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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 40 |
| AccBSI | CCGCTC | 1 cut(s) | 218 |
| AccII | CGCG | 6 cut(s) | 55, 68, 70, 77, 258, 312 |
| AccIII | TCCGGA | 1 cut(s) | 16 |
| AciI | CCGC | 5 cut(s) | 32, 216, 221, 253, 256 |
| AclWI | GGATC | 1 cut(s) | 115 |
| AcoI | YGGCCR | 2 cut(s) | 213, 295 |
| AcyI | GRCGYC | 1 cut(s) | 41 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 297 |
| AgsI | TTSAA | 3 cut(s) | 26, 165, 179 |
| AjiI | CACGTC | 1 cut(s) | 59 |
| Alw26I | GTCTC | 2 cut(s) | 66, 104 |
| AlwI | GGATC | 1 cut(s) | 115 |
| Ama87I | CYCGRG | 1 cut(s) | 236 |
| Aor13HI | TCCGGA | 1 cut(s) | 16 |
| AoxI | GGCC | 5 cut(s) | 29, 158, 213, 276, 295 |
| ApeKI | GCWGC | 1 cut(s) | 246 |
| AspLEI | GCGC | 5 cut(s) | 43, 70, 79, 260, 314 |
| AspS9I | GGNCC | 3 cut(s) | 11, 29, 276 |
| AsuC2I | CCSGG | 5 cut(s) | 36, 96, 225, 237, 238 |
| AvaI | CYCGRG | 1 cut(s) | 236 |
| AvaII | GGWCC | 1 cut(s) | 11 |
| BanI | GGYRCC | 1 cut(s) | 40 |
| BanII | GRGCYC | 1 cut(s) | 230 |
| BbvI | GCAGC | 1 cut(s) | 258 |
| BceAI | ACGGC | 3 cut(s) | 116, 228, 310 |
| BcnI | CCSGG | 5 cut(s) | 36, 96, 225, 237, 238 |
| BcoDI | GTCTC | 2 cut(s) | 66, 104 |
| BfoI | RGCGCY | 1 cut(s) | 44 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 294 |
| BglII | AGATCT | 1 cut(s) | 200 |
| BisI | GCNGC | 4 cut(s) | 32, 216, 247, 256 |
| BlsI | GCNGC | 4 cut(s) | 33, 217, 248, 257 |
| Bme1390I | CCNGG | 5 cut(s) | 36, 96, 225, 237, 238 |
| Bme18I | GGWCC | 1 cut(s) | 11 |
| BmeT110I | CYCGRG | 1 cut(s) | 236 |
| BmgBI | CACGTC | 1 cut(s) | 59 |
| BmgT120I | GGNCC | 3 cut(s) | 11, 29, 276 |
| BmiI | GGNNCC | 3 cut(s) | 42, 144, 277 |
| BmrFI | CCNGG | 5 cut(s) | 36, 96, 225, 237, 238 |
| BpuMI | CCSGG | 5 cut(s) | 36, 96, 225, 237, 238 |
| BsaHI | GRCGYC | 1 cut(s) | 41 |
| BsaI | GGTCTC | 1 cut(s) | 104 |
| BsaJI | CCNNGG | 3 cut(s) | 35, 235, 236 |
| BsaWI | WCCGGW | 1 cut(s) | 16 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 202, 232 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 297 |
| Bse118I | RCCGGY | 2 cut(s) | 278, 297 |
| BseAI | TCCGGA | 1 cut(s) | 16 |
| BseDI | CCNNGG | 3 cut(s) | 35, 235, 236 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 297 |
| BseX3I | CGGCCG | 2 cut(s) | 213, 295 |
| BseXI | GCAGC | 1 cut(s) | 258 |
| BsgI | GTGCAG | 1 cut(s) | 189 |
| Bsh1236I | CGCG | 6 cut(s) | 55, 68, 70, 77, 258, 312 |
| Bsh1285I | CGRYCG | 3 cut(s) | 216, 253, 298 |
