Rroxscaffold_17G00435410

DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000017
OG0000098
Physical Location & Seq
Forward (+)
57993 .. 58523
531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_17G00435410.1

Sequence Viewer

Length: 531 bp
ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTTAAATTCCAAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTCGTACTGGAAATCAGAATCAAACGAGCTTTTACCCTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATCTTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATCAGCCCGCCGAAGCAGGCTTTGGGTCCAAAAAGAGGGGCAGTGCCCCGCCTCCGATTCACGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTCGCCCGAAGGCTCCCACTTATACTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

19.3

Weight (kDa)

9.88

Isoelectric Point (pI)

47.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000098)

Species Orthologous Gene IDs
pyrus_communis pycom05g23460 pycom581g00100 pycom849g00040
rosa_multiflora Rmu_sc0019961.1_g000001
rosa_roxburghii Rroxscaffold_100G00451180 Rroxscaffold_102G00450890 Rroxscaffold_102G00450920 Rroxscaffold_103G00450530 Rroxscaffold_103G00450560 Rroxscaffold_104G00444830 Rroxscaffold_104G00444900 Rroxscaffold_105G00447100 Rroxscaffold_105G00447180 Rroxscaffold_107G00442470 Rroxscaffold_107G00442480 Rroxscaffold_107G00442520 Rroxscaffold_107G00442540 Rroxscaffold_107G00442560 Rroxscaffold_107G00442570 Rroxscaffold_107G00442600 Rroxscaffold_107G00442630 Rroxscaffold_107G00442650 Rroxscaffold_107G00442660 Rroxscaffold_108G00451480 Rroxscaffold_110G00451510 Rroxscaffold_111G00451550 Rroxscaffold_112G00451590 Rroxscaffold_113G00451630 Rroxscaffold_114G00451650 Rroxscaffold_116G00451710 Rroxscaffold_117G00451740 Rroxscaffold_117G00451750 Rroxscaffold_121G00451840 Rroxscaffold_122G00451860 Rroxscaffold_122G00451880 Rroxscaffold_123G00451920 Rroxscaffold_124G00451950 Rroxscaffold_128G00452040 Rroxscaffold_128G00452060 Rroxscaffold_12G00450600 Rroxscaffold_12G00450620 Rroxscaffold_131G00452110 Rroxscaffold_138G00452180 Rroxscaffold_13G00448630 Rroxscaffold_145G00452240 Rroxscaffold_14G00441930 Rroxscaffold_14G00441950 Rroxscaffold_14G00442050 Rroxscaffold_14G00442080 Rroxscaffold_15G00447500 Rroxscaffold_162G00450770 Rroxscaffold_16G00446200 Rroxscaffold_16G00446210 Rroxscaffold_16G00446240 Rroxscaffold_17G00435360 Rroxscaffold_17G00435410 Rroxscaffold_17G00435450 Rroxscaffold_17G00435480 Rroxscaffold_17G00435500 Rroxscaffold_17G00435600 Rroxscaffold_17G00435660 Rroxscaffold_17G00435680 Rroxscaffold_17G00435760 Rroxscaffold_17G00435780 Rroxscaffold_17G00435810 Rroxscaffold_17G00435840 Rroxscaffold_17G00435870 Rroxscaffold_18G00446030 Rroxscaffold_18G00446060 Rroxscaffold_18G00446130 