s) 37
BisI GCNGC 2 cut(s) 32, 77
BlsI GCNGC 2 cut(s) 33, 78
Bme1390I CCNGG 2 cut(s) 36, 184
Bme18I GGWCC 2 cut(s) 11, 82
BmeT110I CYCGRG 1 cut(s) 128
BmgBI CACGTC 2 cut(s) 60, 180
BmgT120I GGNCC 4 cut(s) 11, 29, 82, 133
BmiI GGNNCC 2 cut(s) 84, 135
BmrFI CCNGG 2 cut(s) 36, 184
Bpu14I TTCGAA 1 cut(s) 214
BpuMI CCSGG 2 cut(s) 36, 184
BsaHI GRCGYC 1 cut(s) 144
BsaJI CCNNGG 2 cut(s) 35, 129
BsaWI WCCGGW 2 cut(s) 16, 44
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 2 cut(s) 92, 183
Bse1I ACTGG 1 cut(s) 108
BseAI TCCGGA 1 cut(s) 16
BseDI CCNNGG 2 cut(s) 35, 129
BseLI CCNNNNNNNGG 2 cut(s) 92, 183
BseNI ACTGG 1 cut(s) 108
BseX3I CGGCCG 1 cut(s) 94
Bsh1236I CGCG 4 cut(s) 56, 223, 225, 232
Bsh1285I CGRYCG 1 cut(s) 97
BshFI GGCC 3 cut(s) 31, 96, 134
BsiEI CGRYCG 1 cut(s) 97
BsiHKAI GWGCWC 1 cut(s) 70
BsiHKCI CYCGRG 1 cut(s) 128
BsiSI CCGG 6 cut(s) 17, 35, 45, 80, 93, 184
BslFI GGGAC 1 cut(s) 166
BslI CCNNNNNNNGG 2 cut(s) 92, 183
BsmAI GTCTC 2 cut(s) 151, 221
BsmBI CGTCTC 2 cut(s) 151, 221
BsmFI GGGAC 1 cut(s) 166
BsnI GGCC 3 cut(s) 31, 96, 134
BsoBI CYCGRG 1 cut(s) 128
Bsp119I TTCGAA 1 cut(s) 214
Bsp1286I GDGCHC 1 cut(s) 70
Bsp13I TCCGGA 1 cut(s) 16
Bsp143I GATC 1 cut(s) 261
BspACI CCGC 6 cut(s) 32, 63, 74, 77, 138, 251
BspANI GGCC 3 cut(s) 31, 96, 134
BspEI TCCGGA 1 cut(s) 16
BspFNI CGCG 4 cut(s) 56, 223, 225, 232
BspLI GGNNCC 2 cut(s) 84, 135
BspPI GGATC 1 cut(s) 269
BspQI GCTCTTC 1 cut(s) 75
BspT104I TTCGAA 1 cut(s) 214
BsrI ACTGG 1 cut(s) 108
BssECI CCNNGG 2 cut(s) 35, 129
BssMI GATC 1 cut(s) 261
BssNI GRCGYC 1 cut(s) 144
Bst6I CTCTTC 2 cut(s) 75, 129
BstACI GRCGYC 1 cut(s) 144
BstBI TTCGAA 1 cut(s) 214
BstDEI CTNAG 1 cut(s) 257
BstEII GGTNACC 1 cut(s) 245
BstFNI CGCG 4 cut(s) 56, 223, 225, 232
BstHHI GCGC 3 cut(s) 42, 225, 234
BstKTI GATC 1 cut(s) 264
BstMAI GTCTC 2 cut(s) 151, 221
BstMBI GATC 1 cut(s) 261
BstMCI CGRYCG 1 cut(s) 97
BstMWI GCNNNNNNNGC 3 cut(s) 37, 229, 231
BstPI GGTNACC 1 cut(s) 245
BstSCI CCNGG 2 cut(s) 34, 182
BstUI CGCG 4 cut(s) 56, 223, 225, 232
BstZI CGGCCG 1 cut(s) 94
BsuRI GGCC 3 cut(s) 31, 96, 134
BtrI CACGTC 2 cut(s) 60, 180
BtsIMutI CAGTG 1 cut(s) 115
CfoI GCGC 3 cut(s) 42, 225, 234
Cfr13I GGNCC 4 cut(s) 11, 29, 82, 133
CseI GACGC 1 cut(s) 238
CviJI RGCY 4 cut(s) 31, 96, 101, 134
CviKI_1 RGCY 4 cut(s) 31, 96, 101, 134
DdeI CTNAG 1 cut(s) 257
DpnI GATC 1 cut(s) 263
DpnII GATC 1 cut(s) 261
EaeI YGGCCR 1 cut(s) 94
EagI CGGCCG 1 cut(s) 94
Eam1104I CTCTTC 2 cut(s) 75, 129
EarI CTCTTC 2 cut(s) 75, 129
EciI GGCGGA 1 cut(s) 63
EclXI CGGCCG 1 cut(s) 94
Eco47I GGWCC 2 cut(s) 11, 82
Eco52I CGGCCG 1 cut(s) 94
Eco88I CYCGRG 1 cut(s) 128
Eco91I GGTNACC 1 cut(s) 245
EcoO109I RGGNCCY 1 cut(s) 133
EcoO65I GGTNACC 1 cut(s) 245