| BshFI | GGCC | 5 cut(s) | 31, 160, 215, 278, 297 |
| BshNI | GGYRCC | 1 cut(s) | 40 |
| BsiEI | CGRYCG | 3 cut(s) | 216, 253, 298 |
| BsiHKCI | CYCGRG | 1 cut(s) | 236 |
| BsiSI | CCGG | 8 cut(s) | 17, 35, 44, 96, 224, 237, 279, 298 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 297 |
| BsmAI | GTCTC | 2 cut(s) | 66, 104 |
| BsmBI | CGTCTC | 1 cut(s) | 66 |
| BsnI | GGCC | 5 cut(s) | 31, 160, 215, 278, 297 |
| Bso31I | GGTCTC | 1 cut(s) | 104 |
| BsoBI | CYCGRG | 1 cut(s) | 236 |
| Bsp1286I | GDGCHC | 1 cut(s) | 230 |
| Bsp13I | TCCGGA | 1 cut(s) | 16 |
| Bsp143I | GATC | 2 cut(s) | 107, 200 |
| BspACI | CCGC | 5 cut(s) | 32, 216, 221, 253, 256 |
| BspANI | GGCC | 5 cut(s) | 31, 160, 215, 278, 297 |
| BspEI | TCCGGA | 1 cut(s) | 16 |
| BspFNI | CGCG | 6 cut(s) | 55, 68, 70, 77, 258, 312 |
| BspLI | GGNNCC | 3 cut(s) | 42, 144, 277 |
| BspPI | GGATC | 1 cut(s) | 115 |
| BspT107I | GGYRCC | 1 cut(s) | 40 |
| BspTNI | GGTCTC | 1 cut(s) | 104 |
| BsrBI | CCGCTC | 1 cut(s) | 218 |
| BsrFI | RCCGGY | 2 cut(s) | 278, 297 |
| BssAI | RCCGGY | 2 cut(s) | 278, 297 |
| BssECI | CCNNGG | 3 cut(s) | 35, 235, 236 |
| BssMI | GATC | 2 cut(s) | 107, 200 |
| BssNI | GRCGYC | 1 cut(s) | 41 |
| Bst6I | CTCTTC | 1 cut(s) | 159 |
| BstACI | GRCGYC | 1 cut(s) | 41 |
| BstC8I | GCNNGC | 1 cut(s) | 280 |
| BstDEI | CTNAG | 1 cut(s) | 103 |
| BstEII | GGTNACC | 1 cut(s) | 90 |
| BstFNI | CGCG | 6 cut(s) | 55, 68, 70, 77, 258, 312 |
| BstH2I | RGCGCY | 1 cut(s) | 44 |
| BstHHI | GCGC | 5 cut(s) | 43, 70, 79, 260, 314 |
| BstKTI | GATC | 2 cut(s) | 110, 203 |
| BstMAI | GTCTC | 2 cut(s) | 66, 104 |
| BstMBI | GATC | 2 cut(s) | 107, 200 |
| BstMCI | CGRYCG | 3 cut(s) | 216, 253, 298 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 40, 74, 76, 212, 252, 255, 294 |
| BstPI | GGTNACC | 1 cut(s) | 90 |
| BstSCI | CCNGG | 5 cut(s) | 34, 94, 223, 235, 236 |
| BstUI | CGCG | 6 cut(s) | 55, 68, 70, 77, 258, 312 |
| BstV1I | GCAGC | 1 cut(s) | 258 |
| BstX2I | RGATCY | 1 cut(s) | 200 |
| BstYI | RGATCY | 1 cut(s) | 200 |
| BstZI | CGGCCG | 2 cut(s) | 213, 295 |
| BsuRI | GGCC | 5 cut(s) | 31, 160, 215, 278, 297 |
| BtrI | CACGTC | 1 cut(s) | 59 |
| Cac8I | GCNNGC | 1 cut(s) | 280 |
| CfoI | GCGC | 5 cut(s) | 43, 70, 79, 260, 314 |
| Cfr10I | RCCGGY | 2 cut(s) | 278, 297 |
| Cfr13I | GGNCC | 3 cut(s) | 11, 29, 276 |
| Cfr9I | CCCGGG | 1 cut(s) | 236 |
| CseI | GACGC | 1 cut(s) | 83 |
| CviAII | CATG | 2 cut(s) | 120, 139 |