Rroxscaffold_19G00448890 Rroxscaffold_19G00448920 Rroxscaffold_19G00448940 Rroxscaffold_19G00448970 Rroxscaffold_1G00000020 Rroxscaffold_1G00000050 Rroxscaffold_1G00000160 Rroxscaffold_20G00445060 Rroxscaffold_20G00445100 Rroxscaffold_20G00445130 Rroxscaffold_21G00439490 Rroxscaffold_21G00439560 Rroxscaffold_21G00439580 Rroxscaffold_21G00439620 Rroxscaffold_21G00439630 Rroxscaffold_22G00439910 Rroxscaffold_22G00439950 Rroxscaffold_23G00451020 Rroxscaffold_23G00451040 Rroxscaffold_23G00451070 Rroxscaffold_24G00444920 Rroxscaffold_24G00444950 Rroxscaffold_24G00445000 Rroxscaffold_25G00450200 Rroxscaffold_26G00447730 Rroxscaffold_27G00446570 Rroxscaffold_27G00446600 Rroxscaffold_28G00446830 Rroxscaffold_28G00446860 Rroxscaffold_28G00446910 Rroxscaffold_29G00441560 Rroxscaffold_29G00441570 Rroxscaffold_29G00441590 Rroxscaffold_29G00441630 Rroxscaffold_29G00441640 Rroxscaffold_29G00441670 Rroxscaffold_29G00441680 Rroxscaffold_29G00441860 Rroxscaffold_30G00449540 Rroxscaffold_30G00449570 Rroxscaffold_30G00449580 Rroxscaffold_31G00438120 Rroxscaffold_31G00438140 Rroxscaffold_31G00438180 Rroxscaffold_31G00438190 Rroxscaffold_31G00438220 Rroxscaffold_31G00438230 Rroxscaffold_32G00442740 Rroxscaffold_32G00442760 Rroxscaffold_33G00439670 Rroxscaffold_33G00439720 Rroxscaffold_33G00439740 Rroxscaffold_33G00439760 Rroxscaffold_33G00439820 Rroxscaffold_34G00443140 Rroxscaffold_34G00443200 Rroxscaffold_34G00443250 Rroxscaffold_34G00443370 Rroxscaffold_34G00443390 Rroxscaffold_35G00441050 Rroxscaffold_35G00441080 Rroxscaffold_35G00441090 Rroxscaffold_35G00441170 Rroxscaffold_35G00441190 Rroxscaffold_35G00441230 Rroxscaffold_36G00440100 Rroxscaffold_36G00440170 Rroxscaffold_37G00445170 Rroxscaffold_38G00444440 Rroxscaffold_38G00444500 Rroxscaffold_38G00444550 Rroxscaffold_39G00448200 Rroxscaffold_39G00448210 Rroxscaffold_40G00447650 Rroxscaffold_40G00447680 Rroxscaffold_40G00447700 Rroxscaffold_40G00447710 Rroxscaffold_41G00451110 Rroxscaffold_41G00451130 Rroxscaffold_42G00450430 Rroxscaffold_43G00449800 Rroxscaffold_43G00449860 Rroxscaffold_43G00449920 Rroxscaffold_43G00449930 Rroxscaffold_44G00440540 Rroxscaffold_44G00440580 Rroxscaffold_44G00440660 Rroxscaffold_45G00438900 Rroxscaffold_45G00438930 Rroxscaffold_45G00438950 Rroxscaffold_47G00444020 Rroxscaffold_47G00444060 Rroxscaffold_47G00444120 Rroxscaffold_48G00448450 Rroxscaffold_49G00438570 Rroxscaffold_49G00438650 Rroxscaffold_49G00438700 Rroxscaffold_4G00321080 Rroxscaffold_50G00444130 Rroxscaffold_50G00444200 Rroxscaffold_50G00444210 Rroxscaffold_50G00444330 Rroxscaffold_50G00444350 Rroxscaffold_51G00447840 Rroxscaffold_52G00439310 Rroxscaffold_52G00439390 