Esp3I CGTCTC 2 cut(s) 151, 221
FaqI GGGAC 1 cut(s) 166
FauI CCCGC 2 cut(s) 145, 258
Fnu4HI GCNGC 2 cut(s) 32, 77
Fsp4HI GCNGC 2 cut(s) 32, 77
GlaI GCGC 3 cut(s) 41, 224, 233
GluI GCNGC 2 cut(s) 32, 77
HaeIII GGCC 3 cut(s) 31, 96, 134
HapII CCGG 6 cut(s) 17, 35, 45, 80, 93, 184
HgaI GACGC 1 cut(s) 238
HhaI GCGC 3 cut(s) 42, 225, 234
Hin1I GRCGYC 1 cut(s) 144
Hin6I GCGC 3 cut(s) 40, 223, 232
HinP1I GCGC 3 cut(s) 40, 223, 232
HincII GTYRAC 1 cut(s) 171
HindII GTYRAC 1 cut(s) 171
HinfI GANTC 2 cut(s) 152, 204
HpaII CCGG 6 cut(s) 17, 35, 45, 80, 93, 184
Hpy166II GTNNAC 1 cut(s) 171
Hpy188I TCNGA 2 cut(s) 151, 191
Hpy188III TCNNGA 2 cut(s) 17, 128
Hpy8I GTNNAC 1 cut(s) 171
Hpy99I CGWCG 3 cut(s) 61, 146, 243
HpyCH4IV ACGT 4 cut(s) 59, 144, 161, 179
HpyF10VI GCNNNNNNNGC 3 cut(s) 37, 229, 231
HpyF3I CTNAG 1 cut(s) 257
HpySE526I ACGT 4 cut(s) 59, 144, 161, 179
Hsp92I GRCGYC 1 cut(s) 144
HspAI GCGC 3 cut(s) 40, 223, 232
Kpn2I TCCGGA 1 cut(s) 16
Kzo9I GATC 1 cut(s) 261
LguI GCTCTTC 1 cut(s) 75
LpnPI CCDG 7 cut(s) 30, 48, 58, 93, 106, 121, 197
MaeII ACGT 4 cut(s) 59, 144, 161, 179
MaeIII GTNAC 1 cut(s) 245
MalI GATC 1 cut(s) 263
MboI GATC 1 cut(s) 261
MboII GAAGA 2 cut(s) 62, 116
MhlI GDGCHC 1 cut(s) 70
MluCI AATT 1 cut(s) 192
MlyI GAGTC 1 cut(s) 146
MmeI TCCRAC 1 cut(s) 174
MnlI CCTC 4 cut(s) 24, 100, 124, 264
MroI TCCGGA 1 cut(s) 16
MseI TTAA 1 cut(s) 197
MspI CCGG 6 cut(s) 17, 35, 45, 80, 93, 184
MspR9I CCNGG 2 cut(s) 36, 184
MvnI CGCG 4 cut(s) 56, 223, 225, 232
MwoI GCNNNNNNNGC 3 cut(s) 37, 229, 231
NciI CCSGG 2 cut(s) 36, 184
NdeII GATC 1 cut(s) 261
NlaIV GGNNCC 2 cut(s) 84, 135
NmeAIII GCCGAG 1 cut(s) 122
NspV TTCGAA 1 cut(s) 214
PciSI GCTCTTC 1 cut(s) 75
PfeI GAWTC 1 cut(s) 204
PkrI GCNGC 2 cut(s) 33, 78
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
Psp1406I AACGTT 1 cut(s) 161
PspEI GGTNACC 1 cut(s) 245
PspN4I GGNNCC 2 cut(s) 84, 135
PspPI GGNCC 4 cut(s) 11, 29, 82, 133
SapI GCTCTTC 1 cut(s) 75
SaqAI TTAA 1 cut(s) 197
SatI GCNGC 2 cut(s) 32, 77
Sau3AI GATC 1 cut(s) 261
Sau96I GGNCC 4 cut(s) 11, 29, 82, 133
SchI GAGTC 1 cut(s) 146
ScrFI CCNGG 2 cut(s) 36, 184
SduI GDGCHC 1 cut(s) 70
SetI ASST 5 cut(s) 62, 92, 147, 164, 182
SfuI TTCGAA 1 cut(s) 214
SinI GGWCC 2 cut(s) 11, 82
Sse9I AATT 1 cut(s) 192
SsiI CCGC 6 cut(s) 32, 63, 74, 77, 138, 251
StyD4I CCNGG 2 cut(s) 34, 182
TaiI ACGT 4 cut(s) 62, 147, 164, 182
TaqI TCGA 3 cut(s) 214, 238, 264
TasI AATT 1 cut(s) 192
TauI GCSGC 2 cut(s) 34, 79
TfiI GAWTC 1 cut(s) 204
Tru1I TTAA 1 cut(s) 197
Tru9I TTAA 1 cut(s) 197
TscAI CASTG 1 cut(s) 115
TspRI CASTG 1 cut(s) 115
VpaK11BI GGWCC 2 cut(s) 11, 82
XapI RAATTY 1 cut(s) 192
ZraI GACGTC 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.