| CviJI | RGCY | 6 cut(s) | 31, 160, 215, 228, 278, 297 |
| CviKI_1 | RGCY | 6 cut(s) | 31, 160, 215, 228, 278, 297 |
| DdeI | CTNAG | 1 cut(s) | 103 |
| DinI | GGCGCC | 1 cut(s) | 42 |
| DpnI | GATC | 2 cut(s) | 109, 202 |
| DpnII | GATC | 2 cut(s) | 107, 200 |
| EaeI | YGGCCR | 2 cut(s) | 213, 295 |
| EagI | CGGCCG | 2 cut(s) | 213, 295 |
| Eam1104I | CTCTTC | 1 cut(s) | 159 |
| EarI | CTCTTC | 1 cut(s) | 159 |
| EciI | GGCGGA | 1 cut(s) | 210 |
| EclXI | CGGCCG | 2 cut(s) | 213, 295 |
| Eco24I | GRGCYC | 1 cut(s) | 230 |
| Eco31I | GGTCTC | 1 cut(s) | 104 |
| Eco47I | GGWCC | 1 cut(s) | 11 |
| Eco52I | CGGCCG | 2 cut(s) | 213, 295 |
| Eco88I | CYCGRG | 1 cut(s) | 236 |
| Eco91I | GGTNACC | 1 cut(s) | 90 |
| EcoO65I | GGTNACC | 1 cut(s) | 90 |
| EcoT38I | GRGCYC | 1 cut(s) | 230 |
| EgeI | GGCGCC | 1 cut(s) | 42 |
| EheI | GGCGCC | 1 cut(s) | 42 |
| Esp3I | CGTCTC | 1 cut(s) | 66 |
| FaeI | CATG | 2 cut(s) | 123, 142 |
| FaiI | YATR | 3 cut(s) | 121, 140, 303 |
| FatI | CATG | 2 cut(s) | 119, 138 |
| Fnu4HI | GCNGC | 4 cut(s) | 32, 216, 247, 256 |
| FriOI | GRGCYC | 1 cut(s) | 230 |
| Fsp4HI | GCNGC | 4 cut(s) | 32, 216, 247, 256 |
| GlaI | GCGC | 5 cut(s) | 42, 69, 78, 259, 313 |
| GluI | GCNGC | 4 cut(s) | 32, 216, 247, 256 |
| HaeII | RGCGCY | 1 cut(s) | 44 |
| HaeIII | GGCC | 5 cut(s) | 31, 160, 215, 278, 297 |
| HapII | CCGG | 8 cut(s) | 17, 35, 44, 96, 224, 237, 279, 298 |
| HgaI | GACGC | 1 cut(s) | 83 |
| HhaI | GCGC | 5 cut(s) | 43, 70, 79, 260, 314 |
| Hin1I | GRCGYC | 1 cut(s) | 41 |
| Hin1II | CATG | 2 cut(s) | 123, 142 |
| Hin6I | GCGC | 5 cut(s) | 41, 68, 77, 258, 312 |
| HinP1I | GCGC | 5 cut(s) | 41, 68, 77, 258, 312 |
| HpaII | CCGG | 8 cut(s) | 17, 35, 44, 96, 224, 237, 279, 298 |
| Hpy166II | GTNNAC | 1 cut(s) | 136 |
| Hpy188III | TCNNGA | 1 cut(s) | 17 |
| Hpy8I | GTNNAC | 1 cut(s) | 136 |
| Hpy99I | CGWCG | 4 cut(s) | 60, 88, 214, 296 |
| HpyAV | CCTTC | 1 cut(s) | 171 |
| HpyCH4IV | ACGT | 1 cut(s) | 58 |
| HpyCH4V | TGCA | 3 cut(s) | 125, 206, 246 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 40, 74, 76, 212, 252, 255, 294 |
| HpyF3I | CTNAG | 1 cut(s) | 103 |
| HpySE526I | ACGT | 1 cut(s) | 58 |
| Hsp92I | GRCGYC | 1 cut(s) | 41 |
| Hsp92II | CATG | 2 cut(s) | 123, 142 |
| HspAI | GCGC | 5 cut(s) | 41, 68, 77, 258, 312 |
| KasI | GGCGCC | 1 cut(s) | 40 |
| Kpn2I | TCCGGA | 1 cut(s) | 16 |
| KroI | GCCGGC | 1 cut(s) | 278 |
| KroNI | GCCGGC | 1 cut(s) | 280 |
| Kzo9I | GATC | 2 cut(s) | 107, 200 |