Rroxscaffold_54G00443660 Rroxscaffold_55G00450020 Rroxscaffold_55G00450050 Rroxscaffold_55G00450060 Rroxscaffold_55G00450080 Rroxscaffold_55G00450090 Rroxscaffold_55G00450120 Rroxscaffold_57G00443070 Rroxscaffold_59G00442210 Rroxscaffold_59G00442220 Rroxscaffold_60G00448360 Rroxscaffold_60G00448370 Rroxscaffold_60G00448410 Rroxscaffold_61G00449990 Rroxscaffold_62G00438040 Rroxscaffold_62G00438060 Rroxscaffold_62G00438080 Rroxscaffold_63G00444410 Rroxscaffold_63G00444430 Rroxscaffold_64G00450670 Rroxscaffold_65G00445300 Rroxscaffold_65G00445340 Rroxscaffold_65G00445360 Rroxscaffold_65G00445380 Rroxscaffold_65G00445420 Rroxscaffold_66G00437660 Rroxscaffold_66G00437820 Rroxscaffold_66G00437840 Rroxscaffold_66G00437890 Rroxscaffold_67G00448140 Rroxscaffold_67G00448150 Rroxscaffold_68G00447010 Rroxscaffold_69G00446670 Rroxscaffold_69G00446710 Rroxscaffold_69G00446770 Rroxscaffold_6G00387820 Rroxscaffold_70G00446300 Rroxscaffold_70G00446340 Rroxscaffold_70G00446380 Rroxscaffold_71G00445590 Rroxscaffold_71G00445600 Rroxscaffold_71G00445630 Rroxscaffold_71G00445690 Rroxscaffold_71G00445720 Rroxscaffold_71G00445740 Rroxscaffold_71G00445770 Rroxscaffold_72G00449370 Rroxscaffold_72G00449410 Rroxscaffold_72G00449450 Rroxscaffold_73G00439000 Rroxscaffold_73G00439060 Rroxscaffold_73G00439160 Rroxscaffold_73G00439270 Rroxscaffold_74G00442920 Rroxscaffold_75G00447260 Rroxscaffold_75G00447290 Rroxscaffold_75G00447430 Rroxscaffold_76G00448540 Rroxscaffold_76G00448610 Rroxscaffold_77G00449150 Rroxscaffold_78G00449610 Rroxscaffold_79G00450210 Rroxscaffold_80G00450330 Rroxscaffold_80G00450350 Rroxscaffold_81G00450480 Rroxscaffold_83G00450980 Rroxscaffold_85G00451230 Rroxscaffold_86G00451270 Rroxscaffold_89G00451410 Rroxscaffold_90G00448760 Rroxscaffold_90G00448770 Rroxscaffold_90G00448820 Rroxscaffold_91G00443000 Rroxscaffold_91G00443060 Rroxscaffold_92G00446430 Rroxscaffold_93G00440830 Rroxscaffold_93G00440850 Rroxscaffold_93G00440860 Rroxscaffold_93G00440880 Rroxscaffold_93G00440910 Rroxscaffold_94G00445830 Rroxscaffold_94G00445910 Rroxscaffold_94G00445940 Rroxscaffold_94G00446020 Rroxscaffold_97G00442340 Rroxscaffold_97G00442390 Rroxscaffold_97G00442400 Rroxscaffold_98G00451350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 207
Acc36I ACCTGC 1 cut(s) 207
AccI GTMKAC 1 cut(s) 505
AciI CCGC 5 cut(s) 224, 259, 273, 314, 456
AclI AACGTT 1 cut(s) 344
AclWI GGATC 2 cut(s) 91, 273
AcsI RAATTY 1 cut(s) 65
AfaI GTAC 1 cut(s) 118
AfiI CCNNNNNNNGG 2 cut(s) 300, 326
AjuI GAANNNNNNNTTGG 2 cut(s) 270, 302
AluBI AGCT 4 cut(s) 60, 141, 184, 435
AluI AGCT 4 cut(s) 60, 141, 184, 435
Alw21I GWGCWC 1 cut(s) 186
AlwI GGATC 2 cut(s) 91, 273
AoxI GGCC 1 cut(s) 91
ApeKI GCWGC 1 cut(s) 13
ApoI RAATTY 1 cut(s) 65
AspS9I GGNCC 1 cut(s) 291
AsuC2I CCSGG 1 cut(s) 263
AvaII GGWCC 1 cut(s) 291
BaeGI GKGCMC 1 cut(s) 313
BanII GRGCYC 1 cut(s) 186
BauI CACGAG 1 cut(s) 161
BbsI GAAGAC 2 cut(s) 247, 438
Bbv12I GWGCWC 1 cut(s) 186
BcnI CCSGG 1 cut(s) 263
BfaI CTAG 2 cut(s) 57, 425
BfuAI ACCTGC 1 cut(s) 207
BisI GCNGC 2 cut(s) 14, 224
BlsI GCNGC 2 cut(s) 15, 225
Bme1390I CCNGG 1 cut(s) 263
Bme18I GGWCC 1 cut(s) 291
BmgT120I GGNCC 1 cut(s) 291
BmiI GGNNCC 2 cut(s) 292, 381
BmrFI CCNGG 1 cut(s) 263
BoxI GACNNNNGTC 1 cut(s) 427
BpiI GAAGAC 2 cut(s) 247, 438
BplI GAGNNNNNCTC 2 cut(s) 419, 451
BpuEI CTTGAG 1 cut(s) 386
BpuMI CCSGG 1 cut(s) 263
Bsa29I ATCGAT 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 480
Bsc4I CCNNNNNNNGG 2 cut(s) 300, 326
Bse1I ACTGG 2 cut(s) 24, 124
BseCI ATCGAT 1 cut(s) 86
BseDI CCNNGG 1 cut(s) 480
BseLI CCNNNNNNNGG 2 cut(s) 300, 326
BseNI ACTGG 2 cut(s) 24, 124
BseSI GKGCMC 1 cut(s) 313
BseYI CCCAGC 1 cut(s) 228
BshFI GGCC 1 cut(s) 93
BshVI ATCGAT 1 cut(s) 86
BsiHKAI GWGCWC 1 cut(s) 186
BsiSI CCGG 1 cut(s) 263
BslFI GGGAC 1 cut(s) 525
BslI CCNNNNNNNGG 2 cut(s) 300, 326
BsmFI GGGAC 1 cut(s) 525
BsnI GGCC 1 cut(s) 93
Bsp1286I GDGCHC 2 cut(s) 186, 313
Bsp143I GATC 2 cut(s) 83, 265
BspACI CCGC 5 cut(s) 224, 259, 273, 314, 456
BspANI GGCC 1 cut(s) 93
BspDI ATCGAT 1 cut(s) 86
BspLI GGNNCC 2 cut(s) 292, 381
BspMI ACCTGC 1 cut(s) 207
BspPI GGATC 2 cut(s) 91, 273
BsrI ACTGG 2 cut(s) 24, 124
BssECI CCNNGG 1 cut(s) 480
BssMI GATC 2 cut(s) 83, 265
BssSI CACGAG 1 cut(s) 161
BssT1I CCWWGG 1 cut(s) 480
Bst2BI CACGAG 1 cut(s) 161
Bst4CI ACNGT 2 cut(s) 106, 516
BstC8I GCNNGC 2 cut(s) 273, 283
BstDEI CTNAG 1 cut(s) 190
BstKTI GATC 2 cut(s) 86, 268
BstMBI GATC 2 cut(s) 83, 265
BstMWI GCNNNNNNNGC 2 cut(s) 229, 464
BstPAI GACNNNNGTC 1 cut(s) 427
BstSCI CCNGG 1 cut(s) 261
BstSLI GKGCMC 1 cut(s) 313
BstV2I GAAGAC 2 cut(s) 247, 438
Bsu15I ATCGAT 1 cut(s) 86
BsuRI GGCC 1 cut(s) 93
BsuTUI ATCGAT 1 cut(s) 86
BtsI GCAGTG 1 cut(s) 313
BtsIMutI CAGTG 2 cut(s) 313, 521
BveI ACCTGC 1 cut(s) 207
Cac8I GCNNGC 2 cut(s) 273, 283
Cfr13I GGNCC 1 cut(s) 291
ClaI ATCGAT 1 cut(s) 86
Csp6I GTAC 1 cut(s) 117
CviQI GTAC 1 cut(s) 117
DdeI CTNAG 1 cut(s) 190
DpnI GATC 2 cut(s) 85, 267
DpnII GATC 2 cut(s) 83, 265
DraI TTTAAA 1 cut(s) 64
EciI GGCGGA 1 cut(s) 248
Ecl136II GAGCTC 1 cut(s) 184
Eco130I CCWWGG 1 cut(s) 480
Eco24I GRGCYC 1 cut(s) 186
Eco47I GGWCC 1 cut(s) 291
Eco53kI GAGCTC 1 cut(s) 184
EcoICRI GAGCTC 1 cut(s) 184
EcoT14I CCWWGG 1 cut(s) 480
EcoT38I GRGCYC 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 480
FaiI YATR 1 cut(s) 390
FaqI GGGAC 1 cut(s) 525