| LmnI | GCTCC | 1 cut(s) | 223 |
| LpnPI | CCDG | 8 cut(s) | 30, 48, 57, 109, 237, 250, 292, 311 |
| Lsp1109I | GCAGC | 1 cut(s) | 258 |
| MaeII | ACGT | 1 cut(s) | 58 |
| MaeIII | GTNAC | 2 cut(s) | 90, 306 |
| MalI | GATC | 2 cut(s) | 109, 202 |
| MbiI | CCGCTC | 1 cut(s) | 218 |
| MboI | GATC | 2 cut(s) | 107, 200 |
| MboII | GAAGA | 1 cut(s) | 146 |
| MflI | RGATCY | 1 cut(s) | 200 |
| MhlI | GDGCHC | 1 cut(s) | 230 |
| Mly113I | GGCGCC | 1 cut(s) | 41 |
| MnlI | CCTC | 3 cut(s) | 24, 162, 272 |
| MroI | TCCGGA | 1 cut(s) | 16 |
| MroNI | GCCGGC | 1 cut(s) | 278 |
| MseI | TTAA | 1 cut(s) | 316 |
| MspI | CCGG | 8 cut(s) | 17, 35, 44, 96, 224, 237, 279, 298 |
| MspR9I | CCNGG | 5 cut(s) | 36, 96, 225, 237, 238 |
| MvnI | CGCG | 6 cut(s) | 55, 68, 70, 77, 258, 312 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 40, 74, 76, 212, 252, 255, 294 |
| NaeI | GCCGGC | 1 cut(s) | 280 |
| NarI | GGCGCC | 1 cut(s) | 41 |
| NciI | CCSGG | 5 cut(s) | 36, 96, 225, 237, 238 |
| NdeII | GATC | 2 cut(s) | 107, 200 |
| NgoMIV | GCCGGC | 1 cut(s) | 278 |
| NlaIII | CATG | 2 cut(s) | 123, 142 |
| NlaIV | GGNNCC | 3 cut(s) | 42, 144, 277 |
| NmuCI | GTSAC | 1 cut(s) | 306 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 59 |
| PdiI | GCCGGC | 1 cut(s) | 280 |
| PkrI | GCNGC | 4 cut(s) | 33, 217, 248, 257 |
| PluTI | GGCGCC | 1 cut(s) | 44 |
| PspEI | GGTNACC | 1 cut(s) | 90 |
| PspN4I | GGNNCC | 3 cut(s) | 42, 144, 277 |
| PspPI | GGNCC | 3 cut(s) | 11, 29, 276 |
| PsuI | RGATCY | 1 cut(s) | 200 |
| SaqAI | TTAA | 1 cut(s) | 316 |
| SatI | GCNGC | 4 cut(s) | 32, 216, 247, 256 |
| Sau3AI | GATC | 2 cut(s) | 107, 200 |
| Sau96I | GGNCC | 3 cut(s) | 11, 29, 276 |
| ScrFI | CCNGG | 5 cut(s) | 36, 96, 225, 237, 238 |
| SduI | GDGCHC | 1 cut(s) | 230 |
| SetI | ASST | 3 cut(s) | 61, 148, 308 |
| SfoI | GGCGCC | 1 cut(s) | 42 |
| SinI | GGWCC | 1 cut(s) | 11 |
| SmaI | CCCGGG | 1 cut(s) | 238 |
| SsiI | CCGC | 5 cut(s) | 32, 216, 221, 253, 256 |
| SspDI | GGCGCC | 1 cut(s) | 40 |
| SspI | AATATT | 1 cut(s) | 182 |
| StyD4I | CCNGG | 5 cut(s) | 34, 94, 223, 235, 236 |
| TaiI | ACGT | 1 cut(s) | 61 |
| TaqI | TCGA | 2 cut(s) | 83, 110 |
| TauI | GCSGC | 3 cut(s) | 34, 218, 258 |
| Tru1I | TTAA | 1 cut(s) | 316 |
| Tru9I | TTAA | 1 cut(s) | 316 |
| TseFI | GTSAC | 1 cut(s) | 306 |
| TseI | GCWGC | 1 cut(s) | 246 |
| Tsp45I | GTSAC | 1 cut(s) | 306 |
| TspMI | CCCGGG | 1 cut(s) | 236 |
| VpaK11BI | GGWCC | 1 cut(s) | 11 |
| XmaI | CCCGGG | 1 cut(s) | 236 |