FauI CCCGC 3 cut(s) 280, 321, 463
FblI GTMKAC 1 cut(s) 505
Fnu4HI GCNGC 2 cut(s) 14, 224
FriOI GRGCYC 1 cut(s) 186
Fsp4HI GCNGC 2 cut(s) 14, 224
FspBI CTAG 2 cut(s) 57, 425
GluI GCNGC 2 cut(s) 14, 224
GsaI CCCAGC 1 cut(s) 232
HaeIII GGCC 1 cut(s) 93
HapII CCGG 1 cut(s) 263
HinfI GANTC 5 cut(s) 130, 322, 428, 461, 521
HpaII CCGG 1 cut(s) 263
Hpy166II GTNNAC 1 cut(s) 506
Hpy188I TCNGA 4 cut(s) 49, 129, 321, 422
Hpy8I GTNNAC 1 cut(s) 506
HpyAV CCTTC 1 cut(s) 370
HpyCH4III ACNGT 2 cut(s) 106, 516
HpyCH4IV ACGT 1 cut(s) 344
HpyF10VI GCNNNNNNNGC 2 cut(s) 229, 464
HpyF3I CTNAG 1 cut(s) 190
HpySE526I ACGT 1 cut(s) 344
Kzo9I GATC 2 cut(s) 83, 265
LmnI GCTCC 1 cut(s) 385
MaeI CTAG 2 cut(s) 57, 425
MaeII ACGT 1 cut(s) 344
MaeIII GTNAC 1 cut(s) 38
MalI GATC 2 cut(s) 85, 267
MboI GATC 2 cut(s) 83, 265
MboII GAAGA 2 cut(s) 247, 438
MhlI GDGCHC 2 cut(s) 186, 313
MluCI AATT 1 cut(s) 65
MlyI GAGTC 1 cut(s) 437
MmeI TCCRAC 1 cut(s) 400
MnlI CCTC 4 cut(s) 64, 294, 327, 408
MseI TTAA 4 cut(s) 63, 212, 347, 529
MspA1I CMGCKG 1 cut(s) 458
MspI CCGG 1 cut(s) 263
MspR9I CCNGG 1 cut(s) 263
MwoI GCNNNNNNNGC 2 cut(s) 229, 464
NciI CCSGG 1 cut(s) 263
NdeII GATC 2 cut(s) 83, 265
NlaIV GGNNCC 2 cut(s) 292, 381
PaqCI CACCTGC 1 cut(s) 207
PfeI GAWTC 4 cut(s) 130, 322, 461, 521
PflFI GACNNNGTC 1 cut(s) 251
PkrI GCNGC 2 cut(s) 15, 225
PleI GAGTC 1 cut(s) 436
PpsI GAGTC 1 cut(s) 436
PshAI GACNNNNGTC 1 cut(s) 427
Psp124BI GAGCTC 1 cut(s) 186
Psp1406I AACGTT 1 cut(s) 344
PspFI CCCAGC 1 cut(s) 228
PspN4I GGNNCC 2 cut(s) 292, 381
PspPI GGNCC 1 cut(s) 291
PsyI GACNNNGTC 1 cut(s) 251
RsaI GTAC 1 cut(s) 118
RsaNI GTAC 1 cut(s) 117
SacI GAGCTC 1 cut(s) 186
SaqAI TTAA 4 cut(s) 63, 212, 347, 529
SatI GCNGC 2 cut(s) 14, 224
Sau3AI GATC 2 cut(s) 83, 265
Sau96I GGNCC 1 cut(s) 291
SchI GAGTC 1 cut(s) 437
ScrFI CCNGG 1 cut(s) 263
SduI GDGCHC 2 cut(s) 186, 313
SinI GGWCC 1 cut(s) 291
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
Sse9I AATT 1 cut(s) 65
SsiI CCGC 5 cut(s) 224, 259, 273, 314, 456
SspMI CTAG 2 cut(s) 57, 425
SstI GAGCTC 1 cut(s) 186
StyD4I CCNGG 1 cut(s) 261
StyI CCWWGG 1 cut(s) 480
TaaI ACNGT 2 cut(s) 106, 516
TaiI ACGT 1 cut(s) 347
TaqI TCGA 1 cut(s) 86
TasI AATT 1 cut(s) 65
TauI GCSGC 1 cut(s) 226
TfiI GAWTC 4 cut(s) 130, 322, 461, 521
Tru1I TTAA 4 cut(s) 63, 212, 347, 529
Tru9I TTAA 4 cut(s) 63, 212, 347, 529
TscAI CASTG 2 cut(s) 313, 521
TseI GCWGC 1 cut(s) 13
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 342
TspRI CASTG 2 cut(s) 313, 521
Tth111I GACNNNGTC 1 cut(s) 251
VpaK11BI GGWCC 1 cut(s) 291
XapI RAATTY 1 cut(s) 65
XmiI GTMKAC 1 cut(s) 505
XspI CTAG 2 cut(s) 57, 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.